RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 PCLOQ9Y6V0 5065 aa3.16□□□□□ -1.9
HERC4-209ENST00000473533 KRTAP10-6P60371 365 aaPredicted RBP3.15□□□□□ -1.91
HERC4-209ENST00000473533 LRP1BQ9NZR2 4599 aa3.15□□□□□ -1.91
HERC4-209ENST00000473533 MYCBP2O75592 4640 aa3.15□□□□□ -1.91
HERC4-209ENST00000473533 SPINT4Q6UDR6 99 aa3.14□□□□□ -1.91
HERC4-209ENST00000473533 M0QZ58 72 aa3.13□□□□□ -1.91
HERC4-209ENST00000473533 PKD1P98161 4303 aa3.12□□□□□ -1.91
HERC4-209ENST00000473533 A0A0D9SG42 100 aa3.12□□□□□ -1.91
HERC4-209ENST00000473533 KRTAP3-3Q9BYR6 98 aa3.12□□□□□ -1.91
HERC4-209ENST00000473533 FAT1Q14517 4588 aa3.12□□□□□ -1.91
HERC4-209ENST00000473533 KRTAP10-8P60410 259 aa3.12□□□□□ -1.91
HERC4-209ENST00000473533 VPS13BQ7Z7G8 4022 aa3.11□□□□□ -1.91
HERC4-209ENST00000473533 KRTAP3-2Q9BYR7 98 aa3.11□□□□□ -1.91
HERC4-209ENST00000473533 HERC2O95714 4834 aa3.11□□□□□ -1.91
HERC4-209ENST00000473533 XP32Q5T750 250 aa3.11□□□□□ -1.91
HERC4-209ENST00000473533 KIAA1109Q2LD37 5005 aa3.1□□□□□ -1.91
HERC4-209ENST00000473533 FAT2Q9NYQ8 4349 aa3.09□□□□□ -1.91
HERC4-209ENST00000473533 PKHD1L1Q86WI1 4243 aa3.09□□□□□ -1.92
HERC4-209ENST00000473533 KRTAP13-4Q3LI77 160 aa3.08□□□□□ -1.92
HERC4-209ENST00000473533 PKHD1P08F94 4074 aa3.07□□□□□ -1.92
HERC4-209ENST00000473533 TPRXLQ17RH7 258 aa3.06□□□□□ -1.92
HERC4-209ENST00000473533 FAT3Q8TDW7 4589 aa3.06□□□□□ -1.92
HERC4-209ENST00000473533 Q5VSD8 79 aa3.06□□□□□ -1.92
HERC4-209ENST00000473533 P0C880 135 aa3.05□□□□□ -1.92
HERC4-209ENST00000473533 ABCA13Q86UQ4 5058 aa3.04□□□□□ -1.92
HERC4-209ENST00000473533 APOBP04114 4563 aaKnown RBP3.04□□□□□ -1.92
HERC4-209ENST00000473533 KRTAP12-1P59990 96 aa3.04□□□□□ -1.92
HERC4-209ENST00000473533 KRTAP12-2P59991 146 aa3.02□□□□□ -1.93
HERC4-209ENST00000473533 DYNC1H1Q14204 4646 aaKnown RBP3.01□□□□□ -1.93
HERC4-209ENST00000473533 KRTAP15-1Q3LI76 137 aa3.01□□□□□ -1.93
HERC4-209ENST00000473533 HERC1Q15751 4861 aa2.99□□□□□ -1.93
HERC4-209ENST00000473533 C10orf95Q9H7T3 257 aa2.99□□□□□ -1.93
HERC4-209ENST00000473533 LRP1Q07954 4544 aaKnown RBP2.99□□□□□ -1.93
HERC4-209ENST00000473533 R4GN34 69 aa2.98□□□□□ -1.93
HERC4-209ENST00000473533 HSPG2P98160 4391 aa2.97□□□□□ -1.93
HERC4-209ENST00000473533 NDUFAF8A1L188 74 aa2.96□□□□□ -1.93
HERC4-209ENST00000473533 KRTAP4-5Q9BYR2 181 aa2.96□□□□□ -1.93
HERC4-209ENST00000473533 SEC61BP60468 96 aaKnown RBP2.96□□□□□ -1.94
HERC4-209ENST00000473533 PP632Q6XCG6 107 aa2.95□□□□□ -1.94
HERC4-209ENST00000473533 TNXBP22105 4242 aa2.95□□□□□ -1.94
HERC4-209ENST00000473533 MT1HL1P0DM35 61 aa2.94□□□□□ -1.94
HERC4-209ENST00000473533 PLAC4Q8WY50 150 aa2.89□□□□□ -1.95
HERC4-209ENST00000473533 LPAP08519 4548 aa2.88□□□□□ -1.95
HERC4-209ENST00000473533 LUZP6Q538Z0 58 aa2.87□□□□□ -1.95
HERC4-209ENST00000473533 MUC2Q02817 5179 aa2.85□□□□□ -1.95
HERC4-209ENST00000473533 UBR4Q5T4S7 5183 aa2.85□□□□□ -1.95
HERC4-209ENST00000473533 CAMK2N1Q7Z7J9 78 aa2.85□□□□□ -1.95
HERC4-209ENST00000473533 LRP2P98164 4655 aa2.85□□□□□ -1.95
HERC4-209ENST00000473533 KRTAP23-1A1A580 65 aa2.83□□□□□ -1.96
HERC4-209ENST00000473533 A0A0A0MQY5 61 aa2.81□□□□□ -1.96
HERC4-209ENST00000473533 TNP1P09430 55 aa2.78□□□□□ -1.96
HERC4-209ENST00000473533 J3QL48 77 aa2.78□□□□□ -1.96
HERC4-209ENST00000473533 HMCN2Q8NDA2 5059 aa2.77□□□□□ -1.97
HERC4-209ENST00000473533 RNF213Q63HN8 5207 aa2.76□□□□□ -1.97
HERC4-209ENST00000473533 LORP23490 312 aaPredicted RBP2.74□□□□□ -1.97
HERC4-209ENST00000473533 FAT4Q6V0I7 4981 aa2.7□□□□□ -1.98
HERC4-209ENST00000473533 KRTAP4-1Q9BYQ7 146 aa2.68□□□□□ -1.98
HERC4-209ENST00000473533 KRTAP19-2Q3LHN2 52 aa2.68□□□□□ -1.98
HERC4-209ENST00000473533 SPRR5A0A1B0GTR4 108 aa2.66□□□□□ -1.98
HERC4-209ENST00000473533 MUC17Q685J3 4493 aa2.62□□□□□ -1.99
HERC4-209ENST00000473533 SPRR2GQ9BYE4 73 aa2.61□□□□□ -1.99
HERC4-209ENST00000473533 LCE2BO14633 110 aa2.59□□□□□ -2
HERC4-209ENST00000473533 LCE2AQ5TA79 106 aaPredicted RBP2.57□□□□□ -2
HERC4-209ENST00000473533 FSIP2Q5CZC0 6907 aa2.55□□□□□ -2
HERC4-209ENST00000473533 M0R2T5 61 aa2.55□□□□□ -2
HERC4-209ENST00000473533 INE1O15225 51 aa2.54□□□□□ -2
HERC4-209ENST00000473533 FLGP20930 4061 aaPredicted RBP2.54□□□□□ -2
HERC4-209ENST00000473533 PRO2289Q9P1D8 64 aa2.51□□□□□ -2.01
HERC4-209ENST00000473533 KRTAP19-1Q8IUB9 90 aa2.51□□□□□ -2.01
HERC4-209ENST00000473533 KRTAP8-1Q8IUC2 63 aa2.51□□□□□ -2.01
HERC4-209ENST00000473533 LCE3AQ5TA76 89 aa2.5□□□□□ -2.01
HERC4-209ENST00000473533 OBSCNQ5VST9 7968 aa2.5□□□□□ -2.01
HERC4-209ENST00000473533 KRTAP10-10P60014 251 aa2.49□□□□□ -2.01
HERC4-209ENST00000473533 KRTAP19-8Q3LI54 63 aa2.48□□□□□ -2.01
HERC4-209ENST00000473533 LCE2CQ5TA81 110 aa2.48□□□□□ -2.01
HERC4-209ENST00000473533 KRTAP9-2Q9BYQ4 174 aa2.48□□□□□ -2.01
HERC4-209ENST00000473533 USH2AO75445 5202 aa2.47□□□□□ -2.01
HERC4-209ENST00000473533 LOC100996750A0A140TA64 210 aa2.47□□□□□ -2.01
HERC4-209ENST00000473533 KRTAP4-6Q9BYQ5 205 aa2.47□□□□□ -2.01
HERC4-209ENST00000473533 MT1HP80294 61 aa2.45□□□□□ -2.02
HERC4-209ENST00000473533 MT2AP02795 61 aa2.44□□□□□ -2.02
HERC4-209ENST00000473533 KRTAP10-12P60413 245 aa2.44□□□□□ -2.02
HERC4-209ENST00000473533 KRTAP12-3P60328 96 aa2.43□□□□□ -2.02
HERC4-209ENST00000473533 KMT2DO14686 5537 aa2.43□□□□□ -2.02
HERC4-209ENST00000473533 KRTAP9-6A0A140TA67 174 aa2.42□□□□□ -2.02
HERC4-209ENST00000473533 MT1FP04733 61 aa2.41□□□□□ -2.02
HERC4-209ENST00000473533 KRTAP9-8Q9BYQ0 159 aa2.39□□□□□ -2.03
HERC4-209ENST00000473533 KRTAP10-5P60370 271 aa2.38□□□□□ -2.03
HERC4-209ENST00000473533 MT1XP80297 61 aa2.38□□□□□ -2.03
HERC4-209ENST00000473533 MT1BP07438 61 aa2.37□□□□□ -2.03
HERC4-209ENST00000473533 KRTAP19-4Q3LI73 84 aa2.35□□□□□ -2.03
HERC4-209ENST00000473533 DSTQ03001 7570 aaKnown RBP2.33□□□□□ -2.04
HERC4-209ENST00000473533 SYNE1Q8NF91 8797 aaKnown RBP2.31□□□□□ -2.04
HERC4-209ENST00000473533 CRCT1Q9UGL9 99 aa2.3□□□□□ -2.04
HERC4-209ENST00000473533 KRTAP9-3Q9BYQ3 159 aa2.3□□□□□ -2.04
HERC4-209ENST00000473533 LCE3CQ5T5A8 94 aa2.29□□□□□ -2.04
HERC4-209ENST00000473533 KRTAP10-7P60409 375 aaPredicted RBP2.29□□□□□ -2.04
HERC4-209ENST00000473533 FCGBPQ9Y6R7 5405 aaPredicted RBP2.25□□□□□ -2.05
HERC4-209ENST00000473533 KRTAP19-5Q3LI72 72 aa2.24□□□□□ -2.05
HERC4-209ENST00000473533 KRTAP4-8Q9BYQ9 185 aa2.24□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 278 ms