RNA–Protein interactions for RNA: ENST00000429411.5

HPS4-205, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 3,492 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-205ENST00000429411 DNAH8Q96JB1 4490 aa4.48□□□□□ -1.69
HPS4-205ENST00000429411 KRTAP25-1Q3LHN0 102 aa4.46□□□□□ -1.7
HPS4-205ENST00000429411 KRTAP17-1Q9BYP8 105 aa4.46□□□□□ -1.7
HPS4-205ENST00000429411 Q6ZSA8 131 aa4.45□□□□□ -1.7
HPS4-205ENST00000429411 FAT2Q9NYQ8 4349 aa4.45□□□□□ -1.7
HPS4-205ENST00000429411 PCLOQ9Y6V0 5065 aa4.45□□□□□ -1.7
HPS4-205ENST00000429411 DNAH17Q9UFH2 4485 aa4.45□□□□□ -1.7
HPS4-205ENST00000429411 ABCA13Q86UQ4 5058 aa4.44□□□□□ -1.7
HPS4-205ENST00000429411 CRIPTQ9P021 101 aa4.43□□□□□ -1.7
HPS4-205ENST00000429411 VPS13BQ7Z7G8 4022 aa4.43□□□□□ -1.7
HPS4-205ENST00000429411 CAMK2N1Q7Z7J9 78 aa4.42□□□□□ -1.7
HPS4-205ENST00000429411 HECTD4Q9Y4D8 3996 aa4.41□□□□□ -1.7
HPS4-205ENST00000429411 HERC1Q15751 4861 aa4.41□□□□□ -1.7
HPS4-205ENST00000429411 A0A0D9SG42 100 aa4.4□□□□□ -1.7
HPS4-205ENST00000429411 A0A1B0GU33 70 aa4.4□□□□□ -1.71
HPS4-205ENST00000429411 LRP1Q07954 4544 aaKnown RBP4.4□□□□□ -1.71
HPS4-205ENST00000429411 PKD1P98161 4303 aa4.38□□□□□ -1.71
HPS4-205ENST00000429411 FAT3Q8TDW7 4589 aa4.38□□□□□ -1.71
HPS4-205ENST00000429411 HSPG2P98160 4391 aa4.38□□□□□ -1.71
HPS4-205ENST00000429411 LCE2DQ5TA82 110 aaPredicted RBP4.36□□□□□ -1.71
HPS4-205ENST00000429411 KRTAP23-1A1A580 65 aa4.33□□□□□ -1.72
HPS4-205ENST00000429411 H1FX-AS1Q4G0G2 97 aa4.3□□□□□ -1.72
HPS4-205ENST00000429411 H0YAA0 97 aa4.3□□□□□ -1.72
HPS4-205ENST00000429411 COX6B2Q6YFQ2 88 aa4.29□□□□□ -1.72
HPS4-205ENST00000429411 KRTAP3-1Q9BYR8 98 aa4.26□□□□□ -1.73
HPS4-205ENST00000429411 RPS29P62273 56 aaKnown RBP4.25□□□□□ -1.73
HPS4-205ENST00000429411 LRP2P98164 4655 aa4.24□□□□□ -1.73
HPS4-205ENST00000429411 S4R3F8 94 aa4.22□□□□□ -1.73
HPS4-205ENST00000429411 UBR4Q5T4S7 5183 aa4.22□□□□□ -1.73
HPS4-205ENST00000429411 RNF213Q63HN8 5207 aa4.22□□□□□ -1.73
HPS4-205ENST00000429411 KRTAP10-4P60372 401 aaPredicted RBP4.2□□□□□ -1.74
HPS4-205ENST00000429411 RPL37P61927 97 aaKnown RBP4.18□□□□□ -1.74
HPS4-205ENST00000429411 KRTAP15-1Q3LI76 137 aa4.18□□□□□ -1.74
HPS4-205ENST00000429411 MT1HL1P0DM35 61 aa4.16□□□□□ -1.74
HPS4-205ENST00000429411 XP32Q5T750 250 aa4.15□□□□□ -1.75
HPS4-205ENST00000429411 KRTAP10-8P60410 259 aa4.15□□□□□ -1.75
HPS4-205ENST00000429411 C10orf95Q9H7T3 257 aa4.13□□□□□ -1.75
HPS4-205ENST00000429411 KRTAP3-3Q9BYR6 98 aa4.12□□□□□ -1.75
HPS4-205ENST00000429411 KRTAP3-2Q9BYR7 98 aa4.12□□□□□ -1.75
HPS4-205ENST00000429411 MUC2Q02817 5179 aa4.1□□□□□ -1.75
HPS4-205ENST00000429411 KRTAP13-4Q3LI77 160 aa4.09□□□□□ -1.75
HPS4-205ENST00000429411 R4GN34 69 aa4.09□□□□□ -1.75
HPS4-205ENST00000429411 LPAP08519 4548 aa4.07□□□□□ -1.76
HPS4-205ENST00000429411 PKHD1L1Q86WI1 4243 aa4.07□□□□□ -1.76
HPS4-205ENST00000429411 M0QZ58 72 aa4.05□□□□□ -1.76
HPS4-205ENST00000429411 KRTAP10-6P60371 365 aaPredicted RBP4.05□□□□□ -1.76
HPS4-205ENST00000429411 HMCN2Q8NDA2 5059 aa4□□□□□ -1.77
HPS4-205ENST00000429411 KRTAP12-2P59991 146 aa4□□□□□ -1.77
HPS4-205ENST00000429411 FSIP2Q5CZC0 6907 aa3.98□□□□□ -1.77
HPS4-205ENST00000429411 TPRXLQ17RH7 258 aa3.98□□□□□ -1.77
HPS4-205ENST00000429411 TNXBP22105 4242 aa3.94□□□□□ -1.78
HPS4-205ENST00000429411 FAT4Q6V0I7 4981 aa3.93□□□□□ -1.78
HPS4-205ENST00000429411 PRO2289Q9P1D8 64 aa3.93□□□□□ -1.78
HPS4-205ENST00000429411 M0R2T5 61 aa3.92□□□□□ -1.78
HPS4-205ENST00000429411 KRTAP12-1P59990 96 aa3.92□□□□□ -1.78
HPS4-205ENST00000429411 LCE2CQ5TA81 110 aa3.82□□□□□ -1.8
HPS4-205ENST00000429411 LORP23490 312 aaPredicted RBP3.8□□□□□ -1.8
HPS4-205ENST00000429411 PLAC4Q8WY50 150 aa3.79□□□□□ -1.8
HPS4-205ENST00000429411 KRTAP4-1Q9BYQ7 146 aa3.77□□□□□ -1.81
HPS4-205ENST00000429411 LCE2AQ5TA79 106 aaPredicted RBP3.75□□□□□ -1.81
HPS4-205ENST00000429411 LCE2BO14633 110 aa3.73□□□□□ -1.81
HPS4-205ENST00000429411 TNP1P09430 55 aa3.63□□□□□ -1.83
HPS4-205ENST00000429411 INE1O15225 51 aa3.58□□□□□ -1.84
HPS4-205ENST00000429411 MUC17Q685J3 4493 aa3.57□□□□□ -1.84
HPS4-205ENST00000429411 KRTAP10-10P60014 251 aa3.56□□□□□ -1.84
HPS4-205ENST00000429411 MT1HP80294 61 aa3.56□□□□□ -1.84
HPS4-205ENST00000429411 PP632Q6XCG6 107 aa3.56□□□□□ -1.84
HPS4-205ENST00000429411 USH2AO75445 5202 aa3.55□□□□□ -1.84
HPS4-205ENST00000429411 KRTAP9-2Q9BYQ4 174 aa3.5□□□□□ -1.85
HPS4-205ENST00000429411 KRTAP19-2Q3LHN2 52 aa3.46□□□□□ -1.86
HPS4-205ENST00000429411 FLGP20930 4061 aaPredicted RBP3.4□□□□□ -1.87
HPS4-205ENST00000429411 SPRR5A0A1B0GTR4 108 aa3.37□□□□□ -1.87
HPS4-205ENST00000429411 LCE3AQ5TA76 89 aa3.37□□□□□ -1.87
HPS4-205ENST00000429411 MT1FP04733 61 aa3.36□□□□□ -1.87
HPS4-205ENST00000429411 MT2AP02795 61 aa3.36□□□□□ -1.87
HPS4-205ENST00000429411 CRCT1Q9UGL9 99 aa3.32□□□□□ -1.88
HPS4-205ENST00000429411 KRTAP9-8Q9BYQ0 159 aa3.32□□□□□ -1.88
HPS4-205ENST00000429411 KRTAP19-1Q8IUB9 90 aa3.32□□□□□ -1.88
HPS4-205ENST00000429411 KRTAP9-6A0A140TA67 174 aa3.31□□□□□ -1.88
HPS4-205ENST00000429411 SPRR2GQ9BYE4 73 aa3.28□□□□□ -1.88
HPS4-205ENST00000429411 SSPOA2VEC9 5147 aa3.27□□□□□ -1.89
HPS4-205ENST00000429411 SYNE2Q8WXH0 6885 aaKnown RBP3.27□□□□□ -1.89
HPS4-205ENST00000429411 KRTAP10-12P60413 245 aa3.23□□□□□ -1.89
HPS4-205ENST00000429411 MACF1Q9UPN3 7388 aaKnown RBP3.21□□□□□ -1.89
HPS4-205ENST00000429411 KRTAP12-3P60328 96 aa3.21□□□□□ -1.9
HPS4-205ENST00000429411 FCGBPQ9Y6R7 5405 aaPredicted RBP3.2□□□□□ -1.9
HPS4-205ENST00000429411 KRTAP9-3Q9BYQ3 159 aa3.2□□□□□ -1.9
HPS4-205ENST00000429411 OBSCNQ5VST9 7968 aa3.18□□□□□ -1.9
HPS4-205ENST00000429411 KRTAP10-7P60409 375 aaPredicted RBP3.14□□□□□ -1.91
HPS4-205ENST00000429411 MT1BP07438 61 aa3.14□□□□□ -1.91
HPS4-205ENST00000429411 MT1XP80297 61 aa3.13□□□□□ -1.91
HPS4-205ENST00000429411 KRTAP10-5P60370 271 aa3.13□□□□□ -1.91
HPS4-205ENST00000429411 KMT2DO14686 5537 aa3.13□□□□□ -1.91
HPS4-205ENST00000429411 KRTAP8-1Q8IUC2 63 aa3.11□□□□□ -1.91
HPS4-205ENST00000429411 KRTAP19-8Q3LI54 63 aa3.09□□□□□ -1.91
HPS4-205ENST00000429411 KRTAP19-5Q3LI72 72 aa3.05□□□□□ -1.92
HPS4-205ENST00000429411 KRTAP9-7A8MTY7 169 aa3.04□□□□□ -1.92
HPS4-205ENST00000429411 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.04□□□□□ -1.92
HPS4-205ENST00000429411 KRTAP4-8A0A0G2JLE6 195 aa3.03□□□□□ -1.92
HPS4-205ENST00000429411 KRTAP4-8Q9BYQ9 185 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms