RNA–Protein interactions for RNA: ENST00000444061.7

SMARCA4-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SMARCA4, Length 4,938 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-204ENST00000444061 NISCHQ9Y2I1 1504 aa27.25■■□□□ 1.95
SMARCA4-204ENST00000444061 DCAF8L2P0C7V8 631 aa26.25■■□□□ 1.79
SMARCA4-204ENST00000444061 SHROOM4Q9ULL8 1493 aa24.46■■□□□ 1.51
SMARCA4-204ENST00000444061 SUPT5HO00267 1087 aaKnown RBP24.24■■□□□ 1.47
SMARCA4-204ENST00000444061 ABCC9O60706 1549 aa23.71■■□□□ 1.39
SMARCA4-204ENST00000444061 PABPN1Q86U42 306 aaKnown RBP eCLIP23.06■■□□□ 1.28
SMARCA4-204ENST00000444061 CCDC180Q9P1Z9 1646 aa22.98■■□□□ 1.27
SMARCA4-204ENST00000444061 EHMT2Q96KQ7 1210 aa22.94■■□□□ 1.26
SMARCA4-204ENST00000444061 FAM9AQ8IZU1 332 aaPredicted RBP22.71■■□□□ 1.23
SMARCA4-204ENST00000444061 TRIM41Q8WV44 630 aa22.64■■□□□ 1.21
SMARCA4-204ENST00000444061 ZCCHC6Q5VYS8 1495 aaKnown RBP22.57■■□□□ 1.2
SMARCA4-204ENST00000444061 APLP2Q06481 763 aa22.46■■□□□ 1.19
SMARCA4-204ENST00000444061 RB1CC1Q8TDY2 1594 aa22.37■■□□□ 1.17
SMARCA4-204ENST00000444061 SCRIBQ14160 1630 aa22.36■■□□□ 1.17
SMARCA4-204ENST00000444061 RANGAP1P46060 587 aaPredicted RBP22.32■■□□□ 1.16
SMARCA4-204ENST00000444061 UBTFP17480 764 aaKnown RBP22.22■■□□□ 1.15
SMARCA4-204ENST00000444061 NACADO15069 1562 aa22.21■■□□□ 1.15
SMARCA4-204ENST00000444061 ATP1B4Q9UN42 357 aaPredicted RBP22.11■■□□□ 1.13
SMARCA4-204ENST00000444061 TTBK1Q5TCY1 1321 aaPredicted RBP21.97■■□□□ 1.11
SMARCA4-204ENST00000444061 DCAF1Q9Y4B6 1507 aa21.85■■□□□ 1.09
SMARCA4-204ENST00000444061 CHIC1Q5VXU3 224 aa21.83■■□□□ 1.09
SMARCA4-204ENST00000444061 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.67■■□□□ 1.06
SMARCA4-204ENST00000444061 HNRNPUL2Q1KMD3 747 aaKnown RBP21.67■■□□□ 1.06
SMARCA4-204ENST00000444061 FBLN2P98095 1184 aa21.61■■□□□ 1.05
SMARCA4-204ENST00000444061 MYO15BQ96JP2 1530 aa21.5■■□□□ 1.03
SMARCA4-204ENST00000444061 LOC105371045A0A1W2PR82 267 aa21.47■■□□□ 1.03
SMARCA4-204ENST00000444061 BAZ1BQ9UIG0 1483 aaKnown RBP21.44■■□□□ 1.02
SMARCA4-204ENST00000444061 RSF1Q96T23 1441 aaPredicted RBP21.44■■□□□ 1.02
SMARCA4-204ENST00000444061 PCGF6Q9BYE7 350 aa21.39■■□□□ 1.02
SMARCA4-204ENST00000444061 MYT1LQ9UL68 1186 aa21.38■■□□□ 1.01
SMARCA4-204ENST00000444061 BAZ1AQ9NRL2 1556 aaPredicted RBP21.37■■□□□ 1.01
SMARCA4-204ENST00000444061 PPARGC1BQ86YN6 1023 aaKnown RBP21.36■■□□□ 1.01
SMARCA4-204ENST00000444061 CECR2Q9BXF3 1484 aa21.34■■□□□ 1.01
SMARCA4-204ENST00000444061 CSRNP3Q8WYN3 585 aa21.25■□□□□ 0.99
SMARCA4-204ENST00000444061 ITGAEP38570 1179 aa21.16■□□□□ 0.98
SMARCA4-204ENST00000444061 ERCC6Q03468 1493 aa21.14■□□□□ 0.97
SMARCA4-204ENST00000444061 CCER1Q8TC90 406 aaPredicted RBP21.12■□□□□ 0.97
SMARCA4-204ENST00000444061 P3H3Q8IVL6 736 aa21.07■□□□□ 0.96
SMARCA4-204ENST00000444061 SMARCA2P51531 1590 aa21.06■□□□□ 0.96
SMARCA4-204ENST00000444061 MROH2BQ7Z745 1585 aa21.05■□□□□ 0.96
SMARCA4-204ENST00000444061 CHMP7Q8WUX9 453 aaPredicted RBP21.03■□□□□ 0.96
SMARCA4-204ENST00000444061 ARID3CA6NKF2 412 aa20.95■□□□□ 0.94
SMARCA4-204ENST00000444061 TRIM26Q12899 539 aaPredicted RBP20.94■□□□□ 0.94
SMARCA4-204ENST00000444061 WRNQ14191 1432 aaPredicted RBP eCLIP20.93■□□□□ 0.945e-6■■□□□ 12.5
SMARCA4-204ENST00000444061 FAM50AQ14320 339 aaKnown RBP20.89■□□□□ 0.94
SMARCA4-204ENST00000444061 NPM1P06748 294 aaKnown RBP eCLIP20.88■□□□□ 0.93
SMARCA4-204ENST00000444061 PDS5BQ9NTI5 1447 aa20.86■□□□□ 0.93
SMARCA4-204ENST00000444061 ATAD2BQ9ULI0 1458 aa20.85■□□□□ 0.93
SMARCA4-204ENST00000444061 ZEB1P37275 1124 aaPredicted RBP20.84■□□□□ 0.93
SMARCA4-204ENST00000444061 CDK11AQ9UQ88 783 aaPredicted RBP20.84■□□□□ 0.93
SMARCA4-204ENST00000444061 CCDC88BA6NC98 1476 aa20.78■□□□□ 0.92
SMARCA4-204ENST00000444061 PELP1Q8IZL8 1130 aaKnown RBP20.76■□□□□ 0.91
SMARCA4-204ENST00000444061 SMARCA4P51532 1647 aa20.75■□□□□ 0.91
SMARCA4-204ENST00000444061 CADPSQ9ULU8 1353 aa20.73■□□□□ 0.91
SMARCA4-204ENST00000444061 KIF27Q86VH2 1401 aa20.73■□□□□ 0.91
SMARCA4-204ENST00000444061 WIZO95785 1651 aa20.7■□□□□ 0.9
SMARCA4-204ENST00000444061 TOP2AP11388 1531 aaKnown RBP20.7■□□□□ 0.9
SMARCA4-204ENST00000444061 EEA1Q15075 1411 aa20.66■□□□□ 0.9
SMARCA4-204ENST00000444061 ZNF777Q9ULD5 760 aaPredicted RBP20.65■□□□□ 0.9
SMARCA4-204ENST00000444061 TRIM52Q96A61 297 aa20.64■□□□□ 0.89
SMARCA4-204ENST00000444061 EIF4G1Q04637 1599 aaKnown RBP20.63■□□□□ 0.89
SMARCA4-204ENST00000444061 CUX2O14529 1486 aa20.55■□□□□ 0.88
SMARCA4-204ENST00000444061 NCAPD3P42695 1498 aa20.54■□□□□ 0.88
SMARCA4-204ENST00000444061 MYT1Q01538 1121 aa20.52■□□□□ 0.87
SMARCA4-204ENST00000444061 SOGA1O94964 1423 aa20.51■□□□□ 0.87
SMARCA4-204ENST00000444061 CEP164Q9UPV0 1460 aa20.5■□□□□ 0.87
SMARCA4-204ENST00000444061 GOLGA3Q08378 1498 aa20.47■□□□□ 0.87
SMARCA4-204ENST00000444061 CLIP1P30622 1438 aa20.46■□□□□ 0.87
SMARCA4-204ENST00000444061 TDRD9Q8NDG6 1382 aaKnown RBP20.46■□□□□ 0.87
SMARCA4-204ENST00000444061 CARMIL1Q5VZK9 1371 aa20.44■□□□□ 0.86
SMARCA4-204ENST00000444061 FANCD2Q9BXW9 1451 aa20.42■□□□□ 0.86
SMARCA4-204ENST00000444061 ESF1Q9H501 851 aaKnown RBP20.41■□□□□ 0.86
SMARCA4-204ENST00000444061 MTUS2Q5JR59 1369 aa20.4■□□□□ 0.86
SMARCA4-204ENST00000444061 POLR3GLQ9BT43 218 aa20.39■□□□□ 0.86
SMARCA4-204ENST00000444061 KCNH8Q96L42 1107 aa20.39■□□□□ 0.85
SMARCA4-204ENST00000444061 PLEKHD1A6NEE1 506 aa20.39■□□□□ 0.85
SMARCA4-204ENST00000444061 ABCC8Q09428 1581 aa20.38■□□□□ 0.85
SMARCA4-204ENST00000444061 CC2D2AQ9P2K1 1620 aa20.37■□□□□ 0.85
SMARCA4-204ENST00000444061 BICRAQ9NZM4 1560 aa20.32■□□□□ 0.84
SMARCA4-204ENST00000444061 DNAJC5BQ9UF47 199 aa20.28■□□□□ 0.84
SMARCA4-204ENST00000444061 NEUROD1Q13562 356 aa20.28■□□□□ 0.84
SMARCA4-204ENST00000444061 TSPY4P0CV99 314 aa20.27■□□□□ 0.84
SMARCA4-204ENST00000444061 TSPY10P0CW01 314 aa20.27■□□□□ 0.84
SMARCA4-204ENST00000444061 TNIKQ9UKE5 1360 aa20.25■□□□□ 0.83
SMARCA4-204ENST00000444061 CEP162Q5TB80 1403 aa20.25■□□□□ 0.83
SMARCA4-204ENST00000444061 CENPBP07199 599 aaPredicted RBP20.23■□□□□ 0.83
SMARCA4-204ENST00000444061 ZNF326Q5BKZ1 582 aaKnown RBP20.2■□□□□ 0.82
SMARCA4-204ENST00000444061 BCANQ96GW7 911 aa20.2■□□□□ 0.82
SMARCA4-204ENST00000444061 SLC4A1APQ9BWU0 796 aaKnown RBP20.19■□□□□ 0.82
SMARCA4-204ENST00000444061 CHIC2Q9UKJ5 165 aa20.19■□□□□ 0.82
SMARCA4-204ENST00000444061 PLPPR3Q6T4P5 718 aa20.19■□□□□ 0.82
SMARCA4-204ENST00000444061 CARMIL2Q6F5E8 1435 aa20.17■□□□□ 0.82
SMARCA4-204ENST00000444061 HMGXB3Q12766 1538 aa20.17■□□□□ 0.82
SMARCA4-204ENST00000444061 TRHP20396 242 aaPredicted RBP20.14■□□□□ 0.82
SMARCA4-204ENST00000444061 STAG3Q9UJ98 1225 aa20.11■□□□□ 0.81
SMARCA4-204ENST00000444061 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.11■□□□□ 0.812e-8■■■□□ 17.8
SMARCA4-204ENST00000444061 NESP48681 1621 aa20.1■□□□□ 0.81
SMARCA4-204ENST00000444061 CFDP1Q9UEE9 299 aaPredicted RBP20.1■□□□□ 0.81
SMARCA4-204ENST00000444061 CHGAP10645 457 aaKnown RBP20.08■□□□□ 0.8
SMARCA4-204ENST00000444061 CFTRP13569 1480 aa20.08■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms