RNA–Protein interactions for RNA: ENST00000471694.1

CD47-204, Transcript of CD47 molecule, humanhuman

TSL 1 (best)

Gene CD47, Length 6,796 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD47-204ENST00000471694 MT2AP02795 61 aa3.46□□□□□ -1.86
CD47-204ENST00000471694 SPRR2DP22532 72 aa3.46□□□□□ -1.86
CD47-204ENST00000471694 COL7A1Q02388 2944 aa3.46□□□□□ -1.86
CD47-204ENST00000471694 SRRM2Q9UQ35 2752 aaKnown RBP3.45□□□□□ -1.86
CD47-204ENST00000471694 KRTAP4-1Q9BYQ7 146 aa3.45□□□□□ -1.86
CD47-204ENST00000471694 MEGF8Q7Z7M0 2845 aa3.45□□□□□ -1.86
CD47-204ENST00000471694 CSMD2Q7Z408 3487 aa3.44□□□□□ -1.86
CD47-204ENST00000471694 CSMD1Q96PZ7 3565 aa3.43□□□□□ -1.86
CD47-204ENST00000471694 MUC3AQ02505 3323 aa3.43□□□□□ -1.86
CD47-204ENST00000471694 KRTAP23-1A1A580 65 aa3.42□□□□□ -1.86
CD47-204ENST00000471694 BSNQ9UPA5 3926 aa3.42□□□□□ -1.86
CD47-204ENST00000471694 DNAH9Q9NYC9 4486 aa3.41□□□□□ -1.86
CD47-204ENST00000471694 MT1FP04733 61 aa3.37□□□□□ -1.87
CD47-204ENST00000471694 DNAH2Q9P225 4427 aa3.36□□□□□ -1.87
CD47-204ENST00000471694 LCE2BO14633 110 aa3.35□□□□□ -1.87
CD47-204ENST00000471694 KRTAP19-5Q3LI72 72 aa3.33□□□□□ -1.88
CD47-204ENST00000471694 AKAP9Q99996 3911 aa3.3□□□□□ -1.88
CD47-204ENST00000471694 SPRR2GQ9BYE4 73 aa3.29□□□□□ -1.88
CD47-204ENST00000471694 KRTAP17-1Q9BYP8 105 aa3.28□□□□□ -1.88
CD47-204ENST00000471694 FAT2Q9NYQ8 4349 aa3.27□□□□□ -1.89
CD47-204ENST00000471694 DNAH11Q96DT5 4516 aa3.26□□□□□ -1.89
CD47-204ENST00000471694 DNAH5Q8TE73 4624 aa3.25□□□□□ -1.89
CD47-204ENST00000471694 CUBNO60494 3623 aa3.25□□□□□ -1.89
CD47-204ENST00000471694 KRTAP12-4P60329 112 aa3.25□□□□□ -1.89
CD47-204ENST00000471694 VPS13CQ709C8 3753 aa3.23□□□□□ -1.89
CD47-204ENST00000471694 DNAH10Q8IVF4 4471 aa3.22□□□□□ -1.89
CD47-204ENST00000471694 DNAH17Q9UFH2 4485 aa3.21□□□□□ -1.89
CD47-204ENST00000471694 SVEP1Q4LDE5 3571 aa3.2□□□□□ -1.9
CD47-204ENST00000471694 KRTAP19-1Q8IUB9 90 aa3.2□□□□□ -1.9
CD47-204ENST00000471694 PLECQ15149 4684 aaKnown RBP3.19□□□□□ -1.9
CD47-204ENST00000471694 LCE3CQ5T5A8 94 aa3.19□□□□□ -1.9
CD47-204ENST00000471694 LCE2CQ5TA81 110 aa3.19□□□□□ -1.9
CD47-204ENST00000471694 DNAH3Q8TD57 4116 aa3.18□□□□□ -1.9
CD47-204ENST00000471694 SPRR5A0A1B0GTR4 108 aa3.17□□□□□ -1.9
CD47-204ENST00000471694 LCE3BQ5TA77 95 aa3.17□□□□□ -1.9
CD47-204ENST00000471694 CSMD3Q7Z407 3707 aa3.16□□□□□ -1.9
CD47-204ENST00000471694 LCE2DQ5TA82 110 aaPredicted RBP3.16□□□□□ -1.9
CD47-204ENST00000471694 DNAH7Q8WXX0 4024 aa3.14□□□□□ -1.91
CD47-204ENST00000471694 KRTAP9-2Q9BYQ4 174 aa3.13□□□□□ -1.91
CD47-204ENST00000471694 DYNC2H1Q8NCM8 4307 aaKnown RBP3.13□□□□□ -1.91
CD47-204ENST00000471694 VPS13DQ5THJ4 4388 aa3.11□□□□□ -1.91
CD47-204ENST00000471694 LRP1BQ9NZR2 4599 aa3.1□□□□□ -1.91
CD47-204ENST00000471694 MT1GP13640 62 aa3.1□□□□□ -1.91
CD47-204ENST00000471694 DNAH6Q9C0G6 4158 aa3.09□□□□□ -1.91
CD47-204ENST00000471694 DYNC1H1Q14204 4646 aaKnown RBP3.09□□□□□ -1.91
CD47-204ENST00000471694 KRTAP9-6A0A140TA67 174 aa3.08□□□□□ -1.92
CD47-204ENST00000471694 PRKDCP78527 4128 aaKnown RBP3.08□□□□□ -1.92
CD47-204ENST00000471694 MT4P47944 62 aa3.07□□□□□ -1.92
CD47-204ENST00000471694 KRTAP19-4Q3LI73 84 aa3.06□□□□□ -1.92
CD47-204ENST00000471694 VPS13BQ7Z7G8 4022 aa3.05□□□□□ -1.92
CD47-204ENST00000471694 PKHD1L1Q86WI1 4243 aa3.04□□□□□ -1.92
CD47-204ENST00000471694 ZNF469Q96JG9 3925 aaPredicted RBP3.04□□□□□ -1.92
CD47-204ENST00000471694 KRTAP19-8Q3LI54 63 aa3.02□□□□□ -1.93
CD47-204ENST00000471694 ANK2Q01484 3957 aa3□□□□□ -1.93
CD47-204ENST00000471694 FAT3Q8TDW7 4589 aa3□□□□□ -1.93
CD47-204ENST00000471694 SACSQ9NZJ4 4579 aa3□□□□□ -1.93
CD47-204ENST00000471694 STARD9Q9P2P6 4700 aa3□□□□□ -1.93
CD47-204ENST00000471694 KMT2AQ03164 3969 aa2.98□□□□□ -1.93
CD47-204ENST00000471694 KRTAP20-1Q3LI63 56 aa2.98□□□□□ -1.93
CD47-204ENST00000471694 DNHD1Q96M86 4753 aa2.98□□□□□ -1.93
CD47-204ENST00000471694 FAT1Q14517 4588 aa2.98□□□□□ -1.93
CD47-204ENST00000471694 DNAH8Q96JB1 4490 aa2.98□□□□□ -1.93
CD47-204ENST00000471694 CMYA5Q8N3K9 4069 aa2.97□□□□□ -1.93
CD47-204ENST00000471694 KRTAP4-8A0A0G2JLE6 195 aa2.97□□□□□ -1.93
CD47-204ENST00000471694 KRTAP4-8Q9BYQ9 185 aa2.97□□□□□ -1.93
CD47-204ENST00000471694 MT1XP80297 61 aa2.96□□□□□ -1.93
CD47-204ENST00000471694 KRTAP9-8Q9BYQ0 159 aa2.96□□□□□ -1.94
CD47-204ENST00000471694 FRAS1Q86XX4 4008 aa2.96□□□□□ -1.94
CD47-204ENST00000471694 RYR1P21817 5038 aa2.95□□□□□ -1.94
CD47-204ENST00000471694 MT1BP07438 61 aa2.93□□□□□ -1.94
CD47-204ENST00000471694 KRTAP9-3Q9BYQ3 159 aa2.93□□□□□ -1.94
CD47-204ENST00000471694 LRP1Q07954 4544 aaKnown RBP2.92□□□□□ -1.94
CD47-204ENST00000471694 KRTAP19-3Q7Z4W3 81 aa2.89□□□□□ -1.95
CD47-204ENST00000471694 RYR3Q15413 4870 aa2.89□□□□□ -1.95
CD47-204ENST00000471694 KRTAP9-7A8MTY7 169 aa2.87□□□□□ -1.95
CD47-204ENST00000471694 APOBP04114 4563 aaKnown RBP2.87□□□□□ -1.95
CD47-204ENST00000471694 LCE3DQ9BYE3 92 aa2.86□□□□□ -1.95
CD47-204ENST00000471694 HERC1Q15751 4861 aa2.86□□□□□ -1.95
CD47-204ENST00000471694 LCE1BQ5T7P3 118 aa2.85□□□□□ -1.95
CD47-204ENST00000471694 HSPG2P98160 4391 aa2.83□□□□□ -1.96
CD47-204ENST00000471694 LYSTQ99698 3801 aa2.83□□□□□ -1.96
CD47-204ENST00000471694 KRTAP19-6Q3LI70 58 aa2.82□□□□□ -1.96
CD47-204ENST00000471694 LCE1DQ5T752 114 aa2.82□□□□□ -1.96
CD47-204ENST00000471694 PKD1P98161 4303 aa2.78□□□□□ -1.97
CD47-204ENST00000471694 LCE3EQ5T5B0 92 aa2.78□□□□□ -1.97
CD47-204ENST00000471694 MT3P25713 68 aa2.77□□□□□ -1.97
CD47-204ENST00000471694 LCE5AQ5TCM9 118 aa2.75□□□□□ -1.97
CD47-204ENST00000471694 HECTD4Q9Y4D8 3996 aa2.74□□□□□ -1.97
CD47-204ENST00000471694 KRTAP2-3P0C7H8 128 aa2.74□□□□□ -1.97
CD47-204ENST00000471694 KRTAP2-4Q9BYR9 128 aa2.74□□□□□ -1.97
CD47-204ENST00000471694 MT1EP04732 61 aa2.72□□□□□ -1.97
CD47-204ENST00000471694 MT1LQ93083 61 aa2.72□□□□□ -1.97
CD47-204ENST00000471694 PKHD1P08F94 4074 aa2.72□□□□□ -1.97
CD47-204ENST00000471694 KRTAP4-7Q9BYR0 210 aa2.71□□□□□ -1.98
CD47-204ENST00000471694 BIRC6Q9NR09 4857 aa2.71□□□□□ -1.98
CD47-204ENST00000471694 MT1MQ8N339 61 aa2.69□□□□□ -1.98
CD47-204ENST00000471694 LPAP08519 4548 aa2.69□□□□□ -1.98
CD47-204ENST00000471694 MYCBP2O75592 4640 aa2.68□□□□□ -1.98
CD47-204ENST00000471694 HERC2O95714 4834 aa2.67□□□□□ -1.98
CD47-204ENST00000471694 MUC17Q685J3 4493 aa2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms