RNA–Protein interactions for RNA: ENST00000471694.1

CD47-204, Transcript of CD47 molecule, humanhuman

TSL 1 (best)

Gene CD47, Length 6,796 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD47-204ENST00000471694 DCAF8L2P0C7V8 631 aa15.6■□□□□ 0.09
CD47-204ENST00000471694 FAM9AQ8IZU1 332 aaPredicted RBP14.13□□□□□ -0.15
CD47-204ENST00000471694 SUPT5HO00267 1087 aaKnown RBP14□□□□□ -0.17
CD47-204ENST00000471694 EHMT2Q96KQ7 1210 aa13.99□□□□□ -0.17
CD47-204ENST00000471694 SHROOM4Q9ULL8 1493 aa13.83□□□□□ -0.2
CD47-204ENST00000471694 APLP2Q06481 763 aa13.75□□□□□ -0.21
CD47-204ENST00000471694 NISCHQ9Y2I1 1504 aa13.7□□□□□ -0.22
CD47-204ENST00000471694 ATP1B4Q9UN42 357 aaPredicted RBP13.6□□□□□ -0.23
CD47-204ENST00000471694 RANGAP1P46060 587 aaPredicted RBP13.55□□□□□ -0.24
CD47-204ENST00000471694 MYT1LQ9UL68 1186 aa13.48□□□□□ -0.25
CD47-204ENST00000471694 TTBK1Q5TCY1 1321 aaPredicted RBP13.41□□□□□ -0.26
CD47-204ENST00000471694 CHIC1Q5VXU3 224 aa13.23□□□□□ -0.29
CD47-204ENST00000471694 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.2□□□□□ -0.3
CD47-204ENST00000471694 HNRNPUL2Q1KMD3 747 aaKnown RBP13.2□□□□□ -0.3
CD47-204ENST00000471694 PELP1Q8IZL8 1130 aaKnown RBP13.19□□□□□ -0.3
CD47-204ENST00000471694 UBTFP17480 764 aaKnown RBP13.06□□□□□ -0.32
CD47-204ENST00000471694 TRIM41Q8WV44 630 aa12.96□□□□□ -0.34
CD47-204ENST00000471694 SLC4A1APQ9BWU0 796 aaKnown RBP12.91□□□□□ -0.34
CD47-204ENST00000471694 PCGF6Q9BYE7 350 aa12.84□□□□□ -0.35
CD47-204ENST00000471694 POLR3GLQ9BT43 218 aa12.83□□□□□ -0.35
CD47-204ENST00000471694 FBLN2P98095 1184 aa12.79□□□□□ -0.36
CD47-204ENST00000471694 ERICH6Q7L0X2 663 aa12.76□□□□□ -0.37
CD47-204ENST00000471694 BCANQ96GW7 911 aa12.74□□□□□ -0.37
CD47-204ENST00000471694 ITGAEP38570 1179 aa12.72□□□□□ -0.37
CD47-204ENST00000471694 PABPN1Q86U42 306 aaKnown RBP eCLIP12.71□□□□□ -0.37
CD47-204ENST00000471694 PLPPR3Q6T4P5 718 aa12.7□□□□□ -0.38
CD47-204ENST00000471694 CCER1Q8TC90 406 aaPredicted RBP12.7□□□□□ -0.38
CD47-204ENST00000471694 ABCC9O60706 1549 aa12.65□□□□□ -0.38
CD47-204ENST00000471694 CNGB1Q14028 1251 aaPredicted RBP12.64□□□□□ -0.39
CD47-204ENST00000471694 ESF1Q9H501 851 aaKnown RBP12.59□□□□□ -0.39
CD47-204ENST00000471694 SLC24A1O60721 1099 aa12.58□□□□□ -0.4
CD47-204ENST00000471694 PPARGC1BQ86YN6 1023 aaKnown RBP12.55□□□□□ -0.4
CD47-204ENST00000471694 NEFLP07196 543 aa12.53□□□□□ -0.4
CD47-204ENST00000471694 NPM1P06748 294 aaKnown RBP eCLIP12.44□□□□□ -0.42
CD47-204ENST00000471694 TRIM52Q96A61 297 aa12.41□□□□□ -0.42
CD47-204ENST00000471694 DAXXQ9UER7 740 aaPredicted RBP12.41□□□□□ -0.42
CD47-204ENST00000471694 FAM50AQ14320 339 aaKnown RBP12.38□□□□□ -0.43
CD47-204ENST00000471694 STAG3Q9UJ98 1225 aa12.38□□□□□ -0.43
CD47-204ENST00000471694 CENPBP07199 599 aaPredicted RBP12.38□□□□□ -0.43
CD47-204ENST00000471694 YTHDC1Q96MU7 727 aaKnown RBP12.37□□□□□ -0.43
CD47-204ENST00000471694 ARID3CA6NKF2 412 aa12.35□□□□□ -0.43
CD47-204ENST00000471694 SCAF1Q9H7N4 1312 aaKnown RBP12.32□□□□□ -0.44
CD47-204ENST00000471694 ZEB1P37275 1124 aaPredicted RBP12.32□□□□□ -0.44
CD47-204ENST00000471694 A0A0G2JS52 829 aa12.29□□□□□ -0.44
CD47-204ENST00000471694 ZNF326Q5BKZ1 582 aaKnown RBP12.28□□□□□ -0.44
CD47-204ENST00000471694 ZBTB47Q9UFB7 747 aaPredicted RBP12.26□□□□□ -0.45
CD47-204ENST00000471694 CLSPNQ9HAW4 1339 aa12.25□□□□□ -0.45
CD47-204ENST00000471694 NEFMP07197 916 aa12.24□□□□□ -0.45
CD47-204ENST00000471694 BCL11AQ9H165 835 aa12.24□□□□□ -0.45
CD47-204ENST00000471694 ZNF777Q9ULD5 760 aaPredicted RBP12.24□□□□□ -0.45
CD47-204ENST00000471694 CHGAP10645 457 aaKnown RBP12.23□□□□□ -0.45
CD47-204ENST00000471694 TRHP20396 242 aaPredicted RBP12.16□□□□□ -0.46
CD47-204ENST00000471694 P3H3Q8IVL6 736 aa12.16□□□□□ -0.46
CD47-204ENST00000471694 PLEKHG5O94827 1062 aa12.13□□□□□ -0.47
CD47-204ENST00000471694 ARID4BQ4LE39 1312 aaPredicted RBP12.12□□□□□ -0.47
CD47-204ENST00000471694 C14orf37Q86TY3 774 aa12.12□□□□□ -0.47
CD47-204ENST00000471694 NEUROD1Q13562 356 aa12.11□□□□□ -0.47
CD47-204ENST00000471694 HAP1P54257 671 aaPredicted RBP12.09□□□□□ -0.47
CD47-204ENST00000471694 ZBTB7CA1YPR0 619 aa12.09□□□□□ -0.47
CD47-204ENST00000471694 CDK11AQ9UQ88 783 aaPredicted RBP12.08□□□□□ -0.48
CD47-204ENST00000471694 ZNF316A6NFI3 1004 aaPredicted RBP12.07□□□□□ -0.48
CD47-204ENST00000471694 CANXP27824 592 aaKnown RBP12.06□□□□□ -0.48
CD47-204ENST00000471694 SENP3Q9H4L4 574 aaPredicted RBP12.03□□□□□ -0.48
CD47-204ENST00000471694 CHMP7Q8WUX9 453 aaPredicted RBP12□□□□□ -0.49
CD47-204ENST00000471694 NPM2Q86SE8 214 aaKnown RBP12□□□□□ -0.49
CD47-204ENST00000471694 MYT1Q01538 1121 aa11.98□□□□□ -0.49
CD47-204ENST00000471694 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.97□□□□□ -0.49
CD47-204ENST00000471694 AEBP2Q6ZN18 517 aaPredicted RBP11.96□□□□□ -0.49
CD47-204ENST00000471694 PPP1R15AO75807 674 aaPredicted RBP11.96□□□□□ -0.5
CD47-204ENST00000471694 LOC105371045A0A1W2PR82 267 aa11.92□□□□□ -0.5
CD47-204ENST00000471694 TRIM26Q12899 539 aaPredicted RBP11.91□□□□□ -0.5
CD47-204ENST00000471694 KCNH8Q96L42 1107 aa11.9□□□□□ -0.51
CD47-204ENST00000471694 ERCC6Q03468 1493 aa11.89□□□□□ -0.51
CD47-204ENST00000471694 ARXQ96QS3 562 aa11.86□□□□□ -0.51
CD47-204ENST00000471694 NPHP1O15259 732 aa11.85□□□□□ -0.51
CD47-204ENST00000471694 SCRIBQ14160 1630 aa11.82□□□□□ -0.52
CD47-204ENST00000471694 LMOD2Q6P5Q4 547 aa11.81□□□□□ -0.52
CD47-204ENST00000471694 ANP32CO43423 234 aa11.77□□□□□ -0.53
CD47-204ENST00000471694 TSPY4P0CV99 314 aa11.75□□□□□ -0.53
CD47-204ENST00000471694 TSPY10P0CW01 314 aa11.75□□□□□ -0.53
CD47-204ENST00000471694 MLECQ14165 292 aa11.71□□□□□ -0.53
CD47-204ENST00000471694 RTL5Q5HYW3 569 aaPredicted RBP11.7□□□□□ -0.54
CD47-204ENST00000471694 CHIC2Q9UKJ5 165 aa11.7□□□□□ -0.54
CD47-204ENST00000471694 KDM2AQ9Y2K7 1162 aa11.67□□□□□ -0.54
CD47-204ENST00000471694 TULP1O00294 542 aaPredicted RBP11.66□□□□□ -0.54
CD47-204ENST00000471694 CDK11BP21127 795 aaKnown RBP11.65□□□□□ -0.54
CD47-204ENST00000471694 PLEKHD1A6NEE1 506 aa11.63□□□□□ -0.55
CD47-204ENST00000471694 CCDC9Q9Y3X0 531 aaKnown RBP11.62□□□□□ -0.55
CD47-204ENST00000471694 CSRNP3Q8WYN3 585 aa11.6□□□□□ -0.55
CD47-204ENST00000471694 TMC1Q8TDI8 760 aa11.6□□□□□ -0.55
CD47-204ENST00000471694 HSP90AA1P07900 732 aaKnown RBP11.58□□□□□ -0.56
CD47-204ENST00000471694 HRCP23327 699 aa11.57□□□□□ -0.56
CD47-204ENST00000471694 RB1CC1Q8TDY2 1594 aa11.57□□□□□ -0.56
CD47-204ENST00000471694 WDR43Q15061 677 aaKnown RBP eCLIP11.56□□□□□ -0.56
CD47-204ENST00000471694 PHF23Q9BUL5 403 aaPredicted RBP11.56□□□□□ -0.56
CD47-204ENST00000471694 PPM1GO15355 546 aaPredicted RBP11.56□□□□□ -0.56
CD47-204ENST00000471694 SALL2Q9Y467 1007 aaPredicted RBP11.55□□□□□ -0.56
CD47-204ENST00000471694 TONSLQ96HA7 1378 aa11.54□□□□□ -0.56
CD47-204ENST00000471694 MTUS2Q5JR59 1369 aa11.54□□□□□ -0.56
CD47-204ENST00000471694 POGKQ9P215 609 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms