RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 FRAS1Q86XX4 4008 aa5.49□□□□□ -1.53
CCDC88A-207ENST00000436346 KRTAP10-6P60371 365 aaPredicted RBP5.45□□□□□ -1.54
CCDC88A-207ENST00000436346 MT1HL1P0DM35 61 aa5.42□□□□□ -1.54
CCDC88A-207ENST00000436346 KRTAP4-5Q9BYR2 181 aa5.4□□□□□ -1.54
CCDC88A-207ENST00000436346 HUWE1Q7Z6Z7 4374 aaKnown RBP5.39□□□□□ -1.55
CCDC88A-207ENST00000436346 DNAH1Q9P2D7 4330 aa5.37□□□□□ -1.55
CCDC88A-207ENST00000436346 DNAH2Q9P225 4427 aa5.33□□□□□ -1.56
CCDC88A-207ENST00000436346 PRKDCP78527 4128 aaKnown RBP5.31□□□□□ -1.56
CCDC88A-207ENST00000436346 KRTAP3-3Q9BYR6 98 aa5.27□□□□□ -1.57
CCDC88A-207ENST00000436346 KRTAP12-3P60328 96 aa5.26□□□□□ -1.57
CCDC88A-207ENST00000436346 INE1O15225 51 aa5.24□□□□□ -1.57
CCDC88A-207ENST00000436346 KRTAP3-2Q9BYR7 98 aa5.22□□□□□ -1.57
CCDC88A-207ENST00000436346 DNAH6Q9C0G6 4158 aa5.2□□□□□ -1.58
CCDC88A-207ENST00000436346 KRTAP10-4P60372 401 aaPredicted RBP5.19□□□□□ -1.58
CCDC88A-207ENST00000436346 KRTAP8-1Q8IUC2 63 aa5.16□□□□□ -1.58
CCDC88A-207ENST00000436346 LCE3AQ5TA76 89 aa5.16□□□□□ -1.58
CCDC88A-207ENST00000436346 LORP23490 312 aaPredicted RBP5.09□□□□□ -1.59
CCDC88A-207ENST00000436346 KRTAP10-5P60370 271 aa5.04□□□□□ -1.6
CCDC88A-207ENST00000436346 KRTAP23-1A1A580 65 aa5.03□□□□□ -1.6
CCDC88A-207ENST00000436346 PKHD1P08F94 4074 aa4.98□□□□□ -1.61
CCDC88A-207ENST00000436346 FAT2Q9NYQ8 4349 aa4.96□□□□□ -1.62
CCDC88A-207ENST00000436346 FLGP20930 4061 aaPredicted RBP4.92□□□□□ -1.62
CCDC88A-207ENST00000436346 DNAH10Q8IVF4 4471 aa4.89□□□□□ -1.63
CCDC88A-207ENST00000436346 DNAH9Q9NYC9 4486 aa4.89□□□□□ -1.63
CCDC88A-207ENST00000436346 STARD9Q9P2P6 4700 aa4.86□□□□□ -1.63
CCDC88A-207ENST00000436346 MT1HP80294 61 aa4.85□□□□□ -1.63
CCDC88A-207ENST00000436346 SPRR2FQ96RM1 72 aa4.82□□□□□ -1.64
CCDC88A-207ENST00000436346 KRTAP10-7P60409 375 aaPredicted RBP4.8□□□□□ -1.64
CCDC88A-207ENST00000436346 KRTAP4-1Q9BYQ7 146 aa4.78□□□□□ -1.64
CCDC88A-207ENST00000436346 DYNC2H1Q8NCM8 4307 aaKnown RBP4.76□□□□□ -1.65
CCDC88A-207ENST00000436346 VPS13DQ5THJ4 4388 aa4.75□□□□□ -1.65
CCDC88A-207ENST00000436346 PKHD1L1Q86WI1 4243 aa4.71□□□□□ -1.66
CCDC88A-207ENST00000436346 MT2AP02795 61 aa4.69□□□□□ -1.66
CCDC88A-207ENST00000436346 SPRR2GQ9BYE4 73 aa4.69□□□□□ -1.66
CCDC88A-207ENST00000436346 DNAH17Q9UFH2 4485 aa4.69□□□□□ -1.66
CCDC88A-207ENST00000436346 KRTAP19-5Q3LI72 72 aa4.69□□□□□ -1.66
CCDC88A-207ENST00000436346 DNAH11Q96DT5 4516 aa4.65□□□□□ -1.67
CCDC88A-207ENST00000436346 MT1FP04733 61 aa4.62□□□□□ -1.67
CCDC88A-207ENST00000436346 LCE3CQ5T5A8 94 aa4.6□□□□□ -1.67
CCDC88A-207ENST00000436346 PLECQ15149 4684 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-207ENST00000436346 SPRR2EP22531 72 aa4.55□□□□□ -1.68
CCDC88A-207ENST00000436346 SPRR2BP35325 72 aa4.55□□□□□ -1.68
CCDC88A-207ENST00000436346 SPRR2AP35326 72 aa4.55□□□□□ -1.68
CCDC88A-207ENST00000436346 PKD1P98161 4303 aa4.53□□□□□ -1.68
CCDC88A-207ENST00000436346 DNAH5Q8TE73 4624 aa4.48□□□□□ -1.69
CCDC88A-207ENST00000436346 LCE3BQ5TA77 95 aa4.44□□□□□ -1.7
CCDC88A-207ENST00000436346 SPRR2DP22532 72 aa4.43□□□□□ -1.7
CCDC88A-207ENST00000436346 DNAH8Q96JB1 4490 aa4.38□□□□□ -1.71
CCDC88A-207ENST00000436346 LCE2BO14633 110 aa4.37□□□□□ -1.71
CCDC88A-207ENST00000436346 TNXBP22105 4242 aa4.33□□□□□ -1.72
CCDC88A-207ENST00000436346 LRP1BQ9NZR2 4599 aa4.32□□□□□ -1.72
CCDC88A-207ENST00000436346 KRTAP19-4Q3LI73 84 aa4.29□□□□□ -1.72
CCDC88A-207ENST00000436346 KRTAP12-4P60329 112 aa4.29□□□□□ -1.72
CCDC88A-207ENST00000436346 MT1GP13640 62 aa4.27□□□□□ -1.73
CCDC88A-207ENST00000436346 MT1XP80297 61 aa4.25□□□□□ -1.73
CCDC88A-207ENST00000436346 HSPG2P98160 4391 aa4.25□□□□□ -1.73
CCDC88A-207ENST00000436346 KRTAP19-8Q3LI54 63 aa4.2□□□□□ -1.74
CCDC88A-207ENST00000436346 KRTAP19-1Q8IUB9 90 aa4.19□□□□□ -1.74
CCDC88A-207ENST00000436346 DNHD1Q96M86 4753 aa4.18□□□□□ -1.74
CCDC88A-207ENST00000436346 APOBP04114 4563 aaKnown RBP4.17□□□□□ -1.74
CCDC88A-207ENST00000436346 DYNC1H1Q14204 4646 aaKnown RBP4.14□□□□□ -1.75
CCDC88A-207ENST00000436346 FAT1Q14517 4588 aa4.14□□□□□ -1.75
CCDC88A-207ENST00000436346 KRTAP17-1Q9BYP8 105 aa4.13□□□□□ -1.75
CCDC88A-207ENST00000436346 FAT3Q8TDW7 4589 aa4.12□□□□□ -1.75
CCDC88A-207ENST00000436346 LRP1Q07954 4544 aaKnown RBP4.09□□□□□ -1.75
CCDC88A-207ENST00000436346 LCE2CQ5TA81 110 aa4.09□□□□□ -1.76
CCDC88A-207ENST00000436346 KRTAP9-8Q9BYQ0 159 aa4.09□□□□□ -1.76
CCDC88A-207ENST00000436346 KRTAP4-8A0A0G2JLE6 195 aa4.08□□□□□ -1.76
CCDC88A-207ENST00000436346 KRTAP4-8Q9BYQ9 185 aa4.08□□□□□ -1.76
CCDC88A-207ENST00000436346 SACSQ9NZJ4 4579 aa4.08□□□□□ -1.76
CCDC88A-207ENST00000436346 MT1BP07438 61 aa4.04□□□□□ -1.76
CCDC88A-207ENST00000436346 MYCBP2O75592 4640 aa4.04□□□□□ -1.76
CCDC88A-207ENST00000436346 SPRR5A0A1B0GTR4 108 aa4.03□□□□□ -1.77
CCDC88A-207ENST00000436346 KRTAP9-3Q9BYQ3 159 aa4.02□□□□□ -1.77
CCDC88A-207ENST00000436346 LCE3DQ9BYE3 92 aa4.01□□□□□ -1.77
CCDC88A-207ENST00000436346 LCE2DQ5TA82 110 aaPredicted RBP3.99□□□□□ -1.77
CCDC88A-207ENST00000436346 MT4P47944 62 aa3.99□□□□□ -1.77
CCDC88A-207ENST00000436346 LPAP08519 4548 aa3.98□□□□□ -1.77
CCDC88A-207ENST00000436346 KRTAP19-3Q7Z4W3 81 aa3.95□□□□□ -1.78
CCDC88A-207ENST00000436346 RYR1P21817 5038 aa3.93□□□□□ -1.78
CCDC88A-207ENST00000436346 RYR3Q15413 4870 aa3.93□□□□□ -1.78
CCDC88A-207ENST00000436346 LCE3EQ5T5B0 92 aa3.89□□□□□ -1.79
CCDC88A-207ENST00000436346 MT1LQ93083 61 aa3.87□□□□□ -1.79
CCDC88A-207ENST00000436346 KRTAP9-2Q9BYQ4 174 aa3.86□□□□□ -1.79
CCDC88A-207ENST00000436346 MT1EP04732 61 aa3.82□□□□□ -1.8
CCDC88A-207ENST00000436346 KRTAP4-7Q9BYR0 210 aa3.82□□□□□ -1.8
CCDC88A-207ENST00000436346 LRP2P98164 4655 aa3.81□□□□□ -1.8
CCDC88A-207ENST00000436346 LCE1DQ5T752 114 aa3.75□□□□□ -1.81
CCDC88A-207ENST00000436346 MT1MQ8N339 61 aa3.75□□□□□ -1.81
CCDC88A-207ENST00000436346 MUC17Q685J3 4493 aa3.75□□□□□ -1.81
CCDC88A-207ENST00000436346 LOC100996750A0A140TA64 210 aa3.74□□□□□ -1.81
CCDC88A-207ENST00000436346 PCLOQ9Y6V0 5065 aa3.73□□□□□ -1.81
CCDC88A-207ENST00000436346 LCE1BQ5T7P3 118 aa3.72□□□□□ -1.81
CCDC88A-207ENST00000436346 MT3P25713 68 aa3.7□□□□□ -1.82
CCDC88A-207ENST00000436346 PRM1P04553 51 aa3.67□□□□□ -1.82
CCDC88A-207ENST00000436346 KIAA1109Q2LD37 5005 aa3.66□□□□□ -1.82
CCDC88A-207ENST00000436346 KRTAP19-6Q3LI70 58 aa3.65□□□□□ -1.82
CCDC88A-207ENST00000436346 KRTAP19-2Q3LHN2 52 aa3.64□□□□□ -1.83
CCDC88A-207ENST00000436346 KRTAP4-3Q9BYR4 195 aa3.63□□□□□ -1.83
CCDC88A-207ENST00000436346 KRTAP9-6A0A140TA67 174 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms