RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, humanhuman

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-216ENST00000437340 LPAP08519 4548 aa13.31□□□□□ -0.28
CPNE1-216ENST00000437340 HERC1Q15751 4861 aa13.28□□□□□ -0.28
CPNE1-216ENST00000437340 CDC42SE1Q9NRR8 79 aa13.2□□□□□ -0.3
CPNE1-216ENST00000437340 LCA10Q71F78 164 aa13.2□□□□□ -0.3
CPNE1-216ENST00000437340 LRP2P98164 4655 aa13.16□□□□□ -0.3
CPNE1-216ENST00000437340 A8MU10 97 aa13.14□□□□□ -0.31
CPNE1-216ENST00000437340 SEC61GP60059 68 aa13.14□□□□□ -0.31
CPNE1-216ENST00000437340 HMCN2Q8NDA2 5059 aa13.09□□□□□ -0.31
CPNE1-216ENST00000437340 UQCR11O14957 56 aa13.04□□□□□ -0.32
CPNE1-216ENST00000437340 SEC61BP60468 96 aaKnown RBP12.97□□□□□ -0.33
CPNE1-216ENST00000437340 SPATA8Q6RVD6 105 aa12.97□□□□□ -0.33
CPNE1-216ENST00000437340 S4R3F8 94 aa12.97□□□□□ -0.33
CPNE1-216ENST00000437340 H1FX-AS1Q4G0G2 97 aa12.96□□□□□ -0.34
CPNE1-216ENST00000437340 KRTAP3-3Q9BYR6 98 aa12.95□□□□□ -0.34
CPNE1-216ENST00000437340 RBM12B-AS1Q9P1G2 102 aa12.94□□□□□ -0.34
CPNE1-216ENST00000437340 MIR22HGQ0VDD5 57 aa12.92□□□□□ -0.34
CPNE1-216ENST00000437340 MUC17Q685J3 4493 aa12.87□□□□□ -0.35
CPNE1-216ENST00000437340 PMAIP1Q13794 54 aa12.84□□□□□ -0.35
CPNE1-216ENST00000437340 A0A1B0GU33 70 aa12.79□□□□□ -0.36
CPNE1-216ENST00000437340 A6NN06 94 aa12.71□□□□□ -0.38
CPNE1-216ENST00000437340 KRTAP4-1Q9BYQ7 146 aa12.7□□□□□ -0.38
CPNE1-216ENST00000437340 H0YAA0 97 aa12.67□□□□□ -0.38
CPNE1-216ENST00000437340 KRTAP10-6P60371 365 aaPredicted RBP12.65□□□□□ -0.38
CPNE1-216ENST00000437340 CSAG1Q6PB30 78 aa12.63□□□□□ -0.39
CPNE1-216ENST00000437340 KRTAP3-2Q9BYR7 98 aa12.61□□□□□ -0.39
CPNE1-216ENST00000437340 UBR4Q5T4S7 5183 aa12.52□□□□□ -0.4
CPNE1-216ENST00000437340 MUC2Q02817 5179 aa12.48□□□□□ -0.41
CPNE1-216ENST00000437340 KTN1-AS1Q86SY8 53 aa12.46□□□□□ -0.41
CPNE1-216ENST00000437340 ADM2Q7Z4H4 148 aa12.46□□□□□ -0.42
CPNE1-216ENST00000437340 P0C880 135 aa12.44□□□□□ -0.42
CPNE1-216ENST00000437340 KRTAP19-2Q3LHN2 52 aa12.41□□□□□ -0.42
CPNE1-216ENST00000437340 RNF213Q63HN8 5207 aa12.41□□□□□ -0.42
CPNE1-216ENST00000437340 KRTAP13-4Q3LI77 160 aa12.35□□□□□ -0.43
CPNE1-216ENST00000437340 K7ERS5 55 aa12.26□□□□□ -0.45
CPNE1-216ENST00000437340 M0QZ58 72 aa12.21□□□□□ -0.45
CPNE1-216ENST00000437340 A0A0D9SG42 100 aa12.16□□□□□ -0.46
CPNE1-216ENST00000437340 FLGP20930 4061 aaPredicted RBP12.12□□□□□ -0.47
CPNE1-216ENST00000437340 LCE2CQ5TA81 110 aa12.09□□□□□ -0.47
CPNE1-216ENST00000437340 R4GN34 69 aa11.98□□□□□ -0.49
CPNE1-216ENST00000437340 FAT4Q6V0I7 4981 aa11.98□□□□□ -0.49
CPNE1-216ENST00000437340 PRAC1Q96KF2 57 aa11.95□□□□□ -0.5
CPNE1-216ENST00000437340 KRTAP12-1P59990 96 aa11.92□□□□□ -0.5
CPNE1-216ENST00000437340 KRTAP12-2P59991 146 aa11.91□□□□□ -0.5
CPNE1-216ENST00000437340 LORP23490 312 aaPredicted RBP11.86□□□□□ -0.51
CPNE1-216ENST00000437340 MT1HP80294 61 aa11.84□□□□□ -0.51
CPNE1-216ENST00000437340 SPINT4Q6UDR6 99 aa11.84□□□□□ -0.51
CPNE1-216ENST00000437340 ROMO1P60602 79 aa11.83□□□□□ -0.52
CPNE1-216ENST00000437340 LINC01554Q52M75 96 aa11.76□□□□□ -0.53
CPNE1-216ENST00000437340 CRIPTQ9P021 101 aa11.72□□□□□ -0.53
CPNE1-216ENST00000437340 M0R2T5 61 aa11.69□□□□□ -0.54
CPNE1-216ENST00000437340 KRTAP25-1Q3LHN0 102 aa11.59□□□□□ -0.55
CPNE1-216ENST00000437340 LCE2AQ5TA79 106 aaPredicted RBP11.5□□□□□ -0.57
CPNE1-216ENST00000437340 KRTAP9-8Q9BYQ0 159 aa11.39□□□□□ -0.59
CPNE1-216ENST00000437340 MT2AP02795 61 aa11.34□□□□□ -0.59
CPNE1-216ENST00000437340 SPRR2GQ9BYE4 73 aa11.33□□□□□ -0.59
CPNE1-216ENST00000437340 MT1FP04733 61 aa11.28□□□□□ -0.6
CPNE1-216ENST00000437340 CAMK2N1Q7Z7J9 78 aa11.28□□□□□ -0.6
CPNE1-216ENST00000437340 C10orf95Q9H7T3 257 aa11.26□□□□□ -0.61
CPNE1-216ENST00000437340 KRTAP19-1Q8IUB9 90 aa11.24□□□□□ -0.61
CPNE1-216ENST00000437340 KRTAP10-10P60014 251 aa11.22□□□□□ -0.61
CPNE1-216ENST00000437340 PLAC4Q8WY50 150 aa11.07□□□□□ -0.64
CPNE1-216ENST00000437340 KRTAP9-3Q9BYQ3 159 aa10.98□□□□□ -0.65
CPNE1-216ENST00000437340 KRTAP19-8Q3LI54 63 aa10.96□□□□□ -0.65
CPNE1-216ENST00000437340 TNP1P09430 55 aa10.82□□□□□ -0.68
CPNE1-216ENST00000437340 PP632Q6XCG6 107 aa10.81□□□□□ -0.68
CPNE1-216ENST00000437340 MT1BP07438 61 aa10.75□□□□□ -0.69
CPNE1-216ENST00000437340 LCE2BO14633 110 aa10.72□□□□□ -0.69
CPNE1-216ENST00000437340 KRTAP23-1A1A580 65 aa10.69□□□□□ -0.7
CPNE1-216ENST00000437340 KRTAP10-5P60370 271 aa10.52□□□□□ -0.72
CPNE1-216ENST00000437340 MT1XP80297 61 aa10.52□□□□□ -0.72
CPNE1-216ENST00000437340 USH2AO75445 5202 aa10.51□□□□□ -0.73
CPNE1-216ENST00000437340 LCE2DQ5TA82 110 aaPredicted RBP10.47□□□□□ -0.73
CPNE1-216ENST00000437340 KRTAP15-1Q3LI76 137 aa10.39□□□□□ -0.75
CPNE1-216ENST00000437340 PRO2289Q9P1D8 64 aa10.37□□□□□ -0.75
CPNE1-216ENST00000437340 LCE3AQ5TA76 89 aa10.26□□□□□ -0.77
CPNE1-216ENST00000437340 SSPOA2VEC9 5147 aa10.2□□□□□ -0.78
CPNE1-216ENST00000437340 FSIP2Q5CZC0 6907 aa10.19□□□□□ -0.78
CPNE1-216ENST00000437340 KRTAP9-2Q9BYQ4 174 aa10.19□□□□□ -0.78
CPNE1-216ENST00000437340 KRTAP10-12P60413 245 aa10.14□□□□□ -0.79
CPNE1-216ENST00000437340 KRTAP10-7P60409 375 aaPredicted RBP10.11□□□□□ -0.79
CPNE1-216ENST00000437340 KRTAP8-1Q8IUC2 63 aa10.11□□□□□ -0.79
CPNE1-216ENST00000437340 KRTAP19-6Q3LI70 58 aa10.06□□□□□ -0.8
CPNE1-216ENST00000437340 KRTAP12-3P60328 96 aa9.85□□□□□ -0.83
CPNE1-216ENST00000437340 CRCT1Q9UGL9 99 aa9.78□□□□□ -0.84
CPNE1-216ENST00000437340 FCGBPQ9Y6R7 5405 aaPredicted RBP9.78□□□□□ -0.84
CPNE1-216ENST00000437340 SPRR5A0A1B0GTR4 108 aa9.78□□□□□ -0.84
CPNE1-216ENST00000437340 NDUFAF8A1L188 74 aa9.78□□□□□ -0.84
CPNE1-216ENST00000437340 LUZP6Q538Z0 58 aa9.68□□□□□ -0.86
CPNE1-216ENST00000437340 KRTAP19-5Q3LI72 72 aa9.62□□□□□ -0.87
CPNE1-216ENST00000437340 KRTAP4-8A0A0G2JLE6 195 aa9.58□□□□□ -0.88
CPNE1-216ENST00000437340 KRTAP4-8Q9BYQ9 185 aa9.58□□□□□ -0.88
CPNE1-216ENST00000437340 KMT2DO14686 5537 aa9.57□□□□□ -0.88
CPNE1-216ENST00000437340 KRTAP9-6A0A140TA67 174 aa9.44□□□□□ -0.9
CPNE1-216ENST00000437340 KRTAP19-7Q3SYF9 63 aa9.38□□□□□ -0.91
CPNE1-216ENST00000437340 H3BS24 57 aa9.36□□□□□ -0.91
CPNE1-216ENST00000437340 MACF1Q9UPN3 7388 aaKnown RBP9.36□□□□□ -0.91
CPNE1-216ENST00000437340 LCE3CQ5T5A8 94 aa9.24□□□□□ -0.93
CPNE1-216ENST00000437340 KRTAP19-4Q3LI73 84 aa9.22□□□□□ -0.93
CPNE1-216ENST00000437340 MT1EP04732 61 aa9.19□□□□□ -0.94
CPNE1-216ENST00000437340 SYNE2Q8WXH0 6885 aaKnown RBP9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms