RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 RELNP78509 3460 aa-0.85□□□□□ -2.55
UPF3B-203ENST00000478840 DNAH8Q96JB1 4490 aa-0.85□□□□□ -2.55
UPF3B-203ENST00000478840 KRTAP20-1Q3LI63 56 aa-0.86□□□□□ -2.55
UPF3B-203ENST00000478840 TMEM167BQ9NRX6 74 aa-0.86□□□□□ -2.55
UPF3B-203ENST00000478840 CHD7Q9P2D1 2997 aa-0.87□□□□□ -2.55
UPF3B-203ENST00000478840 CSMD1Q96PZ7 3565 aa-0.87□□□□□ -2.55
UPF3B-203ENST00000478840 CCDC180Q9P1Z9 1646 aa-0.88□□□□□ -2.55
UPF3B-203ENST00000478840 EYSQ5T1H1 3165 aa-0.88□□□□□ -2.55
UPF3B-203ENST00000478840 LY75O60449 1722 aa-0.88□□□□□ -2.55
UPF3B-203ENST00000478840 SPENQ96T58 3664 aaKnown RBP-0.88□□□□□ -2.55
UPF3B-203ENST00000478840 CROCC2H7BZ55 1655 aa-0.88□□□□□ -2.55
UPF3B-203ENST00000478840 CEP295Q9C0D2 2601 aa-0.88□□□□□ -2.55
UPF3B-203ENST00000478840 CDC42BPAQ5VT25 1732 aa-0.89□□□□□ -2.55
UPF3B-203ENST00000478840 DNAH10Q8IVF4 4471 aa-0.89□□□□□ -2.55
UPF3B-203ENST00000478840 GLI2P10070 1586 aa-0.89□□□□□ -2.55
UPF3B-203ENST00000478840 DYNC2H1Q8NCM8 4307 aaKnown RBP-0.91□□□□□ -2.55
UPF3B-203ENST00000478840 TRRAPQ9Y4A5 3859 aa-0.91□□□□□ -2.55
UPF3B-203ENST00000478840 IGIPA6NJ69 53 aa-0.91□□□□□ -2.56
UPF3B-203ENST00000478840 DMXL2Q8TDJ6 3036 aa-0.91□□□□□ -2.56
UPF3B-203ENST00000478840 S100ZQ8WXG8 99 aa-0.92□□□□□ -2.56
UPF3B-203ENST00000478840 ABRACLQ9P1F3 81 aa-0.92□□□□□ -2.56
UPF3B-203ENST00000478840 ABCA10Q8WWZ4 1543 aa-0.93□□□□□ -2.56
UPF3B-203ENST00000478840 MT1HP80294 61 aa-0.93□□□□□ -2.56
UPF3B-203ENST00000478840 KRTAP19-5Q3LI72 72 aa-0.93□□□□□ -2.56
UPF3B-203ENST00000478840 SMIM5Q71RC9 77 aa-0.93□□□□□ -2.56
UPF3B-203ENST00000478840 EEA1Q15075 1411 aa-0.93□□□□□ -2.56
UPF3B-203ENST00000478840 CFAP46Q8IYW2 2715 aa-0.93□□□□□ -2.56
UPF3B-203ENST00000478840 FRYQ5TBA9 3013 aa-0.93□□□□□ -2.56
UPF3B-203ENST00000478840 ZFHX4Q86UP3 3567 aa-0.93□□□□□ -2.56
UPF3B-203ENST00000478840 RANBP2P49792 3224 aaKnown RBP-0.94□□□□□ -2.56
UPF3B-203ENST00000478840 SMIM31A0A1B0GVY4 71 aa-0.94□□□□□ -2.56
UPF3B-203ENST00000478840 CLPSL2Q6UWE3 100 aa-0.94□□□□□ -2.56
UPF3B-203ENST00000478840 LINC00308Q8TCZ7 52 aa-0.94□□□□□ -2.56
UPF3B-203ENST00000478840 TLN2Q9Y4G6 2542 aa-0.94□□□□□ -2.56
UPF3B-203ENST00000478840 MT1HL1P0DM35 61 aa-0.95□□□□□ -2.56
UPF3B-203ENST00000478840 TRIOO75962 3097 aa-0.96□□□□□ -2.56
UPF3B-203ENST00000478840 ADGRG4Q8IZF6 3080 aa-0.96□□□□□ -2.56
UPF3B-203ENST00000478840 BOD1L1Q8NFC6 3051 aa-0.96□□□□□ -2.56
UPF3B-203ENST00000478840 M0QY20 66 aa-0.96□□□□□ -2.56
UPF3B-203ENST00000478840 DEFB1P60022 68 aa-0.96□□□□□ -2.56
UPF3B-203ENST00000478840 KRTAP19-6Q3LI70 58 aa-0.96□□□□□ -2.56
UPF3B-203ENST00000478840 MYO15AQ9UKN7 3530 aa-0.96□□□□□ -2.56
UPF3B-203ENST00000478840 MT1XP80297 61 aa-0.97□□□□□ -2.56
UPF3B-203ENST00000478840 C5orf42Q9H799 3197 aa-0.98□□□□□ -2.57
UPF3B-203ENST00000478840 A8MTW9 85 aa-0.98□□□□□ -2.57
UPF3B-203ENST00000478840 H0YGX0 51 aa-0.98□□□□□ -2.57
UPF3B-203ENST00000478840 M0QZ58 72 aa-0.98□□□□□ -2.57
UPF3B-203ENST00000478840 ATMQ13315 3056 aa-0.98□□□□□ -2.57
UPF3B-203ENST00000478840 ALS2Q96Q42 1657 aa-0.99□□□□□ -2.57
UPF3B-203ENST00000478840 LRBAP50851 2863 aa-0.99□□□□□ -2.57
UPF3B-203ENST00000478840 SPTBN5Q9NRC6 3674 aaKnown RBP-1□□□□□ -2.57
UPF3B-203ENST00000478840 MAST1Q9Y2H9 1570 aa-1□□□□□ -2.57
UPF3B-203ENST00000478840 SMIM27A0A1W2PRY6 76 aa-1□□□□□ -2.57
UPF3B-203ENST00000478840 MT1BP07438 61 aa-1□□□□□ -2.57
UPF3B-203ENST00000478840 KRTAP8-1Q8IUC2 63 aa-1□□□□□ -2.57
UPF3B-203ENST00000478840 CPS1P31327 1500 aa-1.01□□□□□ -2.57
UPF3B-203ENST00000478840 PRUNE2Q8WUY3 3088 aa-1.02□□□□□ -2.57
UPF3B-203ENST00000478840 MYO9AB2RTY4 2548 aa-1.03□□□□□ -2.57
UPF3B-203ENST00000478840 MT1MQ8N339 61 aa-1.04□□□□□ -2.58
UPF3B-203ENST00000478840 KAAG1Q9UBP8 84 aa-1.04□□□□□ -2.58
UPF3B-203ENST00000478840 TLN1Q9Y490 2541 aaKnown RBP-1.04□□□□□ -2.58
UPF3B-203ENST00000478840 UGGT1Q9NYU2 1555 aa-1.04□□□□□ -2.58
UPF3B-203ENST00000478840 SMR3BP02814 79 aaPredicted RBP-1.05□□□□□ -2.58
UPF3B-203ENST00000478840 MT2AP02795 61 aa-1.06□□□□□ -2.58
UPF3B-203ENST00000478840 MT1GP13640 62 aa-1.06□□□□□ -2.58
UPF3B-203ENST00000478840 FREM2Q5SZK8 3169 aa-1.06□□□□□ -2.58
UPF3B-203ENST00000478840 DMDP11532 3685 aa-1.07□□□□□ -2.58
UPF3B-203ENST00000478840 CSMD2Q7Z408 3487 aa-1.07□□□□□ -2.58
UPF3B-203ENST00000478840 A0A1B0GUL6 1792 aa-1.08□□□□□ -2.58
UPF3B-203ENST00000478840 EFCAB6Q5THR3 1501 aa-1.1□□□□□ -2.58
UPF3B-203ENST00000478840 PRXQ9BXM0 1461 aa-1.1□□□□□ -2.59
UPF3B-203ENST00000478840 MT1EP04732 61 aa-1.1□□□□□ -2.59
UPF3B-203ENST00000478840 MT1LQ93083 61 aa-1.1□□□□□ -2.59
UPF3B-203ENST00000478840 CENPEQ02224 2701 aa-1.11□□□□□ -2.59
UPF3B-203ENST00000478840 WFDC10BQ8IUB3 73 aa-1.12□□□□□ -2.59
UPF3B-203ENST00000478840 SPEGQ15772 3267 aa-1.12□□□□□ -2.59
UPF3B-203ENST00000478840 FAM208AQ9UK61 1670 aaKnown RBP-1.13□□□□□ -2.59
UPF3B-203ENST00000478840 KIF21BO75037 1637 aa-1.13□□□□□ -2.59
UPF3B-203ENST00000478840 WDFY3Q8IZQ1 3526 aa-1.14□□□□□ -2.59
UPF3B-203ENST00000478840 PREX2Q70Z35 1606 aa-1.14□□□□□ -2.59
UPF3B-203ENST00000478840 VPS13CQ709C8 3753 aa-1.14□□□□□ -2.59
UPF3B-203ENST00000478840 CFAP54Q96N23 3096 aa-1.14□□□□□ -2.59
UPF3B-203ENST00000478840 ERICH3Q5RHP9 1530 aa-1.15□□□□□ -2.59
UPF3B-203ENST00000478840 SPTAN1Q13813 2472 aaKnown RBP-1.16□□□□□ -2.59
UPF3B-203ENST00000478840 PLNP26678 52 aa-1.16□□□□□ -2.6
UPF3B-203ENST00000478840 CRYBG3Q68DQ2 2970 aa-1.17□□□□□ -2.6
UPF3B-203ENST00000478840 MGAQ8IWI9 3026 aa-1.17□□□□□ -2.6
UPF3B-203ENST00000478840 DCHS1Q96JQ0 3298 aa-1.17□□□□□ -2.6
UPF3B-203ENST00000478840 CEP350Q5VT06 3117 aa-1.18□□□□□ -2.6
UPF3B-203ENST00000478840 MT1FP04733 61 aa-1.18□□□□□ -2.6
UPF3B-203ENST00000478840 EP400Q96L91 3159 aa-1.18□□□□□ -2.6
UPF3B-203ENST00000478840 AGLP35573 1532 aa-1.19□□□□□ -2.6
UPF3B-203ENST00000478840 WDFY4Q6ZS81 3184 aa-1.19□□□□□ -2.6
UPF3B-203ENST00000478840 DEFB131AP59861 70 aa-1.2□□□□□ -2.6
UPF3B-203ENST00000478840 FRYLO94915 3013 aa-1.21□□□□□ -2.6
UPF3B-203ENST00000478840 ADCY10Q96PN6 1610 aa-1.21□□□□□ -2.6
UPF3B-203ENST00000478840 LINC01546A6NGU7 62 aa-1.22□□□□□ -2.6
UPF3B-203ENST00000478840 LMO7Q8WWI1 1683 aa-1.23□□□□□ -2.61
UPF3B-203ENST00000478840 DNAH14Q0VDD8 3507 aa-1.23□□□□□ -2.61
UPF3B-203ENST00000478840 SPART-AS1P0CW21 52 aa-1.23□□□□□ -2.61
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms