RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 LCA10Q71F78 164 aa4.92□□□□□ -1.62
UPF2-204ENST00000460569 CCDC179H3BU77 68 aa4.91□□□□□ -1.62
UPF2-204ENST00000460569 NDUFC1O43677 76 aa4.9□□□□□ -1.63
UPF2-204ENST00000460569 SPANXA2-OT1Q8N9U9 137 aa4.9□□□□□ -1.63
UPF2-204ENST00000460569 CYSTM1Q9H1C7 97 aa4.9□□□□□ -1.63
UPF2-204ENST00000460569 H7BZZ5 65 aa4.87□□□□□ -1.63
UPF2-204ENST00000460569 ACYP2P14621 99 aa4.87□□□□□ -1.63
UPF2-204ENST00000460569 CSAG1Q6PB30 78 aa4.86□□□□□ -1.63
UPF2-204ENST00000460569 KRTAP9-8Q9BYQ0 159 aa4.83□□□□□ -1.64
UPF2-204ENST00000460569 MT2AP02795 61 aa4.82□□□□□ -1.64
UPF2-204ENST00000460569 H3BS24 57 aa4.81□□□□□ -1.64
UPF2-204ENST00000460569 CHKB-CPT1BH3BT56 60 aa4.81□□□□□ -1.64
UPF2-204ENST00000460569 MT1FP04733 61 aa4.78□□□□□ -1.64
UPF2-204ENST00000460569 KRTAP10-10P60014 251 aa4.78□□□□□ -1.64
UPF2-204ENST00000460569 COA5Q86WW8 74 aa4.77□□□□□ -1.65
UPF2-204ENST00000460569 SPTSSBQ8NFR3 76 aa4.76□□□□□ -1.65
UPF2-204ENST00000460569 ATP5EP56381 51 aaPredicted RBP4.75□□□□□ -1.65
UPF2-204ENST00000460569 TMEM258P61165 79 aa4.74□□□□□ -1.65
UPF2-204ENST00000460569 PCP4P48539 62 aa4.72□□□□□ -1.65
UPF2-204ENST00000460569 H0YAA0 97 aa4.71□□□□□ -1.66
UPF2-204ENST00000460569 ADM2Q7Z4H4 148 aa4.7□□□□□ -1.66
UPF2-204ENST00000460569 KRTAP9-3Q9BYQ3 159 aa4.67□□□□□ -1.66
UPF2-204ENST00000460569 KRTAP9-2Q9BYQ4 174 aa4.67□□□□□ -1.66
UPF2-204ENST00000460569 P0C880 135 aa4.62□□□□□ -1.67
UPF2-204ENST00000460569 CRIPTQ9P021 101 aa4.61□□□□□ -1.67
UPF2-204ENST00000460569 SERP1Q9Y6X1 66 aa4.59□□□□□ -1.67
UPF2-204ENST00000460569 KRTAP19-1Q8IUB9 90 aa4.58□□□□□ -1.68
UPF2-204ENST00000460569 SEC61GP60059 68 aa4.57□□□□□ -1.68
UPF2-204ENST00000460569 SPRR2GQ9BYE4 73 aa4.57□□□□□ -1.68
UPF2-204ENST00000460569 R4GN34 69 aa4.56□□□□□ -1.68
UPF2-204ENST00000460569 M0QZ58 72 aa4.54□□□□□ -1.68
UPF2-204ENST00000460569 A0A1B0GU69 56 aa4.52□□□□□ -1.69
UPF2-204ENST00000460569 KRTAP19-8Q3LI54 63 aa4.5□□□□□ -1.69
UPF2-204ENST00000460569 Q5VV11 94 aa4.49□□□□□ -1.69
UPF2-204ENST00000460569 LINC01558Q9Y6Z2 57 aa4.48□□□□□ -1.69
UPF2-204ENST00000460569 LINC01554Q52M75 96 aa4.47□□□□□ -1.69
UPF2-204ENST00000460569 PRR15LQ9BU68 103 aa4.47□□□□□ -1.69
UPF2-204ENST00000460569 MT1BP07438 61 aa4.46□□□□□ -1.7
UPF2-204ENST00000460569 CRCT1Q9UGL9 99 aa4.46□□□□□ -1.7
UPF2-204ENST00000460569 A0A1B0GU33 70 aa4.45□□□□□ -1.7
UPF2-204ENST00000460569 KRTAP13-4Q3LI77 160 aa4.44□□□□□ -1.7
UPF2-204ENST00000460569 USH2AO75445 5202 aa4.43□□□□□ -1.7
UPF2-204ENST00000460569 SMIM26A0A096LP01 95 aa4.42□□□□□ -1.7
UPF2-204ENST00000460569 RPS28P62857 69 aaKnown RBP4.42□□□□□ -1.7
UPF2-204ENST00000460569 KRTAP9-6A0A140TA67 174 aa4.41□□□□□ -1.7
UPF2-204ENST00000460569 V9GYY9 64 aa4.41□□□□□ -1.7
UPF2-204ENST00000460569 SPATA8Q6RVD6 105 aa4.4□□□□□ -1.71
UPF2-204ENST00000460569 FSIP2Q5CZC0 6907 aa4.4□□□□□ -1.71
UPF2-204ENST00000460569 Q1T7F1 81 aa4.39□□□□□ -1.71
UPF2-204ENST00000460569 PLAC4Q8WY50 150 aa4.39□□□□□ -1.71
UPF2-204ENST00000460569 KRTAP19-6Q3LI70 58 aa4.37□□□□□ -1.71
UPF2-204ENST00000460569 A0A0D9SG42 100 aa4.36□□□□□ -1.71
UPF2-204ENST00000460569 PSPHP1O15172 72 aa4.35□□□□□ -1.71
UPF2-204ENST00000460569 A6NN06 94 aa4.34□□□□□ -1.71
UPF2-204ENST00000460569 SSPOA2VEC9 5147 aa4.34□□□□□ -1.71
UPF2-204ENST00000460569 SVIPQ8NHG7 77 aa4.33□□□□□ -1.72
UPF2-204ENST00000460569 UQCR11O14957 56 aa4.32□□□□□ -1.72
UPF2-204ENST00000460569 A8MU10 97 aa4.3□□□□□ -1.72
UPF2-204ENST00000460569 KRTAP10-5P60370 271 aa4.3□□□□□ -1.72
UPF2-204ENST00000460569 SPINT4Q6UDR6 99 aa4.27□□□□□ -1.73
UPF2-204ENST00000460569 PRO2289Q9P1D8 64 aa4.27□□□□□ -1.73
UPF2-204ENST00000460569 KRTAP12-1P59990 96 aa4.26□□□□□ -1.73
UPF2-204ENST00000460569 MT1XP80297 61 aa4.26□□□□□ -1.73
UPF2-204ENST00000460569 MIR22HGQ0VDD5 57 aa4.26□□□□□ -1.73
UPF2-204ENST00000460569 CAMK2N1Q7Z7J9 78 aa4.25□□□□□ -1.73
UPF2-204ENST00000460569 KRTAP12-2P59991 146 aa4.24□□□□□ -1.73
UPF2-204ENST00000460569 A6NED7 52 aa4.23□□□□□ -1.73
UPF2-204ENST00000460569 FCGBPQ9Y6R7 5405 aaPredicted RBP4.2□□□□□ -1.74
UPF2-204ENST00000460569 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.14□□□□□ -1.75
UPF2-204ENST00000460569 K7ERS5 55 aa4.13□□□□□ -1.75
UPF2-204ENST00000460569 KRTAP19-4Q3LI73 84 aa4.1□□□□□ -1.75
UPF2-204ENST00000460569 CDC42SE1Q9NRR8 79 aa4.09□□□□□ -1.75
UPF2-204ENST00000460569 KRTAP10-7P60409 375 aaPredicted RBP4.08□□□□□ -1.76
UPF2-204ENST00000460569 KRTAP23-1A1A580 65 aa4.05□□□□□ -1.76
UPF2-204ENST00000460569 C10orf95Q9H7T3 257 aa4.04□□□□□ -1.76
UPF2-204ENST00000460569 KRTAP10-12P60413 245 aa4.03□□□□□ -1.76
UPF2-204ENST00000460569 MACF1Q9UPN3 7388 aaKnown RBP4.02□□□□□ -1.77
UPF2-204ENST00000460569 KRTAP9-7A8MTY7 169 aa4.01□□□□□ -1.77
UPF2-204ENST00000460569 LOC100996750A0A140TA64 210 aa4□□□□□ -1.77
UPF2-204ENST00000460569 KRTAP4-6Q9BYQ5 205 aa4□□□□□ -1.77
UPF2-204ENST00000460569 BRK1Q8WUW1 75 aa3.99□□□□□ -1.77
UPF2-204ENST00000460569 KRTAP4-8A0A0G2JLE6 195 aa3.98□□□□□ -1.77
UPF2-204ENST00000460569 TNP1P09430 55 aa3.98□□□□□ -1.77
UPF2-204ENST00000460569 KRTAP4-8Q9BYQ9 185 aa3.98□□□□□ -1.77
UPF2-204ENST00000460569 KRTAP8-1Q8IUC2 63 aa3.97□□□□□ -1.77
UPF2-204ENST00000460569 KRTAP6-3Q3LI67 103 aa3.96□□□□□ -1.78
UPF2-204ENST00000460569 SYNE2Q8WXH0 6885 aaKnown RBP3.91□□□□□ -1.78
UPF2-204ENST00000460569 KRTAP5-9P26371 169 aa3.9□□□□□ -1.79
UPF2-204ENST00000460569 KRTAP25-1Q3LHN0 102 aa3.9□□□□□ -1.79
UPF2-204ENST00000460569 KMT2DO14686 5537 aa3.89□□□□□ -1.79
UPF2-204ENST00000460569 ROMO1P60602 79 aa3.89□□□□□ -1.79
UPF2-204ENST00000460569 SPRR2FQ96RM1 72 aa3.89□□□□□ -1.79
UPF2-204ENST00000460569 LCE3AQ5TA76 89 aa3.86□□□□□ -1.79
UPF2-204ENST00000460569 KRTAP4-12Q9BQ66 201 aa3.8□□□□□ -1.8
UPF2-204ENST00000460569 KRTAP19-5Q3LI72 72 aa3.79□□□□□ -1.8
UPF2-204ENST00000460569 KRTAP19-7Q3SYF9 63 aa3.79□□□□□ -1.8
UPF2-204ENST00000460569 SPRR2EP22531 72 aa3.76□□□□□ -1.81
UPF2-204ENST00000460569 SPRR2BP35325 72 aa3.76□□□□□ -1.81
UPF2-204ENST00000460569 SPRR2AP35326 72 aa3.76□□□□□ -1.81
UPF2-204ENST00000460569 MT1EP04732 61 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms