RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 FAM236CP0DP71 79 aa3.23□□□□□ -1.89
HMGB3-202ENST00000419110 IGKV2D-30A0A075B6S6 120 aa3.22□□□□□ -1.89
HMGB3-202ENST00000419110 H7BZZ5 65 aa3.22□□□□□ -1.89
HMGB3-202ENST00000419110 IGKV2-30P06310 120 aa3.22□□□□□ -1.89
HMGB3-202ENST00000419110 ATP11AUNQ6ZP68 121 aa3.22□□□□□ -1.89
HMGB3-202ENST00000419110 PCLOQ9Y6V0 5065 aa3.22□□□□□ -1.89
HMGB3-202ENST00000419110 CYSTM1Q9H1C7 97 aa3.21□□□□□ -1.9
HMGB3-202ENST00000419110 PCOTHQ58A44 107 aa3.2□□□□□ -1.9
HMGB3-202ENST00000419110 SPANXA2-OT1Q8N9U9 137 aa3.19□□□□□ -1.9
HMGB3-202ENST00000419110 CYP4F30PQ9H0H9 118 aa3.19□□□□□ -1.9
HMGB3-202ENST00000419110 SEC61BP60468 96 aaKnown RBP3.18□□□□□ -1.9
HMGB3-202ENST00000419110 HRES1P13985 223 aa3.14□□□□□ -1.91
HMGB3-202ENST00000419110 SPINK7P58062 85 aa3.14□□□□□ -1.91
HMGB3-202ENST00000419110 A8MUN3 132 aa3.13□□□□□ -1.91
HMGB3-202ENST00000419110 DMAC1Q96GE9 116 aa3.13□□□□□ -1.91
HMGB3-202ENST00000419110 SERP1Q9Y6X1 66 aa3.13□□□□□ -1.91
HMGB3-202ENST00000419110 LPAP08519 4548 aa3.11□□□□□ -1.91
HMGB3-202ENST00000419110 MUC17Q685J3 4493 aa3.1□□□□□ -1.91
HMGB3-202ENST00000419110 COA5Q86WW8 74 aa3.1□□□□□ -1.91
HMGB3-202ENST00000419110 HMCN2Q8NDA2 5059 aa3.09□□□□□ -1.91
HMGB3-202ENST00000419110 HERC1Q15751 4861 aa3.09□□□□□ -1.91
HMGB3-202ENST00000419110 CHKB-CPT1BH3BT56 60 aa3.09□□□□□ -1.91
HMGB3-202ENST00000419110 ACYP2P14621 99 aa3.09□□□□□ -1.91
HMGB3-202ENST00000419110 LRP2P98164 4655 aa3.09□□□□□ -1.91
HMGB3-202ENST00000419110 C4orf26Q17RF5 130 aa3.09□□□□□ -1.91
HMGB3-202ENST00000419110 COX6B2Q6YFQ2 88 aa3.09□□□□□ -1.91
HMGB3-202ENST00000419110 RBM12B-AS1Q9P1G2 102 aa3.09□□□□□ -1.91
HMGB3-202ENST00000419110 RPS28P62857 69 aaKnown RBP3.05□□□□□ -1.92
HMGB3-202ENST00000419110 SPTSSBQ8NFR3 76 aa3.05□□□□□ -1.92
HMGB3-202ENST00000419110 SMIM26A0A096LP01 95 aa3.03□□□□□ -1.92
HMGB3-202ENST00000419110 MPLKIPQ8TAP9 179 aa3.03□□□□□ -1.92
HMGB3-202ENST00000419110 S4R3F8 94 aa3.03□□□□□ -1.92
HMGB3-202ENST00000419110 H1FX-AS1Q4G0G2 97 aa3.01□□□□□ -1.93
HMGB3-202ENST00000419110 V9GYY9 64 aa3.01□□□□□ -1.93
HMGB3-202ENST00000419110 KRTAP4-1Q9BYQ7 146 aa2.99□□□□□ -1.93
HMGB3-202ENST00000419110 LCA10Q71F78 164 aa2.97□□□□□ -1.93
HMGB3-202ENST00000419110 PRR15LQ9BU68 103 aa2.97□□□□□ -1.93
HMGB3-202ENST00000419110 LCE1AQ5T7P2 110 aa2.96□□□□□ -1.94
HMGB3-202ENST00000419110 SEC61GP60059 68 aa2.95□□□□□ -1.94
HMGB3-202ENST00000419110 Q1T7F1 81 aa2.95□□□□□ -1.94
HMGB3-202ENST00000419110 A0A1B0GU69 56 aa2.94□□□□□ -1.94
HMGB3-202ENST00000419110 LINC01558Q9Y6Z2 57 aa2.94□□□□□ -1.94
HMGB3-202ENST00000419110 CSAG1Q6PB30 78 aa2.93□□□□□ -1.94
HMGB3-202ENST00000419110 RNF213Q63HN8 5207 aa2.92□□□□□ -1.94
HMGB3-202ENST00000419110 UBR4Q5T4S7 5183 aa2.92□□□□□ -1.94
HMGB3-202ENST00000419110 PSPHP1O15172 72 aa2.91□□□□□ -1.94
HMGB3-202ENST00000419110 FLGP20930 4061 aaPredicted RBP2.91□□□□□ -1.94
HMGB3-202ENST00000419110 KRTAP19-2Q3LHN2 52 aa2.9□□□□□ -1.95
HMGB3-202ENST00000419110 Q5VV11 94 aa2.88□□□□□ -1.95
HMGB3-202ENST00000419110 A6NED7 52 aa2.87□□□□□ -1.95
HMGB3-202ENST00000419110 H0YAA0 97 aa2.87□□□□□ -1.95
HMGB3-202ENST00000419110 M0R2T5 61 aa2.86□□□□□ -1.95
HMGB3-202ENST00000419110 ADM2Q7Z4H4 148 aa2.85□□□□□ -1.95
HMGB3-202ENST00000419110 UQCR11O14957 56 aa2.84□□□□□ -1.95
HMGB3-202ENST00000419110 MT1HP80294 61 aa2.84□□□□□ -1.95
HMGB3-202ENST00000419110 PRO0628Q9UI54 55 aa2.84□□□□□ -1.95
HMGB3-202ENST00000419110 MUC2Q02817 5179 aa2.84□□□□□ -1.96
HMGB3-202ENST00000419110 A0A1B0GU33 70 aa2.82□□□□□ -1.96
HMGB3-202ENST00000419110 KRTAP10-7P60409 375 aaPredicted RBP2.82□□□□□ -1.96
HMGB3-202ENST00000419110 BRK1Q8WUW1 75 aa2.81□□□□□ -1.96
HMGB3-202ENST00000419110 FAT4Q6V0I7 4981 aa2.81□□□□□ -1.96
HMGB3-202ENST00000419110 P0C880 135 aa2.8□□□□□ -1.96
HMGB3-202ENST00000419110 KRTAP10-6P60371 365 aaPredicted RBP2.8□□□□□ -1.96
HMGB3-202ENST00000419110 MIR22HGQ0VDD5 57 aa2.8□□□□□ -1.96
HMGB3-202ENST00000419110 CDC42SE1Q9NRR8 79 aa2.8□□□□□ -1.96
HMGB3-202ENST00000419110 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.79□□□□□ -1.96
HMGB3-202ENST00000419110 M0QZ58 72 aa2.78□□□□□ -1.96
HMGB3-202ENST00000419110 R4GN34 69 aa2.78□□□□□ -1.96
HMGB3-202ENST00000419110 KRTAP2-2Q9BYT5 123 aa2.77□□□□□ -1.97
HMGB3-202ENST00000419110 CRIPTQ9P021 101 aa2.77□□□□□ -1.97
HMGB3-202ENST00000419110 KRTAP5-11Q6L8G4 156 aa2.76□□□□□ -1.97
HMGB3-202ENST00000419110 SPATA8Q6RVD6 105 aa2.76□□□□□ -1.97
HMGB3-202ENST00000419110 K7ERS5 55 aa2.74□□□□□ -1.97
HMGB3-202ENST00000419110 KRTAP13-4Q3LI77 160 aa2.73□□□□□ -1.97
HMGB3-202ENST00000419110 A0A0D9SG42 100 aa2.72□□□□□ -1.97
HMGB3-202ENST00000419110 MT2AP02795 61 aa2.72□□□□□ -1.97
HMGB3-202ENST00000419110 KRTAP10-10P60014 251 aa2.72□□□□□ -1.97
HMGB3-202ENST00000419110 LINC01554Q52M75 96 aa2.72□□□□□ -1.97
HMGB3-202ENST00000419110 A8MU10 97 aa2.71□□□□□ -1.98
HMGB3-202ENST00000419110 MT1FP04733 61 aa2.7□□□□□ -1.98
HMGB3-202ENST00000419110 A6NN06 94 aa2.68□□□□□ -1.98
HMGB3-202ENST00000419110 PMAIP1Q13794 54 aa2.67□□□□□ -1.98
HMGB3-202ENST00000419110 SPRR2GQ9BYE4 73 aa2.67□□□□□ -1.98
HMGB3-202ENST00000419110 LCE1EQ5T753 118 aa2.66□□□□□ -1.98
HMGB3-202ENST00000419110 SPINT4Q6UDR6 99 aa2.66□□□□□ -1.98
HMGB3-202ENST00000419110 KRTAP12-1P59990 96 aa2.65□□□□□ -1.99
HMGB3-202ENST00000419110 KRTAP12-2P59991 146 aa2.63□□□□□ -1.99
HMGB3-202ENST00000419110 CAMK2N1Q7Z7J9 78 aa2.62□□□□□ -1.99
HMGB3-202ENST00000419110 PLAC4Q8WY50 150 aa2.61□□□□□ -1.99
HMGB3-202ENST00000419110 KRTAP19-8Q3LI54 63 aa2.6□□□□□ -1.99
HMGB3-202ENST00000419110 KTN1-AS1Q86SY8 53 aa2.58□□□□□ -2
HMGB3-202ENST00000419110 ROMO1P60602 79 aa2.56□□□□□ -2
HMGB3-202ENST00000419110 MT1BP07438 61 aa2.55□□□□□ -2
HMGB3-202ENST00000419110 MT3P25713 68 aa2.54□□□□□ -2
HMGB3-202ENST00000419110 PRO2289Q9P1D8 64 aa2.53□□□□□ -2
HMGB3-202ENST00000419110 KRTAP25-1Q3LHN0 102 aa2.49□□□□□ -2.01
HMGB3-202ENST00000419110 C10orf95Q9H7T3 257 aa2.48□□□□□ -2.01
HMGB3-202ENST00000419110 TNP1P09430 55 aa2.47□□□□□ -2.01
HMGB3-202ENST00000419110 MT1XP80297 61 aa2.47□□□□□ -2.01
HMGB3-202ENST00000419110 PRAC1Q96KF2 57 aa2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 120.8 ms