RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 DYNC1H1Q14204 4646 aaKnown RBP5.77□□□□□ -1.49
MSH5-SAPCD1-207ENST00000493662 P0C880 135 aa5.74□□□□□ -1.49
MSH5-SAPCD1-207ENST00000493662 FAT3Q8TDW7 4589 aa5.72□□□□□ -1.49
MSH5-SAPCD1-207ENST00000493662 VPS13BQ7Z7G8 4022 aa5.71□□□□□ -1.5
MSH5-SAPCD1-207ENST00000493662 S4R3F8 94 aa5.71□□□□□ -1.5
MSH5-SAPCD1-207ENST00000493662 LRP1Q07954 4544 aaKnown RBP5.69□□□□□ -1.5
MSH5-SAPCD1-207ENST00000493662 RYR1P21817 5038 aa5.68□□□□□ -1.5
MSH5-SAPCD1-207ENST00000493662 PKD1P98161 4303 aa5.67□□□□□ -1.5
MSH5-SAPCD1-207ENST00000493662 SACSQ9NZJ4 4579 aa5.66□□□□□ -1.5
MSH5-SAPCD1-207ENST00000493662 RYR3Q15413 4870 aa5.66□□□□□ -1.5
MSH5-SAPCD1-207ENST00000493662 KRTAP4-5Q9BYR2 181 aa5.65□□□□□ -1.5
MSH5-SAPCD1-207ENST00000493662 XP32Q5T750 250 aa5.65□□□□□ -1.51
MSH5-SAPCD1-207ENST00000493662 RPS29P62273 56 aaKnown RBP5.64□□□□□ -1.51
MSH5-SAPCD1-207ENST00000493662 FAT2Q9NYQ8 4349 aa5.63□□□□□ -1.51
MSH5-SAPCD1-207ENST00000493662 APOBP04114 4563 aaKnown RBP5.62□□□□□ -1.51
MSH5-SAPCD1-207ENST00000493662 KRTAP10-8P60410 259 aa5.59□□□□□ -1.51
MSH5-SAPCD1-207ENST00000493662 TPRXLQ17RH7 258 aa5.58□□□□□ -1.52
MSH5-SAPCD1-207ENST00000493662 KRTAP10-4P60372 401 aaPredicted RBP5.58□□□□□ -1.52
MSH5-SAPCD1-207ENST00000493662 CAMK2N1Q7Z7J9 78 aa5.57□□□□□ -1.52
MSH5-SAPCD1-207ENST00000493662 M0R2T5 61 aa5.57□□□□□ -1.52
MSH5-SAPCD1-207ENST00000493662 R4GN34 69 aa5.57□□□□□ -1.52
MSH5-SAPCD1-207ENST00000493662 M0QZ58 72 aa5.54□□□□□ -1.52
MSH5-SAPCD1-207ENST00000493662 SEC61BP60468 96 aaKnown RBP5.53□□□□□ -1.52
MSH5-SAPCD1-207ENST00000493662 RYR2Q92736 4967 aa5.52□□□□□ -1.53
MSH5-SAPCD1-207ENST00000493662 PLAC4Q8WY50 150 aa5.51□□□□□ -1.53
MSH5-SAPCD1-207ENST00000493662 KRTAP17-1Q9BYP8 105 aa5.48□□□□□ -1.53
MSH5-SAPCD1-207ENST00000493662 MT1HL1P0DM35 61 aa5.47□□□□□ -1.53
MSH5-SAPCD1-207ENST00000493662 KRTAP3-1Q9BYR8 98 aa5.46□□□□□ -1.53
MSH5-SAPCD1-207ENST00000493662 KRTAP15-1Q3LI76 137 aa5.43□□□□□ -1.54
MSH5-SAPCD1-207ENST00000493662 EPPK1P58107 5090 aaKnown RBP5.42□□□□□ -1.54
MSH5-SAPCD1-207ENST00000493662 LRP2P98164 4655 aa5.39□□□□□ -1.55
MSH5-SAPCD1-207ENST00000493662 KRTAP12-2P59991 146 aa5.37□□□□□ -1.55
MSH5-SAPCD1-207ENST00000493662 KRTAP13-4Q3LI77 160 aa5.35□□□□□ -1.55
MSH5-SAPCD1-207ENST00000493662 PKHD1L1Q86WI1 4243 aa5.35□□□□□ -1.55
MSH5-SAPCD1-207ENST00000493662 HERC2O95714 4834 aa5.32□□□□□ -1.56
MSH5-SAPCD1-207ENST00000493662 HSPG2P98160 4391 aa5.3□□□□□ -1.56
MSH5-SAPCD1-207ENST00000493662 KRTAP10-6P60371 365 aaPredicted RBP5.3□□□□□ -1.56
MSH5-SAPCD1-207ENST00000493662 KRTAP12-1P59990 96 aa5.28□□□□□ -1.56
MSH5-SAPCD1-207ENST00000493662 LPAP08519 4548 aa5.27□□□□□ -1.57
MSH5-SAPCD1-207ENST00000493662 PP632Q6XCG6 107 aa5.23□□□□□ -1.57
MSH5-SAPCD1-207ENST00000493662 ABCA13Q86UQ4 5058 aa5.19□□□□□ -1.58
MSH5-SAPCD1-207ENST00000493662 MUC2Q02817 5179 aa5.18□□□□□ -1.58
MSH5-SAPCD1-207ENST00000493662 KRTAP3-3Q9BYR6 98 aa5.16□□□□□ -1.58
MSH5-SAPCD1-207ENST00000493662 TNXBP22105 4242 aa5.15□□□□□ -1.58
MSH5-SAPCD1-207ENST00000493662 KRTAP3-2Q9BYR7 98 aa5.14□□□□□ -1.59
MSH5-SAPCD1-207ENST00000493662 TNP1P09430 55 aa5.13□□□□□ -1.59
MSH5-SAPCD1-207ENST00000493662 HERC1Q15751 4861 aa5.11□□□□□ -1.59
MSH5-SAPCD1-207ENST00000493662 KRTAP4-1Q9BYQ7 146 aa5.1□□□□□ -1.59
MSH5-SAPCD1-207ENST00000493662 RNF213Q63HN8 5207 aa5.09□□□□□ -1.59
MSH5-SAPCD1-207ENST00000493662 PCLOQ9Y6V0 5065 aa5.07□□□□□ -1.6
MSH5-SAPCD1-207ENST00000493662 KRTAP10-10P60014 251 aa5.05□□□□□ -1.6
MSH5-SAPCD1-207ENST00000493662 LORP23490 312 aaPredicted RBP5.02□□□□□ -1.61
MSH5-SAPCD1-207ENST00000493662 BIRC6Q9NR09 4857 aa4.98□□□□□ -1.61
MSH5-SAPCD1-207ENST00000493662 FAT4Q6V0I7 4981 aa4.97□□□□□ -1.61
MSH5-SAPCD1-207ENST00000493662 UBR4Q5T4S7 5183 aa4.94□□□□□ -1.62
MSH5-SAPCD1-207ENST00000493662 PRO2289Q9P1D8 64 aa4.85□□□□□ -1.63
MSH5-SAPCD1-207ENST00000493662 FSIP2Q5CZC0 6907 aa4.84□□□□□ -1.64
MSH5-SAPCD1-207ENST00000493662 INE1O15225 51 aa4.74□□□□□ -1.65
MSH5-SAPCD1-207ENST00000493662 MUC17Q685J3 4493 aa4.68□□□□□ -1.66
MSH5-SAPCD1-207ENST00000493662 HMCN2Q8NDA2 5059 aa4.66□□□□□ -1.66
MSH5-SAPCD1-207ENST00000493662 MT1HP80294 61 aa4.64□□□□□ -1.67
MSH5-SAPCD1-207ENST00000493662 MT1FP04733 61 aa4.57□□□□□ -1.68
MSH5-SAPCD1-207ENST00000493662 MT2AP02795 61 aa4.55□□□□□ -1.68
MSH5-SAPCD1-207ENST00000493662 LCE2CQ5TA81 110 aa4.51□□□□□ -1.69
MSH5-SAPCD1-207ENST00000493662 KRTAP23-1A1A580 65 aa4.51□□□□□ -1.69
MSH5-SAPCD1-207ENST00000493662 USH2AO75445 5202 aa4.49□□□□□ -1.69
MSH5-SAPCD1-207ENST00000493662 KRTAP19-2Q3LHN2 52 aa4.48□□□□□ -1.69
MSH5-SAPCD1-207ENST00000493662 FLGP20930 4061 aaPredicted RBP4.46□□□□□ -1.7
MSH5-SAPCD1-207ENST00000493662 KRTAP19-1Q8IUB9 90 aa4.42□□□□□ -1.7
MSH5-SAPCD1-207ENST00000493662 LCE3AQ5TA76 89 aa4.41□□□□□ -1.7
MSH5-SAPCD1-207ENST00000493662 SPRR2GQ9BYE4 73 aa4.36□□□□□ -1.71
MSH5-SAPCD1-207ENST00000493662 KRTAP9-8Q9BYQ0 159 aa4.36□□□□□ -1.71
MSH5-SAPCD1-207ENST00000493662 KRTAP10-12P60413 245 aa4.35□□□□□ -1.71
MSH5-SAPCD1-207ENST00000493662 KRTAP12-3P60328 96 aa4.31□□□□□ -1.72
MSH5-SAPCD1-207ENST00000493662 SPRR5A0A1B0GTR4 108 aa4.3□□□□□ -1.72
MSH5-SAPCD1-207ENST00000493662 KMT2DO14686 5537 aa4.25□□□□□ -1.73
MSH5-SAPCD1-207ENST00000493662 KRTAP10-7P60409 375 aaPredicted RBP4.22□□□□□ -1.73
MSH5-SAPCD1-207ENST00000493662 MT1BP07438 61 aa4.22□□□□□ -1.73
MSH5-SAPCD1-207ENST00000493662 OBSCNQ5VST9 7968 aa4.22□□□□□ -1.73
MSH5-SAPCD1-207ENST00000493662 CRCT1Q9UGL9 99 aa4.2□□□□□ -1.74
MSH5-SAPCD1-207ENST00000493662 KRTAP9-3Q9BYQ3 159 aa4.18□□□□□ -1.74
MSH5-SAPCD1-207ENST00000493662 MT1XP80297 61 aa4.17□□□□□ -1.74
MSH5-SAPCD1-207ENST00000493662 KRTAP4-8A0A0G2JLE6 195 aa4.16□□□□□ -1.74
MSH5-SAPCD1-207ENST00000493662 KRTAP4-8Q9BYQ9 185 aa4.16□□□□□ -1.74
MSH5-SAPCD1-207ENST00000493662 LCE2BO14633 110 aa4.16□□□□□ -1.74
MSH5-SAPCD1-207ENST00000493662 KRTAP10-5P60370 271 aa4.14□□□□□ -1.75
MSH5-SAPCD1-207ENST00000493662 DSTQ03001 7570 aaKnown RBP4.14□□□□□ -1.75
MSH5-SAPCD1-207ENST00000493662 KRTAP19-8Q3LI54 63 aa4.11□□□□□ -1.75
MSH5-SAPCD1-207ENST00000493662 KRTAP8-1Q8IUC2 63 aa4.09□□□□□ -1.76
MSH5-SAPCD1-207ENST00000493662 KRTAP19-5Q3LI72 72 aa4.07□□□□□ -1.76
MSH5-SAPCD1-207ENST00000493662 SYNE1Q8NF91 8797 aaKnown RBP4.05□□□□□ -1.76
MSH5-SAPCD1-207ENST00000493662 FCGBPQ9Y6R7 5405 aaPredicted RBP3.99□□□□□ -1.77
MSH5-SAPCD1-207ENST00000493662 LCE2AQ5TA79 106 aaPredicted RBP3.99□□□□□ -1.77
MSH5-SAPCD1-207ENST00000493662 KRTAP4-7Q9BYR0 210 aa3.93□□□□□ -1.78
MSH5-SAPCD1-207ENST00000493662 SPRR2FQ96RM1 72 aa3.91□□□□□ -1.78
MSH5-SAPCD1-207ENST00000493662 MUC12Q9UKN1 5478 aa3.9□□□□□ -1.79
MSH5-SAPCD1-207ENST00000493662 LCE3CQ5T5A8 94 aa3.89□□□□□ -1.79
MSH5-SAPCD1-207ENST00000493662 SSPOA2VEC9 5147 aa3.89□□□□□ -1.79
MSH5-SAPCD1-207ENST00000493662 SYNE2Q8WXH0 6885 aaKnown RBP3.82□□□□□ -1.8
MSH5-SAPCD1-207ENST00000493662 MACF1Q9UPN3 7388 aaKnown RBP3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 145.4 ms