RNA–Protein interactions for RNA: ENST00000487245.5

HLA-C-208, Transcript of major histocompatibility complex, class I, C, humanhuman

Gene HLA-C, Length 1,880 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-208ENST00000487245 XP32Q5T750 250 aa13.61□□□□□ -0.23
HLA-C-208ENST00000487245 KRTAP17-1Q9BYP8 105 aa13.61□□□□□ -0.23
HLA-C-208ENST00000487245 H1FX-AS1Q4G0G2 97 aa13.6□□□□□ -0.23
HLA-C-208ENST00000487245 MT1HL1P0DM35 61 aa13.59□□□□□ -0.23
HLA-C-208ENST00000487245 PRAC1Q96KF2 57 aa13.59□□□□□ -0.23
HLA-C-208ENST00000487245 ADM2Q7Z4H4 148 aa13.57□□□□□ -0.24
HLA-C-208ENST00000487245 KIAA1109Q2LD37 5005 aa13.51□□□□□ -0.25
HLA-C-208ENST00000487245 DMBT1Q9UGM3 2413 aaPredicted RBP13.49□□□□□ -0.25
HLA-C-208ENST00000487245 KRTAP3-3Q9BYR6 98 aa13.36□□□□□ -0.27
HLA-C-208ENST00000487245 TPRXLQ17RH7 258 aa13.31□□□□□ -0.28
HLA-C-208ENST00000487245 BIRC6Q9NR09 4857 aa13.29□□□□□ -0.28
HLA-C-208ENST00000487245 CSAG1Q6PB30 78 aa13.26□□□□□ -0.29
HLA-C-208ENST00000487245 S4R3F8 94 aa13.25□□□□□ -0.29
HLA-C-208ENST00000487245 KRTAP10-6P60371 365 aaPredicted RBP13.24□□□□□ -0.29
HLA-C-208ENST00000487245 LINC01554Q52M75 96 aa13.24□□□□□ -0.29
HLA-C-208ENST00000487245 KRTAP4-5Q9BYR2 181 aa13.2□□□□□ -0.3
HLA-C-208ENST00000487245 K7ERS5 55 aa13.19□□□□□ -0.3
HLA-C-208ENST00000487245 KRTAP3-2Q9BYR7 98 aa13.16□□□□□ -0.3
HLA-C-208ENST00000487245 MYCBP2O75592 4640 aa13.13□□□□□ -0.31
HLA-C-208ENST00000487245 HERC2O95714 4834 aa13.08□□□□□ -0.32
HLA-C-208ENST00000487245 KRTAP25-1Q3LHN0 102 aa13.02□□□□□ -0.33
HLA-C-208ENST00000487245 KRTAP13-4Q3LI77 160 aa13.02□□□□□ -0.33
HLA-C-208ENST00000487245 ABCA13Q86UQ4 5058 aa12.92□□□□□ -0.34
HLA-C-208ENST00000487245 P0C880 135 aa12.91□□□□□ -0.34
HLA-C-208ENST00000487245 ROMO1P60602 79 aa12.88□□□□□ -0.35
HLA-C-208ENST00000487245 SEC61BP60468 96 aaKnown RBP12.87□□□□□ -0.35
HLA-C-208ENST00000487245 A0A0D9SG42 100 aa12.82□□□□□ -0.36
HLA-C-208ENST00000487245 J3QL48 77 aa12.81□□□□□ -0.36
HLA-C-208ENST00000487245 LRP2P98164 4655 aa12.79□□□□□ -0.36
HLA-C-208ENST00000487245 M0QZ58 72 aa12.65□□□□□ -0.38
HLA-C-208ENST00000487245 LPAP08519 4548 aa12.65□□□□□ -0.38
HLA-C-208ENST00000487245 CRIPTQ9P021 101 aa12.6□□□□□ -0.39
HLA-C-208ENST00000487245 KRTAP12-2P59991 146 aa12.59□□□□□ -0.39
HLA-C-208ENST00000487245 KRTAP12-1P59990 96 aa12.57□□□□□ -0.4
HLA-C-208ENST00000487245 PCLOQ9Y6V0 5065 aa12.53□□□□□ -0.4
HLA-C-208ENST00000487245 KRTAP4-1Q9BYQ7 146 aa12.46□□□□□ -0.41
HLA-C-208ENST00000487245 SPINT4Q6UDR6 99 aa12.42□□□□□ -0.42
HLA-C-208ENST00000487245 MUC17Q685J3 4493 aa12.4□□□□□ -0.42
HLA-C-208ENST00000487245 KRTAP19-2Q3LHN2 52 aa12.28□□□□□ -0.44
HLA-C-208ENST00000487245 C10orf95Q9H7T3 257 aa12.25□□□□□ -0.45
HLA-C-208ENST00000487245 R4GN34 69 aa12.25□□□□□ -0.45
HLA-C-208ENST00000487245 HERC1Q15751 4861 aa12.19□□□□□ -0.46
HLA-C-208ENST00000487245 LORP23490 312 aaPredicted RBP12.04□□□□□ -0.48
HLA-C-208ENST00000487245 HMCN2Q8NDA2 5059 aa12.04□□□□□ -0.48
HLA-C-208ENST00000487245 KRTAP15-1Q3LI76 137 aa11.85□□□□□ -0.51
HLA-C-208ENST00000487245 FLGP20930 4061 aaPredicted RBP11.84□□□□□ -0.51
HLA-C-208ENST00000487245 H3BS24 57 aa11.83□□□□□ -0.52
HLA-C-208ENST00000487245 LCE2CQ5TA81 110 aa11.66□□□□□ -0.54
HLA-C-208ENST00000487245 CAMK2N1Q7Z7J9 78 aa11.59□□□□□ -0.55
HLA-C-208ENST00000487245 MUC2Q02817 5179 aa11.56□□□□□ -0.56
HLA-C-208ENST00000487245 PP632Q6XCG6 107 aa11.53□□□□□ -0.56
HLA-C-208ENST00000487245 UBR4Q5T4S7 5183 aa11.49□□□□□ -0.57
HLA-C-208ENST00000487245 RNF213Q63HN8 5207 aa11.4□□□□□ -0.58
HLA-C-208ENST00000487245 M0R2T5 61 aa11.39□□□□□ -0.59
HLA-C-208ENST00000487245 NDUFAF8A1L188 74 aa11.38□□□□□ -0.59
HLA-C-208ENST00000487245 MT1HP80294 61 aa11.37□□□□□ -0.59
HLA-C-208ENST00000487245 PLAC4Q8WY50 150 aa11.36□□□□□ -0.59
HLA-C-208ENST00000487245 SPRR2GQ9BYE4 73 aa11.34□□□□□ -0.59
HLA-C-208ENST00000487245 KRTAP23-1A1A580 65 aa11.27□□□□□ -0.61
HLA-C-208ENST00000487245 TNP1P09430 55 aa11.22□□□□□ -0.61
HLA-C-208ENST00000487245 KRTAP19-1Q8IUB9 90 aa11.21□□□□□ -0.61
HLA-C-208ENST00000487245 MT2AP02795 61 aa11.13□□□□□ -0.63
HLA-C-208ENST00000487245 KRTAP10-10P60014 251 aa11.11□□□□□ -0.63
HLA-C-208ENST00000487245 MT1FP04733 61 aa11.08□□□□□ -0.64
HLA-C-208ENST00000487245 KRTAP9-8Q9BYQ0 159 aa11.08□□□□□ -0.64
HLA-C-208ENST00000487245 FAT4Q6V0I7 4981 aa11.05□□□□□ -0.64
HLA-C-208ENST00000487245 KRTAP19-8Q3LI54 63 aa10.91□□□□□ -0.66
HLA-C-208ENST00000487245 LUZP6Q538Z0 58 aa10.79□□□□□ -0.68
HLA-C-208ENST00000487245 SPRR5A0A1B0GTR4 108 aa10.73□□□□□ -0.69
HLA-C-208ENST00000487245 MT1BP07438 61 aa10.68□□□□□ -0.7
HLA-C-208ENST00000487245 LCE2AQ5TA79 106 aaPredicted RBP10.68□□□□□ -0.7
HLA-C-208ENST00000487245 KRTAP9-3Q9BYQ3 159 aa10.65□□□□□ -0.7
HLA-C-208ENST00000487245 LCE3AQ5TA76 89 aa10.58□□□□□ -0.72
HLA-C-208ENST00000487245 KRTAP10-5P60370 271 aa10.54□□□□□ -0.72
HLA-C-208ENST00000487245 MT1XP80297 61 aa10.53□□□□□ -0.72
HLA-C-208ENST00000487245 KRTAP8-1Q8IUC2 63 aa10.44□□□□□ -0.74
HLA-C-208ENST00000487245 PRO2289Q9P1D8 64 aa10.36□□□□□ -0.75
HLA-C-208ENST00000487245 KRTAP10-12P60413 245 aa10.27□□□□□ -0.76
HLA-C-208ENST00000487245 A0A0A0MQY5 61 aa10.22□□□□□ -0.77
HLA-C-208ENST00000487245 LCE2BO14633 110 aa10.19□□□□□ -0.78
HLA-C-208ENST00000487245 KRTAP10-7P60409 375 aaPredicted RBP10.15□□□□□ -0.78
HLA-C-208ENST00000487245 KRTAP12-3P60328 96 aa10.12□□□□□ -0.79
HLA-C-208ENST00000487245 LCE2DQ5TA82 110 aaPredicted RBP9.78□□□□□ -0.84
HLA-C-208ENST00000487245 KRTAP19-5Q3LI72 72 aa9.72□□□□□ -0.85
HLA-C-208ENST00000487245 USH2AO75445 5202 aa9.66□□□□□ -0.86
HLA-C-208ENST00000487245 LCE3CQ5T5A8 94 aa9.55□□□□□ -0.88
HLA-C-208ENST00000487245 KRTAP4-8A0A0G2JLE6 195 aa9.53□□□□□ -0.88
HLA-C-208ENST00000487245 KRTAP4-8Q9BYQ9 185 aa9.53□□□□□ -0.88
HLA-C-208ENST00000487245 KRTAP9-2Q9BYQ4 174 aa9.46□□□□□ -0.9
HLA-C-208ENST00000487245 INE1O15225 51 aa9.39□□□□□ -0.91
HLA-C-208ENST00000487245 KRTAP19-6Q3LI70 58 aa9.38□□□□□ -0.91
HLA-C-208ENST00000487245 KRTAP19-4Q3LI73 84 aa9.38□□□□□ -0.91
HLA-C-208ENST00000487245 KRTAP19-7Q3SYF9 63 aa9.38□□□□□ -0.91
HLA-C-208ENST00000487245 SSPOA2VEC9 5147 aa9.36□□□□□ -0.91
HLA-C-208ENST00000487245 FSIP2Q5CZC0 6907 aa9.33□□□□□ -0.92
HLA-C-208ENST00000487245 KMT2DO14686 5537 aa9.21□□□□□ -0.94
HLA-C-208ENST00000487245 MT1EP04732 61 aa9.17□□□□□ -0.94
HLA-C-208ENST00000487245 KRTAP9-6A8MVA2 160 aa9.12□□□□□ -0.95
HLA-C-208ENST00000487245 MT1LQ93083 61 aa9.12□□□□□ -0.95
HLA-C-208ENST00000487245 CRCT1Q9UGL9 99 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms