RNA–Protein interactions for RNA: ENST00000435070.6

CPSF6-202, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF6, Length 6,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-202ENST00000435070 DNAH6Q9C0G6 4158 aa3.94□□□□□ -1.78
CPSF6-202ENST00000435070 KRTAP15-1Q3LI76 137 aa3.93□□□□□ -1.78
CPSF6-202ENST00000435070 KRTAP10-6P60371 365 aaPredicted RBP3.89□□□□□ -1.79
CPSF6-202ENST00000435070 KRTAP12-2P59991 146 aa3.85□□□□□ -1.79
CPSF6-202ENST00000435070 A0A1B0GVY2 172 aa3.84□□□□□ -1.79
CPSF6-202ENST00000435070 VPS13BQ7Z7G8 4022 aa3.83□□□□□ -1.8
CPSF6-202ENST00000435070 DYNC2H1Q8NCM8 4307 aaKnown RBP3.82□□□□□ -1.8
CPSF6-202ENST00000435070 DNAH5Q8TE73 4624 aa3.82□□□□□ -1.8
CPSF6-202ENST00000435070 KRTAP3-2Q9BYR7 98 aa3.82□□□□□ -1.8
CPSF6-202ENST00000435070 KRTAP10-8P60410 259 aa3.82□□□□□ -1.8
CPSF6-202ENST00000435070 KRTAP3-3Q9BYR6 98 aa3.81□□□□□ -1.8
CPSF6-202ENST00000435070 RPS29P62273 56 aaKnown RBP3.8□□□□□ -1.8
CPSF6-202ENST00000435070 PRKDCP78527 4128 aaKnown RBP3.77□□□□□ -1.81
CPSF6-202ENST00000435070 KRTAP12-1P59990 96 aa3.76□□□□□ -1.81
CPSF6-202ENST00000435070 FAT2Q9NYQ8 4349 aa3.75□□□□□ -1.81
CPSF6-202ENST00000435070 XP32Q5T750 250 aa3.72□□□□□ -1.81
CPSF6-202ENST00000435070 FAT1Q14517 4588 aa3.72□□□□□ -1.81
CPSF6-202ENST00000435070 MYCBP2O75592 4640 aa3.71□□□□□ -1.82
CPSF6-202ENST00000435070 KRTAP10-10P60014 251 aa3.69□□□□□ -1.82
CPSF6-202ENST00000435070 HYDINQ4G0P3 5121 aa3.67□□□□□ -1.82
CPSF6-202ENST00000435070 PKHD1P08F94 4074 aa3.64□□□□□ -1.83
CPSF6-202ENST00000435070 DYNC1H1Q14204 4646 aaKnown RBP3.64□□□□□ -1.83
CPSF6-202ENST00000435070 PKD1P98161 4303 aa3.63□□□□□ -1.83
CPSF6-202ENST00000435070 APOBP04114 4563 aaKnown RBP3.62□□□□□ -1.83
CPSF6-202ENST00000435070 PRO2289Q9P1D8 64 aa3.62□□□□□ -1.83
CPSF6-202ENST00000435070 SACSQ9NZJ4 4579 aa3.62□□□□□ -1.83
CPSF6-202ENST00000435070 HSPG2P98160 4391 aa3.61□□□□□ -1.83
CPSF6-202ENST00000435070 LRP1Q07954 4544 aaKnown RBP3.6□□□□□ -1.83
CPSF6-202ENST00000435070 KRTAP21-3Q3LHN1 58 aa3.6□□□□□ -1.83
CPSF6-202ENST00000435070 INE1O15225 51 aa3.58□□□□□ -1.84
CPSF6-202ENST00000435070 KRTAP23-1A1A580 65 aa3.55□□□□□ -1.84
CPSF6-202ENST00000435070 KRTAP10-4P60372 401 aaPredicted RBP3.53□□□□□ -1.84
CPSF6-202ENST00000435070 DNHD1Q96M86 4753 aa3.51□□□□□ -1.85
CPSF6-202ENST00000435070 FAT3Q8TDW7 4589 aa3.5□□□□□ -1.85
CPSF6-202ENST00000435070 LPAP08519 4548 aa3.5□□□□□ -1.85
CPSF6-202ENST00000435070 LORP23490 312 aaPredicted RBP3.49□□□□□ -1.85
CPSF6-202ENST00000435070 PKHD1L1Q86WI1 4243 aa3.48□□□□□ -1.85
CPSF6-202ENST00000435070 LRP2P98164 4655 aa3.46□□□□□ -1.86
CPSF6-202ENST00000435070 KMT2CQ8NEZ4 4911 aaKnown RBP3.42□□□□□ -1.86
CPSF6-202ENST00000435070 TNXBP22105 4242 aa3.35□□□□□ -1.87
CPSF6-202ENST00000435070 CRCT1Q9UGL9 99 aa3.32□□□□□ -1.88
CPSF6-202ENST00000435070 RYR1P21817 5038 aa3.29□□□□□ -1.88
CPSF6-202ENST00000435070 MT1HL1P0DM35 61 aa3.27□□□□□ -1.89
CPSF6-202ENST00000435070 KRTAP17-1Q9BYP8 105 aa3.27□□□□□ -1.89
CPSF6-202ENST00000435070 KIAA1109Q2LD37 5005 aa3.26□□□□□ -1.89
CPSF6-202ENST00000435070 SPRR5A0A1B0GTR4 108 aa3.23□□□□□ -1.89
CPSF6-202ENST00000435070 KRTAP4-1Q9BYQ7 146 aa3.2□□□□□ -1.9
CPSF6-202ENST00000435070 ABCA13Q86UQ4 5058 aa3.19□□□□□ -1.9
CPSF6-202ENST00000435070 RYR2Q92736 4967 aa3.17□□□□□ -1.9
CPSF6-202ENST00000435070 MUC2Q02817 5179 aa3.17□□□□□ -1.9
CPSF6-202ENST00000435070 RYR3Q15413 4870 aa3.16□□□□□ -1.9
CPSF6-202ENST00000435070 KRTAP10-5P60370 271 aa3.11□□□□□ -1.91
CPSF6-202ENST00000435070 KRTAP10-7P60409 375 aaPredicted RBP3.11□□□□□ -1.91
CPSF6-202ENST00000435070 LCE3AQ5TA76 89 aa3.11□□□□□ -1.91
CPSF6-202ENST00000435070 KRTAP10-12P60413 245 aa3.1□□□□□ -1.91
CPSF6-202ENST00000435070 MUC17Q685J3 4493 aa3.09□□□□□ -1.91
CPSF6-202ENST00000435070 EPPK1P58107 5090 aaKnown RBP3.09□□□□□ -1.91
CPSF6-202ENST00000435070 KRTAP4-5Q9BYR2 181 aa3.06□□□□□ -1.92
CPSF6-202ENST00000435070 KRTAP19-2Q3LHN2 52 aa3.05□□□□□ -1.92
CPSF6-202ENST00000435070 FAT4Q6V0I7 4981 aa3□□□□□ -1.93
CPSF6-202ENST00000435070 PCLOQ9Y6V0 5065 aa2.99□□□□□ -1.93
CPSF6-202ENST00000435070 KRTAP12-3P60328 96 aa2.96□□□□□ -1.94
CPSF6-202ENST00000435070 FLGP20930 4061 aaPredicted RBP2.95□□□□□ -1.94
CPSF6-202ENST00000435070 KRTAP8-1Q8IUC2 63 aa2.95□□□□□ -1.94
CPSF6-202ENST00000435070 KRTAP19-1Q8IUB9 90 aa2.94□□□□□ -1.94
CPSF6-202ENST00000435070 HMCN2Q8NDA2 5059 aa2.9□□□□□ -1.95
CPSF6-202ENST00000435070 SPRR2GQ9BYE4 73 aa2.89□□□□□ -1.95
CPSF6-202ENST00000435070 HERC1Q15751 4861 aa2.88□□□□□ -1.95
CPSF6-202ENST00000435070 HERC2O95714 4834 aa2.85□□□□□ -1.95
CPSF6-202ENST00000435070 UBR4Q5T4S7 5183 aa2.85□□□□□ -1.95
CPSF6-202ENST00000435070 RNF213Q63HN8 5207 aa2.82□□□□□ -1.96
CPSF6-202ENST00000435070 MT1FP04733 61 aa2.8□□□□□ -1.96
CPSF6-202ENST00000435070 LCE2CQ5TA81 110 aa2.79□□□□□ -1.96
CPSF6-202ENST00000435070 MT1XP80297 61 aa2.78□□□□□ -1.96
CPSF6-202ENST00000435070 MT2AP02795 61 aa2.77□□□□□ -1.97
CPSF6-202ENST00000435070 KMT2DO14686 5537 aa2.76□□□□□ -1.97
CPSF6-202ENST00000435070 BIRC6Q9NR09 4857 aa2.75□□□□□ -1.97
CPSF6-202ENST00000435070 SPRR2FQ96RM1 72 aa2.75□□□□□ -1.97
CPSF6-202ENST00000435070 MT1BP07438 61 aa2.73□□□□□ -1.97
CPSF6-202ENST00000435070 LCE3CQ5T5A8 94 aa2.73□□□□□ -1.97
CPSF6-202ENST00000435070 KRTAP19-5Q3LI72 72 aa2.73□□□□□ -1.97
CPSF6-202ENST00000435070 MT1HP80294 61 aa2.72□□□□□ -1.97
CPSF6-202ENST00000435070 KRTAP9-6A8MVA2 160 aa2.71□□□□□ -1.98
CPSF6-202ENST00000435070 MT3P25713 68 aa2.7□□□□□ -1.98
CPSF6-202ENST00000435070 KRTAP19-8Q3LI54 63 aa2.69□□□□□ -1.98
CPSF6-202ENST00000435070 KRTAP9-8Q9BYQ0 159 aa2.69□□□□□ -1.98
CPSF6-202ENST00000435070 KRTAP4-7Q9BYR0 210 aa2.68□□□□□ -1.98
CPSF6-202ENST00000435070 SPRR2EP22531 72 aa2.66□□□□□ -1.98
CPSF6-202ENST00000435070 SPRR2BP35325 72 aa2.66□□□□□ -1.98
CPSF6-202ENST00000435070 SPRR2AP35326 72 aa2.66□□□□□ -1.98
CPSF6-202ENST00000435070 USH2AO75445 5202 aa2.66□□□□□ -1.98
CPSF6-202ENST00000435070 KRTAP4-8A0A0G2JLE6 195 aa2.63□□□□□ -1.99
CPSF6-202ENST00000435070 KRTAP4-8Q9BYQ9 185 aa2.63□□□□□ -1.99
CPSF6-202ENST00000435070 KRTAP19-4Q3LI73 84 aa2.61□□□□□ -1.99
CPSF6-202ENST00000435070 KRTAP2-3P0C7H8 128 aa2.6□□□□□ -1.99
CPSF6-202ENST00000435070 KRTAP2-4Q9BYR9 128 aa2.6□□□□□ -1.99
CPSF6-202ENST00000435070 KRTAP2-1Q9BYU5 128 aa2.6□□□□□ -1.99
CPSF6-202ENST00000435070 SPRR2DP22532 72 aa2.58□□□□□ -2
CPSF6-202ENST00000435070 KRTAP12-4P60329 112 aa2.56□□□□□ -2
CPSF6-202ENST00000435070 LCE3BQ5TA77 95 aa2.55□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms