RNA–Protein interactions for RNA: ENST00000425518.5

SMARCC1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 2

Gene SMARCC1, Length 3,827 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-202ENST00000425518 A0A1B0GVY2 172 aa3.93□□□□□ -1.78
SMARCC1-202ENST00000425518 KRTAP25-1Q3LHN0 102 aa3.93□□□□□ -1.78
SMARCC1-202ENST00000425518 PKHD1L1Q86WI1 4243 aa3.93□□□□□ -1.78
SMARCC1-202ENST00000425518 MYCBP2O75592 4640 aa3.92□□□□□ -1.78
SMARCC1-202ENST00000425518 A0A0D9SG42 100 aa3.92□□□□□ -1.78
SMARCC1-202ENST00000425518 LRP1Q07954 4544 aaKnown RBP3.92□□□□□ -1.78
SMARCC1-202ENST00000425518 FAT3Q8TDW7 4589 aa3.87□□□□□ -1.79
SMARCC1-202ENST00000425518 HSPG2P98160 4391 aa3.87□□□□□ -1.79
SMARCC1-202ENST00000425518 KRTAP10-6P60371 365 aaPredicted RBP3.86□□□□□ -1.79
SMARCC1-202ENST00000425518 KRTAP10-8P60410 259 aa3.86□□□□□ -1.79
SMARCC1-202ENST00000425518 KRTAP3-3Q9BYR6 98 aa3.86□□□□□ -1.79
SMARCC1-202ENST00000425518 RPL37P61927 97 aaKnown RBP3.86□□□□□ -1.79
SMARCC1-202ENST00000425518 KRTAP13-4Q3LI77 160 aa3.86□□□□□ -1.79
SMARCC1-202ENST00000425518 Q5VSD8 79 aa3.86□□□□□ -1.79
SMARCC1-202ENST00000425518 BIRC6Q9NR09 4857 aa3.85□□□□□ -1.79
SMARCC1-202ENST00000425518 ROMO1P60602 79 aa3.85□□□□□ -1.79
SMARCC1-202ENST00000425518 S4R3F8 94 aa3.85□□□□□ -1.79
SMARCC1-202ENST00000425518 XP32Q5T750 250 aa3.84□□□□□ -1.8
SMARCC1-202ENST00000425518 KRTAP3-2Q9BYR7 98 aa3.83□□□□□ -1.8
SMARCC1-202ENST00000425518 P0C880 135 aa3.82□□□□□ -1.8
SMARCC1-202ENST00000425518 TNXBP22105 4242 aa3.81□□□□□ -1.8
SMARCC1-202ENST00000425518 HERC2O95714 4834 aa3.81□□□□□ -1.8
SMARCC1-202ENST00000425518 SPINT4Q6UDR6 99 aa3.77□□□□□ -1.81
SMARCC1-202ENST00000425518 C10orf95Q9H7T3 257 aa3.77□□□□□ -1.81
SMARCC1-202ENST00000425518 PCLOQ9Y6V0 5065 aa3.77□□□□□ -1.81
SMARCC1-202ENST00000425518 RYR1P21817 5038 aa3.76□□□□□ -1.81
SMARCC1-202ENST00000425518 TPRXLQ17RH7 258 aa3.76□□□□□ -1.81
SMARCC1-202ENST00000425518 KRTAP17-1Q9BYP8 105 aa3.75□□□□□ -1.81
SMARCC1-202ENST00000425518 KRTAP12-2P59991 146 aa3.74□□□□□ -1.81
SMARCC1-202ENST00000425518 ABCA13Q86UQ4 5058 aa3.74□□□□□ -1.81
SMARCC1-202ENST00000425518 KIAA1109Q2LD37 5005 aa3.74□□□□□ -1.81
SMARCC1-202ENST00000425518 LPAP08519 4548 aa3.73□□□□□ -1.81
SMARCC1-202ENST00000425518 LRP2P98164 4655 aa3.72□□□□□ -1.81
SMARCC1-202ENST00000425518 MT1HL1P0DM35 61 aa3.7□□□□□ -1.82
SMARCC1-202ENST00000425518 KRTAP12-1P59990 96 aa3.69□□□□□ -1.82
SMARCC1-202ENST00000425518 A0A0A0MQY5 61 aa3.65□□□□□ -1.83
SMARCC1-202ENST00000425518 M0QZ58 72 aa3.65□□□□□ -1.83
SMARCC1-202ENST00000425518 KRTAP4-5Q9BYR2 181 aa3.62□□□□□ -1.83
SMARCC1-202ENST00000425518 R4GN34 69 aa3.61□□□□□ -1.83
SMARCC1-202ENST00000425518 NDUFAF8A1L188 74 aa3.59□□□□□ -1.83
SMARCC1-202ENST00000425518 KRTAP15-1Q3LI76 137 aa3.58□□□□□ -1.84
SMARCC1-202ENST00000425518 HERC1Q15751 4861 aa3.56□□□□□ -1.84
SMARCC1-202ENST00000425518 LORP23490 312 aaPredicted RBP3.54□□□□□ -1.84
SMARCC1-202ENST00000425518 SEC61BP60468 96 aaKnown RBP3.53□□□□□ -1.84
SMARCC1-202ENST00000425518 KRTAP4-1Q9BYQ7 146 aa3.49□□□□□ -1.85
SMARCC1-202ENST00000425518 M0R2T5 61 aa3.49□□□□□ -1.85
SMARCC1-202ENST00000425518 CAMK2N1Q7Z7J9 78 aa3.46□□□□□ -1.86
SMARCC1-202ENST00000425518 MUC17Q685J3 4493 aa3.46□□□□□ -1.86
SMARCC1-202ENST00000425518 HMCN2Q8NDA2 5059 aa3.45□□□□□ -1.86
SMARCC1-202ENST00000425518 PLAC4Q8WY50 150 aa3.44□□□□□ -1.86
SMARCC1-202ENST00000425518 MUC2Q02817 5179 aa3.42□□□□□ -1.86
SMARCC1-202ENST00000425518 KRTAP19-2Q3LHN2 52 aa3.37□□□□□ -1.87
SMARCC1-202ENST00000425518 PP632Q6XCG6 107 aa3.34□□□□□ -1.88
SMARCC1-202ENST00000425518 UBR4Q5T4S7 5183 aa3.33□□□□□ -1.88
SMARCC1-202ENST00000425518 LUZP6Q538Z0 58 aa3.32□□□□□ -1.88
SMARCC1-202ENST00000425518 FLGP20930 4061 aaPredicted RBP3.3□□□□□ -1.88
SMARCC1-202ENST00000425518 TNP1P09430 55 aa3.29□□□□□ -1.88
SMARCC1-202ENST00000425518 FAT4Q6V0I7 4981 aa3.26□□□□□ -1.89
SMARCC1-202ENST00000425518 RNF213Q63HN8 5207 aa3.22□□□□□ -1.89
SMARCC1-202ENST00000425518 LCE2CQ5TA81 110 aa3.17□□□□□ -1.9
SMARCC1-202ENST00000425518 KRTAP23-1A1A580 65 aa3.15□□□□□ -1.9
SMARCC1-202ENST00000425518 KRTAP19-1Q8IUB9 90 aa3.15□□□□□ -1.9
SMARCC1-202ENST00000425518 SPRR2GQ9BYE4 73 aa3.14□□□□□ -1.91
SMARCC1-202ENST00000425518 KRTAP10-10P60014 251 aa3.13□□□□□ -1.91
SMARCC1-202ENST00000425518 LCE3AQ5TA76 89 aa3.11□□□□□ -1.91
SMARCC1-202ENST00000425518 SPRR5A0A1B0GTR4 108 aa3.1□□□□□ -1.91
SMARCC1-202ENST00000425518 MT1HP80294 61 aa3.09□□□□□ -1.91
SMARCC1-202ENST00000425518 MT1FP04733 61 aa3.08□□□□□ -1.92
SMARCC1-202ENST00000425518 MT2AP02795 61 aa3.07□□□□□ -1.92
SMARCC1-202ENST00000425518 KRTAP9-8Q9BYQ0 159 aa3.03□□□□□ -1.92
SMARCC1-202ENST00000425518 KRTAP8-1Q8IUC2 63 aa2.98□□□□□ -1.93
SMARCC1-202ENST00000425518 KRTAP19-8Q3LI54 63 aa2.98□□□□□ -1.93
SMARCC1-202ENST00000425518 KRTAP10-5P60370 271 aa2.98□□□□□ -1.93
SMARCC1-202ENST00000425518 MT1BP07438 61 aa2.97□□□□□ -1.93
SMARCC1-202ENST00000425518 MT1XP80297 61 aa2.97□□□□□ -1.93
SMARCC1-202ENST00000425518 LCE2AQ5TA79 106 aaPredicted RBP2.96□□□□□ -1.94
SMARCC1-202ENST00000425518 KRTAP12-3P60328 96 aa2.96□□□□□ -1.94
SMARCC1-202ENST00000425518 KRTAP10-12P60413 245 aa2.95□□□□□ -1.94
SMARCC1-202ENST00000425518 KRTAP10-7P60409 375 aaPredicted RBP2.93□□□□□ -1.94
SMARCC1-202ENST00000425518 LCE2DQ5TA82 110 aaPredicted RBP2.9□□□□□ -1.94
SMARCC1-202ENST00000425518 KRTAP9-3Q9BYQ3 159 aa2.89□□□□□ -1.95
SMARCC1-202ENST00000425518 KRTAP9-2Q9BYQ4 174 aa2.89□□□□□ -1.95
SMARCC1-202ENST00000425518 PRO2289Q9P1D8 64 aa2.86□□□□□ -1.95
SMARCC1-202ENST00000425518 FSIP2Q5CZC0 6907 aa2.85□□□□□ -1.95
SMARCC1-202ENST00000425518 USH2AO75445 5202 aa2.84□□□□□ -1.95
SMARCC1-202ENST00000425518 KRTAP9-6A0A140TA67 174 aa2.83□□□□□ -1.96
SMARCC1-202ENST00000425518 KMT2DO14686 5537 aa2.82□□□□□ -1.96
SMARCC1-202ENST00000425518 KRTAP19-5Q3LI72 72 aa2.82□□□□□ -1.96
SMARCC1-202ENST00000425518 CRCT1Q9UGL9 99 aa2.81□□□□□ -1.96
SMARCC1-202ENST00000425518 INE1O15225 51 aa2.8□□□□□ -1.96
SMARCC1-202ENST00000425518 LCE2BO14633 110 aa2.79□□□□□ -1.96
SMARCC1-202ENST00000425518 KRTAP4-8A0A0G2JLE6 195 aa2.77□□□□□ -1.97
SMARCC1-202ENST00000425518 LCE3CQ5T5A8 94 aa2.77□□□□□ -1.97
SMARCC1-202ENST00000425518 KRTAP4-8Q9BYQ9 185 aa2.77□□□□□ -1.97
SMARCC1-202ENST00000425518 KRTAP9-6A8MVA2 160 aa2.69□□□□□ -1.98
SMARCC1-202ENST00000425518 KRTAP4-7Q9BYR0 210 aa2.69□□□□□ -1.98
SMARCC1-202ENST00000425518 SSPOA2VEC9 5147 aa2.68□□□□□ -1.98
SMARCC1-202ENST00000425518 KRTAP19-7Q3SYF9 63 aa2.64□□□□□ -1.99
SMARCC1-202ENST00000425518 KRTAP9-7A8MTY7 169 aa2.58□□□□□ -2
SMARCC1-202ENST00000425518 MT1LQ93083 61 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms