RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 KRTAP3-3Q9BYR6 98 aa4.58□□□□□ -1.68
COPB1-202ENST00000439561 XP32Q5T750 250 aa4.57□□□□□ -1.68
COPB1-202ENST00000439561 Q5VSD8 79 aa4.56□□□□□ -1.68
COPB1-202ENST00000439561 KRTAP3-2Q9BYR7 98 aa4.56□□□□□ -1.68
COPB1-202ENST00000439561 M0QZ58 72 aa4.55□□□□□ -1.68
COPB1-202ENST00000439561 HYDINQ4G0P3 5121 aa4.55□□□□□ -1.68
COPB1-202ENST00000439561 R4GN34 69 aa4.54□□□□□ -1.68
COPB1-202ENST00000439561 KRTAP12-1P59990 96 aa4.51□□□□□ -1.69
COPB1-202ENST00000439561 PKHD1P08F94 4074 aa4.5□□□□□ -1.69
COPB1-202ENST00000439561 FAT2Q9NYQ8 4349 aa4.49□□□□□ -1.69
COPB1-202ENST00000439561 KRTAP10-4P60372 401 aaPredicted RBP4.48□□□□□ -1.69
COPB1-202ENST00000439561 MYCBP2O75592 4640 aa4.48□□□□□ -1.69
COPB1-202ENST00000439561 A0A1B0GVY2 172 aa4.46□□□□□ -1.7
COPB1-202ENST00000439561 KRTAP15-1Q3LI76 137 aa4.46□□□□□ -1.7
COPB1-202ENST00000439561 DYNC1H1Q14204 4646 aaKnown RBP4.46□□□□□ -1.7
COPB1-202ENST00000439561 PKD1P98161 4303 aa4.44□□□□□ -1.7
COPB1-202ENST00000439561 SACSQ9NZJ4 4579 aa4.44□□□□□ -1.7
COPB1-202ENST00000439561 CAMK2N1Q7Z7J9 78 aa4.42□□□□□ -1.7
COPB1-202ENST00000439561 LUZP6Q538Z0 58 aa4.4□□□□□ -1.7
COPB1-202ENST00000439561 LRP1Q07954 4544 aaKnown RBP4.4□□□□□ -1.71
COPB1-202ENST00000439561 PLAC4Q8WY50 150 aa4.37□□□□□ -1.71
COPB1-202ENST00000439561 APOBP04114 4563 aaKnown RBP4.33□□□□□ -1.72
COPB1-202ENST00000439561 FAT3Q8TDW7 4589 aa4.29□□□□□ -1.72
COPB1-202ENST00000439561 HSPG2P98160 4391 aa4.28□□□□□ -1.72
COPB1-202ENST00000439561 SEC61BP60468 96 aaKnown RBP4.26□□□□□ -1.73
COPB1-202ENST00000439561 A0A0A0MQY5 61 aa4.26□□□□□ -1.73
COPB1-202ENST00000439561 J3QL48 77 aa4.25□□□□□ -1.73
COPB1-202ENST00000439561 KMT2CQ8NEZ4 4911 aaKnown RBP4.25□□□□□ -1.73
COPB1-202ENST00000439561 MT1HL1P0DM35 61 aa4.24□□□□□ -1.73
COPB1-202ENST00000439561 LORP23490 312 aaPredicted RBP4.24□□□□□ -1.73
COPB1-202ENST00000439561 LRP2P98164 4655 aa4.21□□□□□ -1.74
COPB1-202ENST00000439561 PKHD1L1Q86WI1 4243 aa4.2□□□□□ -1.74
COPB1-202ENST00000439561 KIAA1109Q2LD37 5005 aa4.16□□□□□ -1.74
COPB1-202ENST00000439561 LPAP08519 4548 aa4.16□□□□□ -1.74
COPB1-202ENST00000439561 KRTAP17-1Q9BYP8 105 aa4.16□□□□□ -1.74
COPB1-202ENST00000439561 PP632Q6XCG6 107 aa4.15□□□□□ -1.74
COPB1-202ENST00000439561 RYR1P21817 5038 aa4.14□□□□□ -1.75
COPB1-202ENST00000439561 TNP1P09430 55 aa4.13□□□□□ -1.75
COPB1-202ENST00000439561 TNXBP22105 4242 aa4.11□□□□□ -1.75
COPB1-202ENST00000439561 RYR2Q92736 4967 aa4.1□□□□□ -1.75
COPB1-202ENST00000439561 RYR3Q15413 4870 aa4.07□□□□□ -1.76
COPB1-202ENST00000439561 KRTAP4-5Q9BYR2 181 aa4.06□□□□□ -1.76
COPB1-202ENST00000439561 M0R2T5 61 aa4.05□□□□□ -1.76
COPB1-202ENST00000439561 KRTAP4-1Q9BYQ7 146 aa4.04□□□□□ -1.76
COPB1-202ENST00000439561 BIRC6Q9NR09 4857 aa4.03□□□□□ -1.76
COPB1-202ENST00000439561 ABCA13Q86UQ4 5058 aa3.95□□□□□ -1.78
COPB1-202ENST00000439561 EPPK1P58107 5090 aaKnown RBP3.94□□□□□ -1.78
COPB1-202ENST00000439561 MUC2Q02817 5179 aa3.89□□□□□ -1.79
COPB1-202ENST00000439561 KRTAP10-10P60014 251 aa3.82□□□□□ -1.8
COPB1-202ENST00000439561 LCE3AQ5TA76 89 aa3.8□□□□□ -1.8
COPB1-202ENST00000439561 HERC2O95714 4834 aa3.79□□□□□ -1.8
COPB1-202ENST00000439561 KRTAP19-2Q3LHN2 52 aa3.76□□□□□ -1.81
COPB1-202ENST00000439561 KRTAP23-1A1A580 65 aa3.75□□□□□ -1.81
COPB1-202ENST00000439561 MUC17Q685J3 4493 aa3.74□□□□□ -1.81
COPB1-202ENST00000439561 PCLOQ9Y6V0 5065 aa3.73□□□□□ -1.81
COPB1-202ENST00000439561 SPRR5A0A1B0GTR4 108 aa3.7□□□□□ -1.82
COPB1-202ENST00000439561 FAT4Q6V0I7 4981 aa3.68□□□□□ -1.82
COPB1-202ENST00000439561 HERC1Q15751 4861 aa3.67□□□□□ -1.82
COPB1-202ENST00000439561 PRO2289Q9P1D8 64 aa3.66□□□□□ -1.82
COPB1-202ENST00000439561 KRTAP19-1Q8IUB9 90 aa3.66□□□□□ -1.82
COPB1-202ENST00000439561 SPRR2GQ9BYE4 73 aa3.65□□□□□ -1.83
COPB1-202ENST00000439561 RNF213Q63HN8 5207 aa3.64□□□□□ -1.83
COPB1-202ENST00000439561 FLGP20930 4061 aaPredicted RBP3.64□□□□□ -1.83
COPB1-202ENST00000439561 KRTAP12-3P60328 96 aa3.63□□□□□ -1.83
COPB1-202ENST00000439561 KRTAP10-12P60413 245 aa3.62□□□□□ -1.83
COPB1-202ENST00000439561 INE1O15225 51 aa3.59□□□□□ -1.83
COPB1-202ENST00000439561 MT1FP04733 61 aa3.59□□□□□ -1.83
COPB1-202ENST00000439561 MT2AP02795 61 aa3.57□□□□□ -1.84
COPB1-202ENST00000439561 MT1HP80294 61 aa3.56□□□□□ -1.84
COPB1-202ENST00000439561 LCE2CQ5TA81 110 aa3.55□□□□□ -1.84
COPB1-202ENST00000439561 KRTAP8-1Q8IUC2 63 aa3.55□□□□□ -1.84
COPB1-202ENST00000439561 UBR4Q5T4S7 5183 aa3.5□□□□□ -1.85
COPB1-202ENST00000439561 HMCN2Q8NDA2 5059 aa3.49□□□□□ -1.85
COPB1-202ENST00000439561 KRTAP10-7P60409 375 aaPredicted RBP3.48□□□□□ -1.85
COPB1-202ENST00000439561 KRTAP10-5P60370 271 aa3.47□□□□□ -1.85
COPB1-202ENST00000439561 MT1XP80297 61 aa3.47□□□□□ -1.85
COPB1-202ENST00000439561 MT1BP07438 61 aa3.44□□□□□ -1.86
COPB1-202ENST00000439561 KRTAP9-8Q9BYQ0 159 aa3.44□□□□□ -1.86
COPB1-202ENST00000439561 KRTAP19-8Q3LI54 63 aa3.41□□□□□ -1.86
COPB1-202ENST00000439561 KRTAP19-5Q3LI72 72 aa3.39□□□□□ -1.87
COPB1-202ENST00000439561 LCE3CQ5T5A8 94 aa3.34□□□□□ -1.87
COPB1-202ENST00000439561 KMT2DO14686 5537 aa3.3□□□□□ -1.88
COPB1-202ENST00000439561 KRTAP4-8A0A0G2JLE6 195 aa3.29□□□□□ -1.88
COPB1-202ENST00000439561 KRTAP4-8Q9BYQ9 185 aa3.29□□□□□ -1.88
COPB1-202ENST00000439561 USH2AO75445 5202 aa3.29□□□□□ -1.88
COPB1-202ENST00000439561 KRTAP9-3Q9BYQ3 159 aa3.27□□□□□ -1.89
COPB1-202ENST00000439561 KRTAP9-6A0A140TA67 174 aa3.27□□□□□ -1.89
COPB1-202ENST00000439561 KRTAP9-2Q9BYQ4 174 aa3.26□□□□□ -1.89
COPB1-202ENST00000439561 KRTAP4-7Q9BYR0 210 aa3.25□□□□□ -1.89
COPB1-202ENST00000439561 CRCT1Q9UGL9 99 aa3.22□□□□□ -1.89
COPB1-202ENST00000439561 FSIP2Q5CZC0 6907 aa3.2□□□□□ -1.9
COPB1-202ENST00000439561 KRTAP9-6A8MVA2 160 aa3.18□□□□□ -1.9
COPB1-202ENST00000439561 LCE2BO14633 110 aa3.18□□□□□ -1.9
COPB1-202ENST00000439561 LCE2DQ5TA82 110 aaPredicted RBP3.15□□□□□ -1.9
COPB1-202ENST00000439561 KRTAP19-7Q3SYF9 63 aa3.06□□□□□ -1.92
COPB1-202ENST00000439561 KRTAP2-3P0C7H8 128 aa3.04□□□□□ -1.92
COPB1-202ENST00000439561 KRTAP2-4Q9BYR9 128 aa3.04□□□□□ -1.92
COPB1-202ENST00000439561 KRTAP2-1Q9BYU5 128 aa3.04□□□□□ -1.92
COPB1-202ENST00000439561 LCE2AQ5TA79 106 aaPredicted RBP3.03□□□□□ -1.92
COPB1-202ENST00000439561 MT1LQ93083 61 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 1264.4 ms