RNA–Protein interactions for RNA: ENST00000427516.2

VTI1BP4-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 4, humanhuman

BASIC

Gene VTI1BP4, Length 527 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP4-201ENST00000427516 DNAH3Q8TD57 4116 aa2.78□□□□□ -1.97
VTI1BP4-201ENST00000427516 PKD1L1Q8TDX9 2849 aa2.77□□□□□ -1.97
VTI1BP4-201ENST00000427516 TENM3Q9P273 2699 aa2.76□□□□□ -1.97
VTI1BP4-201ENST00000427516 CMYA5Q8N3K9 4069 aa2.76□□□□□ -1.97
VTI1BP4-201ENST00000427516 VPS13DQ5THJ4 4388 aa2.76□□□□□ -1.97
VTI1BP4-201ENST00000427516 NBEAL1Q6ZS30 2694 aa2.75□□□□□ -1.97
VTI1BP4-201ENST00000427516 R4GN34 69 aa2.75□□□□□ -1.97
VTI1BP4-201ENST00000427516 FBN1P35555 2871 aaKnown RBP2.75□□□□□ -1.97
VTI1BP4-201ENST00000427516 KRTAP10-7P60409 375 aaPredicted RBP2.74□□□□□ -1.97
VTI1BP4-201ENST00000427516 ATRQ13535 2644 aa2.74□□□□□ -1.97
VTI1BP4-201ENST00000427516 NSD1Q96L73 2696 aaPredicted RBP2.73□□□□□ -1.97
VTI1BP4-201ENST00000427516 CUBNO60494 3623 aa2.72□□□□□ -1.97
VTI1BP4-201ENST00000427516 ANK2Q01484 3957 aa2.71□□□□□ -1.98
VTI1BP4-201ENST00000427516 KRTAP5-11Q6L8G4 156 aa2.71□□□□□ -1.98
VTI1BP4-201ENST00000427516 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.71□□□□□ -1.98
VTI1BP4-201ENST00000427516 TENM1Q9UKZ4 2725 aa2.7□□□□□ -1.98
VTI1BP4-201ENST00000427516 COL6A5A8TX70 2615 aa2.7□□□□□ -1.98
VTI1BP4-201ENST00000427516 KRTAP10-1P60331 282 aa2.7□□□□□ -1.98
VTI1BP4-201ENST00000427516 DYNC2H1Q8NCM8 4307 aaKnown RBP2.7□□□□□ -1.98
VTI1BP4-201ENST00000427516 ITPR2Q14571 2701 aa2.7□□□□□ -1.98
VTI1BP4-201ENST00000427516 DNAH8Q96JB1 4490 aa2.69□□□□□ -1.98
VTI1BP4-201ENST00000427516 STAB2Q8WWQ8 2551 aa2.68□□□□□ -1.98
VTI1BP4-201ENST00000427516 SPRR5A0A1B0GTR4 108 aa2.67□□□□□ -1.98
VTI1BP4-201ENST00000427516 TRRAPQ9Y4A5 3859 aa2.67□□□□□ -1.98
VTI1BP4-201ENST00000427516 FRAS1Q86XX4 4008 aa2.66□□□□□ -1.98
VTI1BP4-201ENST00000427516 Q5VSD8 79 aa2.66□□□□□ -1.98
VTI1BP4-201ENST00000427516 COL7A1Q02388 2944 aa2.66□□□□□ -1.98
VTI1BP4-201ENST00000427516 TNP1P09430 55 aa2.65□□□□□ -1.99
VTI1BP4-201ENST00000427516 KRTAP10-8P60410 259 aa2.65□□□□□ -1.99
VTI1BP4-201ENST00000427516 DNAH10Q8IVF4 4471 aa2.65□□□□□ -1.99
VTI1BP4-201ENST00000427516 NOTCH1P46531 2555 aa2.64□□□□□ -1.99
VTI1BP4-201ENST00000427516 CSMD3Q7Z407 3707 aa2.64□□□□□ -1.99
VTI1BP4-201ENST00000427516 HUWE1Q7Z6Z7 4374 aaKnown RBP2.64□□□□□ -1.99
VTI1BP4-201ENST00000427516 DNAH9Q9NYC9 4486 aa2.62□□□□□ -1.99
VTI1BP4-201ENST00000427516 LYSTQ99698 3801 aa2.62□□□□□ -1.99
VTI1BP4-201ENST00000427516 PRKDCP78527 4128 aaKnown RBP2.61□□□□□ -1.99
VTI1BP4-201ENST00000427516 LCE1EQ5T753 118 aa2.61□□□□□ -1.99
VTI1BP4-201ENST00000427516 DNAH17Q9UFH2 4485 aa2.59□□□□□ -1.99
VTI1BP4-201ENST00000427516 MGAM2Q2M2H8 2515 aa2.59□□□□□ -2
VTI1BP4-201ENST00000427516 DNAH6Q9C0G6 4158 aa2.57□□□□□ -2
VTI1BP4-201ENST00000427516 HECTD4Q9Y4D8 3996 aa2.56□□□□□ -2
VTI1BP4-201ENST00000427516 DMBT1Q9UGM3 2413 aaPredicted RBP2.56□□□□□ -2
VTI1BP4-201ENST00000427516 DNAH7Q8WXX0 4024 aa2.55□□□□□ -2
VTI1BP4-201ENST00000427516 FBN3Q75N90 2809 aa2.55□□□□□ -2
VTI1BP4-201ENST00000427516 DNHD1Q96M86 4753 aa2.54□□□□□ -2
VTI1BP4-201ENST00000427516 STAB1Q9NY15 2570 aa2.54□□□□□ -2
VTI1BP4-201ENST00000427516 DNAH2Q9P225 4427 aa2.53□□□□□ -2
VTI1BP4-201ENST00000427516 PLECQ15149 4684 aaKnown RBP2.53□□□□□ -2
VTI1BP4-201ENST00000427516 MT3P25713 68 aa2.53□□□□□ -2
VTI1BP4-201ENST00000427516 DNAH11Q96DT5 4516 aa2.48□□□□□ -2.01
VTI1BP4-201ENST00000427516 SMR3BP02814 79 aaPredicted RBP2.47□□□□□ -2.01
VTI1BP4-201ENST00000427516 KRTAP10-4P60372 401 aaPredicted RBP2.47□□□□□ -2.01
VTI1BP4-201ENST00000427516 SACSQ9NZJ4 4579 aa2.46□□□□□ -2.02
VTI1BP4-201ENST00000427516 DNAH5Q8TE73 4624 aa2.45□□□□□ -2.02
VTI1BP4-201ENST00000427516 KMT2AQ03164 3969 aa2.45□□□□□ -2.02
VTI1BP4-201ENST00000427516 STARD9Q9P2P6 4700 aa2.44□□□□□ -2.02
VTI1BP4-201ENST00000427516 PKHD1L1Q86WI1 4243 aa2.41□□□□□ -2.02
VTI1BP4-201ENST00000427516 KRTAP10-5P60370 271 aa2.4□□□□□ -2.03
VTI1BP4-201ENST00000427516 LRP1BQ9NZR2 4599 aa2.4□□□□□ -2.03
VTI1BP4-201ENST00000427516 PKD1P98161 4303 aa2.39□□□□□ -2.03
VTI1BP4-201ENST00000427516 VPS13BQ7Z7G8 4022 aa2.39□□□□□ -2.03
VTI1BP4-201ENST00000427516 PKHD1P08F94 4074 aa2.38□□□□□ -2.03
VTI1BP4-201ENST00000427516 A0A1B0GVY2 172 aa2.38□□□□□ -2.03
VTI1BP4-201ENST00000427516 FAT2Q9NYQ8 4349 aa2.36□□□□□ -2.03
VTI1BP4-201ENST00000427516 KRTAP21-3Q3LHN1 58 aa2.35□□□□□ -2.03
VTI1BP4-201ENST00000427516 KRTAP5-1Q6L8H4 278 aa2.35□□□□□ -2.03
VTI1BP4-201ENST00000427516 MYCBP2O75592 4640 aa2.34□□□□□ -2.04
VTI1BP4-201ENST00000427516 LCE1FQ5T754 118 aa2.33□□□□□ -2.04
VTI1BP4-201ENST00000427516 APOBP04114 4563 aaKnown RBP2.32□□□□□ -2.04
VTI1BP4-201ENST00000427516 KRTAP9-6A8MVA2 160 aa2.32□□□□□ -2.04
VTI1BP4-201ENST00000427516 KRTAP10-12P60413 245 aa2.32□□□□□ -2.04
VTI1BP4-201ENST00000427516 LRP1Q07954 4544 aaKnown RBP2.32□□□□□ -2.04
VTI1BP4-201ENST00000427516 KRTAP8-1Q8IUC2 63 aa2.31□□□□□ -2.04
VTI1BP4-201ENST00000427516 TNXBP22105 4242 aa2.3□□□□□ -2.04
VTI1BP4-201ENST00000427516 DYNC1H1Q14204 4646 aaKnown RBP2.28□□□□□ -2.04
VTI1BP4-201ENST00000427516 HSPG2P98160 4391 aa2.27□□□□□ -2.05
VTI1BP4-201ENST00000427516 FAT3Q8TDW7 4589 aa2.26□□□□□ -2.05
VTI1BP4-201ENST00000427516 HYDINQ4G0P3 5121 aa2.26□□□□□ -2.05
VTI1BP4-201ENST00000427516 LCE3AQ5TA76 89 aa2.25□□□□□ -2.05
VTI1BP4-201ENST00000427516 KRTAP5-4Q6L8H1 288 aa2.25□□□□□ -2.05
VTI1BP4-201ENST00000427516 KRTAP4-4Q9BYR3 166 aa2.25□□□□□ -2.05
VTI1BP4-201ENST00000427516 FAT1Q14517 4588 aa2.24□□□□□ -2.05
VTI1BP4-201ENST00000427516 MT1HL1P0DM35 61 aa2.24□□□□□ -2.05
VTI1BP4-201ENST00000427516 KMT2CQ8NEZ4 4911 aaKnown RBP2.24□□□□□ -2.05
VTI1BP4-201ENST00000427516 RYR3Q15413 4870 aa2.23□□□□□ -2.05
VTI1BP4-201ENST00000427516 KRTAP10-10P60014 251 aa2.23□□□□□ -2.05
VTI1BP4-201ENST00000427516 RYR2Q92736 4967 aa2.23□□□□□ -2.05
VTI1BP4-201ENST00000427516 KRTAP12-3P60328 96 aa2.22□□□□□ -2.05
VTI1BP4-201ENST00000427516 SPRR2GQ9BYE4 73 aa2.22□□□□□ -2.05
VTI1BP4-201ENST00000427516 KRTAP5-9P26371 169 aa2.2□□□□□ -2.06
VTI1BP4-201ENST00000427516 LCE3CQ5T5A8 94 aa2.19□□□□□ -2.06
VTI1BP4-201ENST00000427516 FLGP20930 4061 aaPredicted RBP2.17□□□□□ -2.06
VTI1BP4-201ENST00000427516 EPPK1P58107 5090 aaKnown RBP2.17□□□□□ -2.06
VTI1BP4-201ENST00000427516 BIRC6Q9NR09 4857 aa2.17□□□□□ -2.06
VTI1BP4-201ENST00000427516 M0R2T5 61 aa2.15□□□□□ -2.07
VTI1BP4-201ENST00000427516 KRTAP19-2Q3LHN2 52 aa2.1□□□□□ -2.07
VTI1BP4-201ENST00000427516 RYR1P21817 5038 aa2.09□□□□□ -2.07
VTI1BP4-201ENST00000427516 KRTAP2-3P0C7H8 128 aa2.08□□□□□ -2.08
VTI1BP4-201ENST00000427516 KRTAP2-4Q9BYR9 128 aa2.08□□□□□ -2.08
VTI1BP4-201ENST00000427516 KRTAP2-1Q9BYU5 128 aa2.08□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms