RNA–Protein interactions for RNA: ENST00000504387.5

NEDD9-208, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene NEDD9, Length 3,211 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-208ENST00000504387 KRTAP13-4Q3LI77 160 aa4.03□□□□□ -1.76
NEDD9-208ENST00000504387 SACSQ9NZJ4 4579 aa4.02□□□□□ -1.77
NEDD9-208ENST00000504387 PKHD1P08F94 4074 aa4.02□□□□□ -1.77
NEDD9-208ENST00000504387 MYCBP2O75592 4640 aa4.01□□□□□ -1.77
NEDD9-208ENST00000504387 RPL37P61927 97 aaKnown RBP4□□□□□ -1.77
NEDD9-208ENST00000504387 RYR3Q15413 4870 aa3.98□□□□□ -1.77
NEDD9-208ENST00000504387 BIRC6Q9NR09 4857 aa3.98□□□□□ -1.77
NEDD9-208ENST00000504387 KRTAP17-1Q9BYP8 105 aa3.97□□□□□ -1.77
NEDD9-208ENST00000504387 KMT2CQ8NEZ4 4911 aaKnown RBP3.96□□□□□ -1.78
NEDD9-208ENST00000504387 LCE2BO14633 110 aa3.95□□□□□ -1.78
NEDD9-208ENST00000504387 C20orf166-AS1Q96NR2 134 aa3.95□□□□□ -1.78
NEDD9-208ENST00000504387 KRTAP10-6P60371 365 aaPredicted RBP3.94□□□□□ -1.78
NEDD9-208ENST00000504387 RYR2Q92736 4967 aa3.93□□□□□ -1.78
NEDD9-208ENST00000504387 KRTAP10-8P60410 259 aa3.92□□□□□ -1.78
NEDD9-208ENST00000504387 KRTAP12-2P59991 146 aa3.92□□□□□ -1.78
NEDD9-208ENST00000504387 DYNC1H1Q14204 4646 aaKnown RBP3.91□□□□□ -1.78
NEDD9-208ENST00000504387 S4R3F8 94 aa3.9□□□□□ -1.79
NEDD9-208ENST00000504387 LRP1Q07954 4544 aaKnown RBP3.9□□□□□ -1.79
NEDD9-208ENST00000504387 Q5VSD8 79 aa3.88□□□□□ -1.79
NEDD9-208ENST00000504387 HSPG2P98160 4391 aa3.87□□□□□ -1.79
NEDD9-208ENST00000504387 FAT3Q8TDW7 4589 aa3.85□□□□□ -1.79
NEDD9-208ENST00000504387 RPS29P62273 56 aaKnown RBP3.85□□□□□ -1.79
NEDD9-208ENST00000504387 KRTAP15-1Q3LI76 137 aa3.85□□□□□ -1.79
NEDD9-208ENST00000504387 APOBP04114 4563 aaKnown RBP3.84□□□□□ -1.79
NEDD9-208ENST00000504387 LPAP08519 4548 aa3.83□□□□□ -1.8
NEDD9-208ENST00000504387 EPPK1P58107 5090 aaKnown RBP3.83□□□□□ -1.8
NEDD9-208ENST00000504387 SEC61BP60468 96 aaKnown RBP3.83□□□□□ -1.8
NEDD9-208ENST00000504387 A0A1B0GVY2 172 aa3.81□□□□□ -1.8
NEDD9-208ENST00000504387 KRTAP12-1P59990 96 aa3.8□□□□□ -1.8
NEDD9-208ENST00000504387 XP32Q5T750 250 aa3.79□□□□□ -1.8
NEDD9-208ENST00000504387 KRTAP10-4P60372 401 aaPredicted RBP3.79□□□□□ -1.8
NEDD9-208ENST00000504387 HERC2O95714 4834 aa3.78□□□□□ -1.8
NEDD9-208ENST00000504387 LCE2CQ5TA81 110 aa3.75□□□□□ -1.81
NEDD9-208ENST00000504387 PKHD1L1Q86WI1 4243 aa3.75□□□□□ -1.81
NEDD9-208ENST00000504387 M0QZ58 72 aa3.74□□□□□ -1.81
NEDD9-208ENST00000504387 LCE2AQ5TA79 106 aaPredicted RBP3.74□□□□□ -1.81
NEDD9-208ENST00000504387 PCLOQ9Y6V0 5065 aa3.74□□□□□ -1.81
NEDD9-208ENST00000504387 LRP2P98164 4655 aa3.74□□□□□ -1.81
NEDD9-208ENST00000504387 KIAA1109Q2LD37 5005 aa3.73□□□□□ -1.81
NEDD9-208ENST00000504387 RYR1P21817 5038 aa3.7□□□□□ -1.82
NEDD9-208ENST00000504387 R4GN34 69 aa3.7□□□□□ -1.82
NEDD9-208ENST00000504387 PLAC4Q8WY50 150 aa3.67□□□□□ -1.82
NEDD9-208ENST00000504387 TNXBP22105 4242 aa3.67□□□□□ -1.82
NEDD9-208ENST00000504387 LUZP6Q538Z0 58 aa3.66□□□□□ -1.82
NEDD9-208ENST00000504387 LORP23490 312 aaPredicted RBP3.66□□□□□ -1.82
NEDD9-208ENST00000504387 KRTAP23-1A1A580 65 aa3.63□□□□□ -1.83
NEDD9-208ENST00000504387 MT1HL1P0DM35 61 aa3.61□□□□□ -1.83
NEDD9-208ENST00000504387 KRTAP4-5Q9BYR2 181 aa3.59□□□□□ -1.83
NEDD9-208ENST00000504387 CAMK2N1Q7Z7J9 78 aa3.59□□□□□ -1.83
NEDD9-208ENST00000504387 ABCA13Q86UQ4 5058 aa3.55□□□□□ -1.84
NEDD9-208ENST00000504387 MUC2Q02817 5179 aa3.54□□□□□ -1.84
NEDD9-208ENST00000504387 KRTAP4-1Q9BYQ7 146 aa3.45□□□□□ -1.86
NEDD9-208ENST00000504387 LOC100996750A0A140TA64 210 aa3.43□□□□□ -1.86
NEDD9-208ENST00000504387 KRTAP4-6Q9BYQ5 205 aa3.43□□□□□ -1.86
NEDD9-208ENST00000504387 M0R2T5 61 aa3.42□□□□□ -1.86
NEDD9-208ENST00000504387 HERC1Q15751 4861 aa3.38□□□□□ -1.87
NEDD9-208ENST00000504387 UBR4Q5T4S7 5183 aa3.37□□□□□ -1.87
NEDD9-208ENST00000504387 TNP1P09430 55 aa3.35□□□□□ -1.87
NEDD9-208ENST00000504387 PP632Q6XCG6 107 aa3.35□□□□□ -1.87
NEDD9-208ENST00000504387 FAT4Q6V0I7 4981 aa3.33□□□□□ -1.88
NEDD9-208ENST00000504387 MUC17Q685J3 4493 aa3.31□□□□□ -1.88
NEDD9-208ENST00000504387 RNF213Q63HN8 5207 aa3.28□□□□□ -1.88
NEDD9-208ENST00000504387 HMCN2Q8NDA2 5059 aa3.26□□□□□ -1.89
NEDD9-208ENST00000504387 KRTAP10-10P60014 251 aa3.22□□□□□ -1.89
NEDD9-208ENST00000504387 KRTAP9-6A0A140TA67 174 aa3.21□□□□□ -1.9
NEDD9-208ENST00000504387 LCE3AQ5TA76 89 aa3.2□□□□□ -1.9
NEDD9-208ENST00000504387 KRTAP19-2Q3LHN2 52 aa3.19□□□□□ -1.9
NEDD9-208ENST00000504387 KRTAP9-2Q9BYQ4 174 aa3.16□□□□□ -1.9
NEDD9-208ENST00000504387 SPRR5A0A1B0GTR4 108 aa3.15□□□□□ -1.91
NEDD9-208ENST00000504387 FLGP20930 4061 aaPredicted RBP3.13□□□□□ -1.91
NEDD9-208ENST00000504387 KRTAP4-8Q9BYQ9 185 aa3.1□□□□□ -1.91
NEDD9-208ENST00000504387 PRO2289Q9P1D8 64 aa3.08□□□□□ -1.92
NEDD9-208ENST00000504387 KRTAP19-1Q8IUB9 90 aa3.07□□□□□ -1.92
NEDD9-208ENST00000504387 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.05□□□□□ -1.92
NEDD9-208ENST00000504387 MT1FP04733 61 aa3.04□□□□□ -1.92
NEDD9-208ENST00000504387 MT1HP80294 61 aa3.04□□□□□ -1.92
NEDD9-208ENST00000504387 KMT2DO14686 5537 aa3.03□□□□□ -1.92
NEDD9-208ENST00000504387 MT2AP02795 61 aa3.02□□□□□ -1.93
NEDD9-208ENST00000504387 SPRR2GQ9BYE4 73 aa3□□□□□ -1.93
NEDD9-208ENST00000504387 KRTAP12-3P60328 96 aa3□□□□□ -1.93
NEDD9-208ENST00000504387 USH2AO75445 5202 aa2.98□□□□□ -1.93
NEDD9-208ENST00000504387 INE1O15225 51 aa2.95□□□□□ -1.94
NEDD9-208ENST00000504387 KRTAP10-12P60413 245 aa2.95□□□□□ -1.94
NEDD9-208ENST00000504387 KRTAP10-7P60409 375 aaPredicted RBP2.95□□□□□ -1.94
NEDD9-208ENST00000504387 FSIP2Q5CZC0 6907 aa2.94□□□□□ -1.94
NEDD9-208ENST00000504387 KRTAP8-1Q8IUC2 63 aa2.94□□□□□ -1.94
NEDD9-208ENST00000504387 CRCT1Q9UGL9 99 aa2.93□□□□□ -1.94
NEDD9-208ENST00000504387 KRTAP9-8Q9BYQ0 159 aa2.93□□□□□ -1.94
NEDD9-208ENST00000504387 KRTAP10-5P60370 271 aa2.92□□□□□ -1.94
NEDD9-208ENST00000504387 MT1XP80297 61 aa2.91□□□□□ -1.94
NEDD9-208ENST00000504387 LCE3BQ5TA77 95 aa2.91□□□□□ -1.94
NEDD9-208ENST00000504387 KRTAP4-12Q9BQ66 201 aa2.91□□□□□ -1.94
NEDD9-208ENST00000504387 KRTAP9-9Q9BYP9 154 aa2.89□□□□□ -1.95
NEDD9-208ENST00000504387 KRTAP9-4Q9BYQ2 154 aa2.89□□□□□ -1.95
NEDD9-208ENST00000504387 MT1BP07438 61 aa2.88□□□□□ -1.95
NEDD9-208ENST00000504387 KRTAP19-4Q3LI73 84 aa2.87□□□□□ -1.95
NEDD9-208ENST00000504387 KRTAP4-8A0A0G2JLE6 195 aa2.87□□□□□ -1.95
NEDD9-208ENST00000504387 KRTAP19-5Q3LI72 72 aa2.84□□□□□ -1.95
NEDD9-208ENST00000504387 KRTAP4-7Q9BYR0 210 aa2.84□□□□□ -1.96
NEDD9-208ENST00000504387 KRTAP9-7A8MTY7 169 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 263.1 ms