RNA–Protein interactions for RNA: ENST00000509876.5

PHF3-210, Transcript of PHD finger protein 3, humanhuman

TSL 1 (best)

Gene PHF3, Length 7,124 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-210ENST00000509876 LRP1BQ9NZR2 4599 aa2.46□□□□□ -2.02
PHF3-210ENST00000509876 P0C880 135 aa2.45□□□□□ -2.02
PHF3-210ENST00000509876 RYR2Q92736 4967 aa2.43□□□□□ -2.02
PHF3-210ENST00000509876 KRTAP3-1Q9BYR8 98 aa2.42□□□□□ -2.02
PHF3-210ENST00000509876 SACSQ9NZJ4 4579 aa2.41□□□□□ -2.02
PHF3-210ENST00000509876 BIRC6Q9NR09 4857 aa2.41□□□□□ -2.02
PHF3-210ENST00000509876 PP632Q6XCG6 107 aa2.4□□□□□ -2.02
PHF3-210ENST00000509876 A6NN06 94 aa2.4□□□□□ -2.03
PHF3-210ENST00000509876 KRTAP25-1Q3LHN0 102 aa2.4□□□□□ -2.03
PHF3-210ENST00000509876 KMT2AQ03164 3969 aa2.39□□□□□ -2.03
PHF3-210ENST00000509876 PRAC1Q96KF2 57 aa2.38□□□□□ -2.03
PHF3-210ENST00000509876 RYR3Q15413 4870 aa2.36□□□□□ -2.03
PHF3-210ENST00000509876 RYR1P21817 5038 aa2.36□□□□□ -2.03
PHF3-210ENST00000509876 APOBP04114 4563 aaKnown RBP2.35□□□□□ -2.03
PHF3-210ENST00000509876 KRTAP17-1Q9BYP8 105 aa2.34□□□□□ -2.04
PHF3-210ENST00000509876 MT1HP80294 61 aa2.34□□□□□ -2.04
PHF3-210ENST00000509876 LCE2DQ5TA82 110 aaPredicted RBP2.32□□□□□ -2.04
PHF3-210ENST00000509876 KRTAP4-1Q9BYQ7 146 aa2.32□□□□□ -2.04
PHF3-210ENST00000509876 HECTD4Q9Y4D8 3996 aa2.32□□□□□ -2.04
PHF3-210ENST00000509876 LYSTQ99698 3801 aa2.32□□□□□ -2.04
PHF3-210ENST00000509876 FAT1Q14517 4588 aa2.32□□□□□ -2.04
PHF3-210ENST00000509876 KRTAP12-2P59991 146 aa2.31□□□□□ -2.04
PHF3-210ENST00000509876 KRTAP10-6P60371 365 aaPredicted RBP2.31□□□□□ -2.04
PHF3-210ENST00000509876 SRRM2Q9UQ35 2752 aaKnown RBP2.3□□□□□ -2.04
PHF3-210ENST00000509876 HSPG2P98160 4391 aa2.3□□□□□ -2.04
PHF3-210ENST00000509876 KRTAP3-3Q9BYR6 98 aa2.3□□□□□ -2.04
PHF3-210ENST00000509876 HYDINQ4G0P3 5121 aa2.3□□□□□ -2.04
PHF3-210ENST00000509876 KRTAP13-4Q3LI77 160 aa2.3□□□□□ -2.04
PHF3-210ENST00000509876 VPS13BQ7Z7G8 4022 aa2.29□□□□□ -2.04
PHF3-210ENST00000509876 CSMD3Q7Z407 3707 aa2.29□□□□□ -2.04
PHF3-210ENST00000509876 KRTAP12-1P59990 96 aa2.29□□□□□ -2.04
PHF3-210ENST00000509876 FRAS1Q86XX4 4008 aa2.29□□□□□ -2.04
PHF3-210ENST00000509876 PKHD1L1Q86WI1 4243 aa2.28□□□□□ -2.04
PHF3-210ENST00000509876 C10orf95Q9H7T3 257 aa2.27□□□□□ -2.05
PHF3-210ENST00000509876 PKD1P98161 4303 aa2.27□□□□□ -2.05
PHF3-210ENST00000509876 HERC1Q15751 4861 aa2.26□□□□□ -2.05
PHF3-210ENST00000509876 KIAA1109Q2LD37 5005 aa2.25□□□□□ -2.05
PHF3-210ENST00000509876 FAT3Q8TDW7 4589 aa2.25□□□□□ -2.05
PHF3-210ENST00000509876 KRTAP3-2Q9BYR7 98 aa2.24□□□□□ -2.05
PHF3-210ENST00000509876 MT2AP02795 61 aa2.24□□□□□ -2.05
PHF3-210ENST00000509876 PCLOQ9Y6V0 5065 aa2.23□□□□□ -2.05
PHF3-210ENST00000509876 KRTAP10-12P60413 245 aa2.22□□□□□ -2.05
PHF3-210ENST00000509876 HERC2O95714 4834 aa2.22□□□□□ -2.05
PHF3-210ENST00000509876 A0A0A0MQY5 61 aa2.21□□□□□ -2.06
PHF3-210ENST00000509876 PKHD1P08F94 4074 aa2.2□□□□□ -2.06
PHF3-210ENST00000509876 MYCBP2O75592 4640 aa2.2□□□□□ -2.06
PHF3-210ENST00000509876 MT1FP04733 61 aa2.19□□□□□ -2.06
PHF3-210ENST00000509876 KMT2CQ8NEZ4 4911 aaKnown RBP2.18□□□□□ -2.06
PHF3-210ENST00000509876 LORP23490 312 aaPredicted RBP2.18□□□□□ -2.06
PHF3-210ENST00000509876 KRTAP8-1Q8IUC2 63 aa2.17□□□□□ -2.06
PHF3-210ENST00000509876 MUC17Q685J3 4493 aa2.17□□□□□ -2.06
PHF3-210ENST00000509876 KRTAP15-1Q3LI76 137 aa2.17□□□□□ -2.06
PHF3-210ENST00000509876 SPRR2GQ9BYE4 73 aa2.17□□□□□ -2.06
PHF3-210ENST00000509876 EPPK1P58107 5090 aaKnown RBP2.17□□□□□ -2.06
PHF3-210ENST00000509876 H3BS24 57 aa2.17□□□□□ -2.06
PHF3-210ENST00000509876 TNXBP22105 4242 aa2.16□□□□□ -2.06
PHF3-210ENST00000509876 LRP1Q07954 4544 aaKnown RBP2.14□□□□□ -2.07
PHF3-210ENST00000509876 KRTAP23-1A1A580 65 aa2.11□□□□□ -2.07
PHF3-210ENST00000509876 ABCA13Q86UQ4 5058 aa2.1□□□□□ -2.07
PHF3-210ENST00000509876 LCE2CQ5TA81 110 aa2.1□□□□□ -2.07
PHF3-210ENST00000509876 KRTAP12-3P60328 96 aa2.1□□□□□ -2.07
PHF3-210ENST00000509876 LCE3AQ5TA76 89 aa2.09□□□□□ -2.08
PHF3-210ENST00000509876 KRTAP9-8Q9BYQ0 159 aa2.07□□□□□ -2.08
PHF3-210ENST00000509876 KRTAP19-8Q3LI54 63 aa2.07□□□□□ -2.08
PHF3-210ENST00000509876 SPRR2FQ96RM1 72 aa2.06□□□□□ -2.08
PHF3-210ENST00000509876 CRCT1Q9UGL9 99 aa2.05□□□□□ -2.08
PHF3-210ENST00000509876 NDUFAF8A1L188 74 aa2.05□□□□□ -2.08
PHF3-210ENST00000509876 KRTAP9-2Q9BYQ4 174 aa2.04□□□□□ -2.08
PHF3-210ENST00000509876 KRTAP10-5P60370 271 aa2.03□□□□□ -2.08
PHF3-210ENST00000509876 KRTAP9-3Q9BYQ3 159 aa2.03□□□□□ -2.08
PHF3-210ENST00000509876 LPAP08519 4548 aa2.03□□□□□ -2.08
PHF3-210ENST00000509876 KRTAP19-1Q8IUB9 90 aa2.02□□□□□ -2.09
PHF3-210ENST00000509876 KRTAP19-2Q3LHN2 52 aa2.02□□□□□ -2.09
PHF3-210ENST00000509876 SPRR2EP22531 72 aa2□□□□□ -2.09
PHF3-210ENST00000509876 SPRR2BP35325 72 aa2□□□□□ -2.09
PHF3-210ENST00000509876 SPRR2AP35326 72 aa2□□□□□ -2.09
PHF3-210ENST00000509876 LCE2AQ5TA79 106 aaPredicted RBP1.99□□□□□ -2.09
PHF3-210ENST00000509876 MT1BP07438 61 aa1.98□□□□□ -2.09
PHF3-210ENST00000509876 KRTAP9-6A0A140TA67 174 aa1.98□□□□□ -2.09
PHF3-210ENST00000509876 LRP2P98164 4655 aa1.98□□□□□ -2.09
PHF3-210ENST00000509876 KRTAP10-7P60409 375 aaPredicted RBP1.96□□□□□ -2.1
PHF3-210ENST00000509876 FLGP20930 4061 aaPredicted RBP1.96□□□□□ -2.1
PHF3-210ENST00000509876 KRTAP19-5Q3LI72 72 aa1.96□□□□□ -2.1
PHF3-210ENST00000509876 HMCN2Q8NDA2 5059 aa1.96□□□□□ -2.1
PHF3-210ENST00000509876 UBR4Q5T4S7 5183 aa1.96□□□□□ -2.1
PHF3-210ENST00000509876 MT1XP80297 61 aa1.95□□□□□ -2.1
PHF3-210ENST00000509876 RNF213Q63HN8 5207 aa1.95□□□□□ -2.1
PHF3-210ENST00000509876 KRTAP19-4Q3LI73 84 aa1.95□□□□□ -2.1
PHF3-210ENST00000509876 SPRR2DP22532 72 aa1.95□□□□□ -2.1
PHF3-210ENST00000509876 LCE2BO14633 110 aa1.94□□□□□ -2.1
PHF3-210ENST00000509876 KRTAP19-6Q3LI70 58 aa1.93□□□□□ -2.1
PHF3-210ENST00000509876 FAT4Q6V0I7 4981 aa1.9□□□□□ -2.11
PHF3-210ENST00000509876 LCE3CQ5T5A8 94 aa1.87□□□□□ -2.11
PHF3-210ENST00000509876 MT1GP13640 62 aa1.84□□□□□ -2.11
PHF3-210ENST00000509876 KRTAP4-8A0A0G2JLE6 195 aa1.83□□□□□ -2.12
PHF3-210ENST00000509876 KRTAP4-8Q9BYQ9 185 aa1.83□□□□□ -2.12
PHF3-210ENST00000509876 KRTAP9-7A8MTY7 169 aa1.81□□□□□ -2.12
PHF3-210ENST00000509876 KRTAP19-3Q7Z4W3 81 aa1.8□□□□□ -2.12
PHF3-210ENST00000509876 LOC100996750A0A140TA64 210 aa1.8□□□□□ -2.12
PHF3-210ENST00000509876 KRTAP4-6Q9BYQ5 205 aa1.8□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 124.5 ms