RNA–Protein interactions for RNA: ENST00000475243.5

VAPB-204, Transcript of VAMP associated protein B and C, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAPB, Length 7,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-204ENST00000475243 KRTAP10-4P60372 401 aaPredicted RBP4.73□□□□□ -1.65
VAPB-204ENST00000475243 ALMS1Q8TCU4 4167 aa4.72□□□□□ -1.65
VAPB-204ENST00000475243 LORP23490 312 aaPredicted RBP4.7□□□□□ -1.66
VAPB-204ENST00000475243 DNAH9Q9NYC9 4486 aa4.62□□□□□ -1.67
VAPB-204ENST00000475243 DNAH1Q9P2D7 4330 aa4.62□□□□□ -1.67
VAPB-204ENST00000475243 DNAH2Q9P225 4427 aa4.61□□□□□ -1.67
VAPB-204ENST00000475243 KRTAP10-5P60370 271 aa4.6□□□□□ -1.67
VAPB-204ENST00000475243 KRTAP8-1Q8IUC2 63 aa4.59□□□□□ -1.68
VAPB-204ENST00000475243 KMT2AQ03164 3969 aa4.54□□□□□ -1.68
VAPB-204ENST00000475243 DNAH10Q8IVF4 4471 aa4.54□□□□□ -1.68
VAPB-204ENST00000475243 FRAS1Q86XX4 4008 aa4.53□□□□□ -1.68
VAPB-204ENST00000475243 ANK2Q01484 3957 aa4.51□□□□□ -1.69
VAPB-204ENST00000475243 KRTAP23-1A1A580 65 aa4.51□□□□□ -1.69
VAPB-204ENST00000475243 DNAH3Q8TD57 4116 aa4.48□□□□□ -1.69
VAPB-204ENST00000475243 VPS13BQ7Z7G8 4022 aa4.47□□□□□ -1.69
VAPB-204ENST00000475243 LYSTQ99698 3801 aa4.46□□□□□ -1.7
VAPB-204ENST00000475243 KRTAP4-1Q9BYQ7 146 aa4.44□□□□□ -1.7
VAPB-204ENST00000475243 PLECQ15149 4684 aaKnown RBP4.39□□□□□ -1.71
VAPB-204ENST00000475243 DNAH11Q96DT5 4516 aa4.39□□□□□ -1.71
VAPB-204ENST00000475243 MT1HP80294 61 aa4.39□□□□□ -1.71
VAPB-204ENST00000475243 DNAH5Q8TE73 4624 aa4.38□□□□□ -1.71
VAPB-204ENST00000475243 FAT2Q9NYQ8 4349 aa4.37□□□□□ -1.71
VAPB-204ENST00000475243 CMYA5Q8N3K9 4069 aa4.34□□□□□ -1.72
VAPB-204ENST00000475243 DNAH8Q96JB1 4490 aa4.33□□□□□ -1.72
VAPB-204ENST00000475243 PRKDCP78527 4128 aaKnown RBP4.33□□□□□ -1.72
VAPB-204ENST00000475243 DNAH7Q8WXX0 4024 aa4.29□□□□□ -1.72
VAPB-204ENST00000475243 DNAH17Q9UFH2 4485 aa4.29□□□□□ -1.72
VAPB-204ENST00000475243 MT2AP02795 61 aa4.29□□□□□ -1.72
VAPB-204ENST00000475243 VPS13DQ5THJ4 4388 aa4.29□□□□□ -1.72
VAPB-204ENST00000475243 SPRR2FQ96RM1 72 aa4.28□□□□□ -1.72
VAPB-204ENST00000475243 STARD9Q9P2P6 4700 aa4.27□□□□□ -1.73
VAPB-204ENST00000475243 DYNC2H1Q8NCM8 4307 aaKnown RBP4.25□□□□□ -1.73
VAPB-204ENST00000475243 LRP1BQ9NZR2 4599 aa4.24□□□□□ -1.73
VAPB-204ENST00000475243 KRTAP19-5Q3LI72 72 aa4.24□□□□□ -1.73
VAPB-204ENST00000475243 KRTAP10-7P60409 375 aaPredicted RBP4.24□□□□□ -1.73
VAPB-204ENST00000475243 SPRR2GQ9BYE4 73 aa4.23□□□□□ -1.73
VAPB-204ENST00000475243 DNAH6Q9C0G6 4158 aa4.22□□□□□ -1.73
VAPB-204ENST00000475243 MT1FP04733 61 aa4.22□□□□□ -1.73
VAPB-204ENST00000475243 FAT1Q14517 4588 aa4.2□□□□□ -1.74
VAPB-204ENST00000475243 HECTD4Q9Y4D8 3996 aa4.18□□□□□ -1.74
VAPB-204ENST00000475243 LCE3CQ5T5A8 94 aa4.14□□□□□ -1.75
VAPB-204ENST00000475243 APOBP04114 4563 aaKnown RBP4.06□□□□□ -1.76
VAPB-204ENST00000475243 SACSQ9NZJ4 4579 aa4.05□□□□□ -1.76
VAPB-204ENST00000475243 SPRR2EP22531 72 aa4.02□□□□□ -1.77
VAPB-204ENST00000475243 SPRR2BP35325 72 aa4.02□□□□□ -1.77
VAPB-204ENST00000475243 SPRR2AP35326 72 aa4.02□□□□□ -1.77
VAPB-204ENST00000475243 FAT3Q8TDW7 4589 aa4.02□□□□□ -1.77
VAPB-204ENST00000475243 DYNC1H1Q14204 4646 aaKnown RBP4.01□□□□□ -1.77
VAPB-204ENST00000475243 DNHD1Q96M86 4753 aa4.01□□□□□ -1.77
VAPB-204ENST00000475243 LCE3BQ5TA77 95 aa3.99□□□□□ -1.77
VAPB-204ENST00000475243 MYCBP2O75592 4640 aa3.99□□□□□ -1.77
VAPB-204ENST00000475243 RYR1P21817 5038 aa3.92□□□□□ -1.78
VAPB-204ENST00000475243 PKHD1P08F94 4074 aa3.92□□□□□ -1.78
VAPB-204ENST00000475243 MT1GP13640 62 aa3.91□□□□□ -1.78
VAPB-204ENST00000475243 KRTAP19-1Q8IUB9 90 aa3.91□□□□□ -1.78
VAPB-204ENST00000475243 KRTAP17-1Q9BYP8 105 aa3.9□□□□□ -1.78
VAPB-204ENST00000475243 LRP1Q07954 4544 aaKnown RBP3.9□□□□□ -1.79
VAPB-204ENST00000475243 SPRR5A0A1B0GTR4 108 aa3.87□□□□□ -1.79
VAPB-204ENST00000475243 SPRR2DP22532 72 aa3.87□□□□□ -1.79
VAPB-204ENST00000475243 MT1XP80297 61 aa3.86□□□□□ -1.79
VAPB-204ENST00000475243 KRTAP4-8A0A0G2JLE6 195 aa3.85□□□□□ -1.79
VAPB-204ENST00000475243 KRTAP4-8Q9BYQ9 185 aa3.85□□□□□ -1.79
VAPB-204ENST00000475243 LCE2BO14633 110 aa3.85□□□□□ -1.79
VAPB-204ENST00000475243 KRTAP19-8Q3LI54 63 aa3.85□□□□□ -1.79
VAPB-204ENST00000475243 LPAP08519 4548 aa3.84□□□□□ -1.79
VAPB-204ENST00000475243 PKD1P98161 4303 aa3.83□□□□□ -1.8
VAPB-204ENST00000475243 KRTAP12-4P60329 112 aa3.82□□□□□ -1.8
VAPB-204ENST00000475243 HSPG2P98160 4391 aa3.81□□□□□ -1.8
VAPB-204ENST00000475243 KRTAP19-4Q3LI73 84 aa3.78□□□□□ -1.8
VAPB-204ENST00000475243 KRTAP9-8Q9BYQ0 159 aa3.78□□□□□ -1.8
VAPB-204ENST00000475243 MT1BP07438 61 aa3.77□□□□□ -1.81
VAPB-204ENST00000475243 PKHD1L1Q86WI1 4243 aa3.73□□□□□ -1.81
VAPB-204ENST00000475243 FLGP20930 4061 aaPredicted RBP3.72□□□□□ -1.81
VAPB-204ENST00000475243 KRTAP9-3Q9BYQ3 159 aa3.67□□□□□ -1.82
VAPB-204ENST00000475243 TNXBP22105 4242 aa3.67□□□□□ -1.82
VAPB-204ENST00000475243 LCE3DQ9BYE3 92 aa3.67□□□□□ -1.82
VAPB-204ENST00000475243 LRP2P98164 4655 aa3.66□□□□□ -1.82
VAPB-204ENST00000475243 RYR3Q15413 4870 aa3.65□□□□□ -1.83
VAPB-204ENST00000475243 KRTAP4-7Q9BYR0 210 aa3.64□□□□□ -1.83
VAPB-204ENST00000475243 LCE2CQ5TA81 110 aa3.64□□□□□ -1.83
VAPB-204ENST00000475243 LCE3EQ5T5B0 92 aa3.57□□□□□ -1.84
VAPB-204ENST00000475243 LCE2DQ5TA82 110 aaPredicted RBP3.56□□□□□ -1.84
VAPB-204ENST00000475243 KRTAP19-3Q7Z4W3 81 aa3.56□□□□□ -1.84
VAPB-204ENST00000475243 MT4P47944 62 aa3.53□□□□□ -1.84
VAPB-204ENST00000475243 MT1LQ93083 61 aa3.51□□□□□ -1.85
VAPB-204ENST00000475243 HYDINQ4G0P3 5121 aa3.49□□□□□ -1.85
VAPB-204ENST00000475243 MT1EP04732 61 aa3.48□□□□□ -1.85
VAPB-204ENST00000475243 LOC100996750A0A140TA64 210 aa3.47□□□□□ -1.85
VAPB-204ENST00000475243 KRTAP4-3Q9BYR4 195 aa3.42□□□□□ -1.86
VAPB-204ENST00000475243 KRTAP9-6A0A140TA67 174 aa3.4□□□□□ -1.87
VAPB-204ENST00000475243 KIAA1109Q2LD37 5005 aa3.39□□□□□ -1.87
VAPB-204ENST00000475243 LCE1BQ5T7P3 118 aa3.39□□□□□ -1.87
VAPB-204ENST00000475243 MT1MQ8N339 61 aa3.38□□□□□ -1.87
VAPB-204ENST00000475243 PRM1P04553 51 aa3.38□□□□□ -1.87
VAPB-204ENST00000475243 KRTAP9-2Q9BYQ4 174 aa3.38□□□□□ -1.87
VAPB-204ENST00000475243 KRTAP19-2Q3LHN2 52 aa3.38□□□□□ -1.87
VAPB-204ENST00000475243 LCE1DQ5T752 114 aa3.36□□□□□ -1.87
VAPB-204ENST00000475243 MT3P25713 68 aa3.35□□□□□ -1.87
VAPB-204ENST00000475243 KMT2CQ8NEZ4 4911 aaKnown RBP3.35□□□□□ -1.87
VAPB-204ENST00000475243 HERC2O95714 4834 aa3.34□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms