RNA–Protein interactions for RNA: ENST00000444061.7

SMARCA4-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SMARCA4, Length 4,938 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-204ENST00000444061 PRO2289Q9P1D8 64 aa6.83□□□□□ -1.32
SMARCA4-204ENST00000444061 KRTAP3-1Q9BYR8 98 aa6.81□□□□□ -1.32
SMARCA4-204ENST00000444061 DNAH17Q9UFH2 4485 aa6.81□□□□□ -1.32
SMARCA4-204ENST00000444061 LRP1BQ9NZR2 4599 aa6.8□□□□□ -1.32
SMARCA4-204ENST00000444061 RYR1P21817 5038 aa6.74□□□□□ -1.33
SMARCA4-204ENST00000444061 FAT1Q14517 4588 aa6.74□□□□□ -1.33
SMARCA4-204ENST00000444061 DNAH3Q8TD57 4116 aa6.72□□□□□ -1.33
SMARCA4-204ENST00000444061 KIAA1109Q2LD37 5005 aa6.7□□□□□ -1.34
SMARCA4-204ENST00000444061 FAT2Q9NYQ8 4349 aa6.66□□□□□ -1.34
SMARCA4-204ENST00000444061 DYNC2H1Q8NCM8 4307 aaKnown RBP6.65□□□□□ -1.34
SMARCA4-204ENST00000444061 DNAH2Q9P225 4427 aa6.65□□□□□ -1.34
SMARCA4-204ENST00000444061 RYR3Q15413 4870 aa6.65□□□□□ -1.35
SMARCA4-204ENST00000444061 CMYA5Q8N3K9 4069 aa6.63□□□□□ -1.35
SMARCA4-204ENST00000444061 KMT2AQ03164 3969 aa6.6□□□□□ -1.35
SMARCA4-204ENST00000444061 RYR2Q92736 4967 aa6.57□□□□□ -1.36
SMARCA4-204ENST00000444061 SACSQ9NZJ4 4579 aa6.57□□□□□ -1.36
SMARCA4-204ENST00000444061 KRTAP17-1Q9BYP8 105 aa6.54□□□□□ -1.36
SMARCA4-204ENST00000444061 KRTAP12-2P59991 146 aa6.52□□□□□ -1.37
SMARCA4-204ENST00000444061 BIRC6Q9NR09 4857 aa6.5□□□□□ -1.37
SMARCA4-204ENST00000444061 KRTAP12-1P59990 96 aa6.47□□□□□ -1.37
SMARCA4-204ENST00000444061 DNAH6Q9C0G6 4158 aa6.47□□□□□ -1.37
SMARCA4-204ENST00000444061 KRTAP10-6P60371 365 aaPredicted RBP6.46□□□□□ -1.38
SMARCA4-204ENST00000444061 KRTAP3-3Q9BYR6 98 aa6.45□□□□□ -1.38
SMARCA4-204ENST00000444061 KRTAP4-1Q9BYQ7 146 aa6.45□□□□□ -1.38
SMARCA4-204ENST00000444061 KRTAP13-4Q3LI77 160 aa6.43□□□□□ -1.38
SMARCA4-204ENST00000444061 APOBP04114 4563 aaKnown RBP6.4□□□□□ -1.38
SMARCA4-204ENST00000444061 LYSTQ99698 3801 aa6.4□□□□□ -1.39
SMARCA4-204ENST00000444061 HERC2O95714 4834 aa6.37□□□□□ -1.39
SMARCA4-204ENST00000444061 DNAH7Q8WXX0 4024 aa6.37□□□□□ -1.39
SMARCA4-204ENST00000444061 HYDINQ4G0P3 5121 aa6.34□□□□□ -1.4
SMARCA4-204ENST00000444061 VPS13BQ7Z7G8 4022 aa6.33□□□□□ -1.4
SMARCA4-204ENST00000444061 DNAH8Q96JB1 4490 aa6.33□□□□□ -1.4
SMARCA4-204ENST00000444061 KRTAP3-2Q9BYR7 98 aa6.32□□□□□ -1.4
SMARCA4-204ENST00000444061 KRTAP15-1Q3LI76 137 aa6.31□□□□□ -1.4
SMARCA4-204ENST00000444061 MT1HP80294 61 aa6.3□□□□□ -1.4
SMARCA4-204ENST00000444061 KMT2CQ8NEZ4 4911 aaKnown RBP6.27□□□□□ -1.4
SMARCA4-204ENST00000444061 LRP1Q07954 4544 aaKnown RBP6.24□□□□□ -1.41
SMARCA4-204ENST00000444061 HSPG2P98160 4391 aa6.19□□□□□ -1.42
SMARCA4-204ENST00000444061 MYCBP2O75592 4640 aa6.17□□□□□ -1.42
SMARCA4-204ENST00000444061 LORP23490 312 aaPredicted RBP6.15□□□□□ -1.43
SMARCA4-204ENST00000444061 PKHD1P08F94 4074 aa6.12□□□□□ -1.43
SMARCA4-204ENST00000444061 HECTD4Q9Y4D8 3996 aa6.12□□□□□ -1.43
SMARCA4-204ENST00000444061 MT2AP02795 61 aa6.12□□□□□ -1.43
SMARCA4-204ENST00000444061 FAT3Q8TDW7 4589 aa6.12□□□□□ -1.43
SMARCA4-204ENST00000444061 INE1O15225 51 aa6.09□□□□□ -1.43
SMARCA4-204ENST00000444061 EPPK1P58107 5090 aaKnown RBP6.05□□□□□ -1.44
SMARCA4-204ENST00000444061 KRTAP10-12P60413 245 aa6.03□□□□□ -1.44
SMARCA4-204ENST00000444061 PKD1P98161 4303 aa6.01□□□□□ -1.45
SMARCA4-204ENST00000444061 MT1FP04733 61 aa6.01□□□□□ -1.45
SMARCA4-204ENST00000444061 HERC1Q15751 4861 aa5.99□□□□□ -1.45
SMARCA4-204ENST00000444061 PCLOQ9Y6V0 5065 aa5.97□□□□□ -1.45
SMARCA4-204ENST00000444061 KRTAP23-1A1A580 65 aa5.96□□□□□ -1.46
SMARCA4-204ENST00000444061 FRAS1Q86XX4 4008 aa5.93□□□□□ -1.46
SMARCA4-204ENST00000444061 SPRR2GQ9BYE4 73 aa5.92□□□□□ -1.46
SMARCA4-204ENST00000444061 LRP2P98164 4655 aa5.91□□□□□ -1.46
SMARCA4-204ENST00000444061 ABCA13Q86UQ4 5058 aa5.91□□□□□ -1.46
SMARCA4-204ENST00000444061 PKHD1L1Q86WI1 4243 aa5.83□□□□□ -1.48
SMARCA4-204ENST00000444061 KRTAP8-1Q8IUC2 63 aa5.83□□□□□ -1.48
SMARCA4-204ENST00000444061 LCE2CQ5TA81 110 aa5.8□□□□□ -1.48
SMARCA4-204ENST00000444061 KRTAP12-3P60328 96 aa5.77□□□□□ -1.49
SMARCA4-204ENST00000444061 LCE3AQ5TA76 89 aa5.75□□□□□ -1.49
SMARCA4-204ENST00000444061 KRTAP9-8Q9BYQ0 159 aa5.71□□□□□ -1.5
SMARCA4-204ENST00000444061 LPAP08519 4548 aa5.67□□□□□ -1.5
SMARCA4-204ENST00000444061 KRTAP19-1Q8IUB9 90 aa5.67□□□□□ -1.5
SMARCA4-204ENST00000444061 TNXBP22105 4242 aa5.65□□□□□ -1.51
SMARCA4-204ENST00000444061 KRTAP19-8Q3LI54 63 aa5.65□□□□□ -1.51
SMARCA4-204ENST00000444061 KRTAP19-2Q3LHN2 52 aa5.62□□□□□ -1.51
SMARCA4-204ENST00000444061 CRCT1Q9UGL9 99 aa5.61□□□□□ -1.51
SMARCA4-204ENST00000444061 KRTAP9-3Q9BYQ3 159 aa5.56□□□□□ -1.52
SMARCA4-204ENST00000444061 SPRR2FQ96RM1 72 aa5.55□□□□□ -1.52
SMARCA4-204ENST00000444061 MT1BP07438 61 aa5.5□□□□□ -1.53
SMARCA4-204ENST00000444061 KRTAP10-5P60370 271 aa5.5□□□□□ -1.53
SMARCA4-204ENST00000444061 RNF213Q63HN8 5207 aa5.47□□□□□ -1.53
SMARCA4-204ENST00000444061 UBR4Q5T4S7 5183 aa5.46□□□□□ -1.54
SMARCA4-204ENST00000444061 HMCN2Q8NDA2 5059 aa5.43□□□□□ -1.54
SMARCA4-204ENST00000444061 LCE2AQ5TA79 106 aaPredicted RBP5.43□□□□□ -1.54
SMARCA4-204ENST00000444061 FAT4Q6V0I7 4981 aa5.4□□□□□ -1.54
SMARCA4-204ENST00000444061 MT1XP80297 61 aa5.4□□□□□ -1.55
SMARCA4-204ENST00000444061 KRTAP9-2Q9BYQ4 174 aa5.39□□□□□ -1.55
SMARCA4-204ENST00000444061 MUC17Q685J3 4493 aa5.38□□□□□ -1.55
SMARCA4-204ENST00000444061 LCE2BO14633 110 aa5.38□□□□□ -1.55
SMARCA4-204ENST00000444061 KRTAP19-5Q3LI72 72 aa5.36□□□□□ -1.55
SMARCA4-204ENST00000444061 KRTAP10-7P60409 375 aaPredicted RBP5.36□□□□□ -1.55
SMARCA4-204ENST00000444061 FLGP20930 4061 aaPredicted RBP5.33□□□□□ -1.56
SMARCA4-204ENST00000444061 LCE2DQ5TA82 110 aaPredicted RBP5.27□□□□□ -1.57
SMARCA4-204ENST00000444061 SPRR2EP22531 72 aa5.26□□□□□ -1.57
SMARCA4-204ENST00000444061 SPRR2BP35325 72 aa5.26□□□□□ -1.57
SMARCA4-204ENST00000444061 SPRR2AP35326 72 aa5.26□□□□□ -1.57
SMARCA4-204ENST00000444061 FSIP2Q5CZC0 6907 aa5.21□□□□□ -1.58
SMARCA4-204ENST00000444061 KRTAP4-8A0A0G2JLE6 195 aa5.17□□□□□ -1.58
SMARCA4-204ENST00000444061 KRTAP4-8Q9BYQ9 185 aa5.17□□□□□ -1.58
SMARCA4-204ENST00000444061 KRTAP19-6Q3LI70 58 aa5.17□□□□□ -1.58
SMARCA4-204ENST00000444061 KRTAP19-4Q3LI73 84 aa5.15□□□□□ -1.58
SMARCA4-204ENST00000444061 KRTAP9-6A0A140TA67 174 aa5.13□□□□□ -1.59
SMARCA4-204ENST00000444061 LCE3CQ5T5A8 94 aa5.09□□□□□ -1.59
SMARCA4-204ENST00000444061 SPRR2DP22532 72 aa5.09□□□□□ -1.6
SMARCA4-204ENST00000444061 MUC2Q02817 5179 aa5.03□□□□□ -1.6
SMARCA4-204ENST00000444061 SPRR5A0A1B0GTR4 108 aa5.02□□□□□ -1.61
SMARCA4-204ENST00000444061 MT1GP13640 62 aa5□□□□□ -1.61
SMARCA4-204ENST00000444061 KRTAP19-3Q7Z4W3 81 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms