RNA–Protein interactions for RNA: ENST00000409161.5

SHANK2-203, Transcript of SH3 and multiple ankyrin repeat domains 2, humanhuman

TSL 1 (best) BASIC

Gene SHANK2, Length 9,208 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK2-203ENST00000409161 CMYA5Q8N3K9 4069 aa4.97□□□□□ -1.61
SHANK2-203ENST00000409161 LYSTQ99698 3801 aa4.97□□□□□ -1.61
SHANK2-203ENST00000409161 KRTAP19-4Q3LI73 84 aa4.93□□□□□ -1.62
SHANK2-203ENST00000409161 KRTAP10-4P60372 401 aaPredicted RBP4.91□□□□□ -1.62
SHANK2-203ENST00000409161 DNAH7Q8WXX0 4024 aa4.91□□□□□ -1.62
SHANK2-203ENST00000409161 DNAH3Q8TD57 4116 aa4.9□□□□□ -1.62
SHANK2-203ENST00000409161 ZNF469Q96JG9 3925 aaPredicted RBP4.84□□□□□ -1.64
SHANK2-203ENST00000409161 DNAH1Q9P2D7 4330 aa4.82□□□□□ -1.64
SHANK2-203ENST00000409161 DNAH2Q9P225 4427 aa4.81□□□□□ -1.64
SHANK2-203ENST00000409161 HUWE1Q7Z6Z7 4374 aaKnown RBP4.8□□□□□ -1.64
SHANK2-203ENST00000409161 HECTD4Q9Y4D8 3996 aa4.79□□□□□ -1.64
SHANK2-203ENST00000409161 LORP23490 312 aaPredicted RBP4.78□□□□□ -1.65
SHANK2-203ENST00000409161 ANK3Q12955 4377 aaKnown RBP4.77□□□□□ -1.65
SHANK2-203ENST00000409161 SPRR2GQ9BYE4 73 aa4.74□□□□□ -1.65
SHANK2-203ENST00000409161 KRTAP10-7P60409 375 aaPredicted RBP4.73□□□□□ -1.65
SHANK2-203ENST00000409161 ANK2Q01484 3957 aa4.71□□□□□ -1.66
SHANK2-203ENST00000409161 LCE3CQ5T5A8 94 aa4.71□□□□□ -1.66
SHANK2-203ENST00000409161 DNAH6Q9C0G6 4158 aa4.69□□□□□ -1.66
SHANK2-203ENST00000409161 VPS13BQ7Z7G8 4022 aa4.67□□□□□ -1.66
SHANK2-203ENST00000409161 KMT2AQ03164 3969 aa4.63□□□□□ -1.67
SHANK2-203ENST00000409161 KRTAP4-5Q9BYR2 181 aa4.62□□□□□ -1.67
SHANK2-203ENST00000409161 KRTAP19-5Q3LI72 72 aa4.57□□□□□ -1.68
SHANK2-203ENST00000409161 MT1HP80294 61 aa4.52□□□□□ -1.69
SHANK2-203ENST00000409161 FRAS1Q86XX4 4008 aa4.51□□□□□ -1.69
SHANK2-203ENST00000409161 SPRR2FQ96RM1 72 aa4.49□□□□□ -1.69
SHANK2-203ENST00000409161 MT2AP02795 61 aa4.47□□□□□ -1.69
SHANK2-203ENST00000409161 DNAH10Q8IVF4 4471 aa4.39□□□□□ -1.71
SHANK2-203ENST00000409161 FLGP20930 4061 aaPredicted RBP4.39□□□□□ -1.71
SHANK2-203ENST00000409161 KRTAP4-1Q9BYQ7 146 aa4.37□□□□□ -1.71
SHANK2-203ENST00000409161 PRKDCP78527 4128 aaKnown RBP4.35□□□□□ -1.71
SHANK2-203ENST00000409161 KRTAP12-4P60329 112 aa4.35□□□□□ -1.71
SHANK2-203ENST00000409161 FAT2Q9NYQ8 4349 aa4.33□□□□□ -1.72
SHANK2-203ENST00000409161 MT1FP04733 61 aa4.33□□□□□ -1.72
SHANK2-203ENST00000409161 LCE3BQ5TA77 95 aa4.3□□□□□ -1.72
SHANK2-203ENST00000409161 DYNC2H1Q8NCM8 4307 aaKnown RBP4.27□□□□□ -1.73
SHANK2-203ENST00000409161 DNAH9Q9NYC9 4486 aa4.26□□□□□ -1.73
SHANK2-203ENST00000409161 SPRR5A0A1B0GTR4 108 aa4.26□□□□□ -1.73
SHANK2-203ENST00000409161 DNAH11Q96DT5 4516 aa4.25□□□□□ -1.73
SHANK2-203ENST00000409161 KRTAP19-8Q3LI54 63 aa4.25□□□□□ -1.73
SHANK2-203ENST00000409161 MT3P25713 68 aa4.24□□□□□ -1.73
SHANK2-203ENST00000409161 VPS13DQ5THJ4 4388 aa4.24□□□□□ -1.73
SHANK2-203ENST00000409161 DNAH8Q96JB1 4490 aa4.22□□□□□ -1.73
SHANK2-203ENST00000409161 DNAH17Q9UFH2 4485 aa4.2□□□□□ -1.74
SHANK2-203ENST00000409161 LCE3DQ9BYE3 92 aa4.19□□□□□ -1.74
SHANK2-203ENST00000409161 SPRR2EP22531 72 aa4.19□□□□□ -1.74
SHANK2-203ENST00000409161 SPRR2BP35325 72 aa4.19□□□□□ -1.74
SHANK2-203ENST00000409161 SPRR2AP35326 72 aa4.19□□□□□ -1.74
SHANK2-203ENST00000409161 LCE2BO14633 110 aa4.15□□□□□ -1.75
SHANK2-203ENST00000409161 LCE3EQ5T5B0 92 aa4.14□□□□□ -1.75
SHANK2-203ENST00000409161 MT1XP80297 61 aa4.12□□□□□ -1.75
SHANK2-203ENST00000409161 MT1GP13640 62 aa4.12□□□□□ -1.75
SHANK2-203ENST00000409161 KRTAP19-1Q8IUB9 90 aa4.11□□□□□ -1.75
SHANK2-203ENST00000409161 SPRR2DP22532 72 aa4.09□□□□□ -1.75
SHANK2-203ENST00000409161 LRP1Q07954 4544 aaKnown RBP4.08□□□□□ -1.76
SHANK2-203ENST00000409161 DNAH5Q8TE73 4624 aa4.08□□□□□ -1.76
SHANK2-203ENST00000409161 STARD9Q9P2P6 4700 aa4.03□□□□□ -1.76
SHANK2-203ENST00000409161 PKHD1P08F94 4074 aa4.02□□□□□ -1.77
SHANK2-203ENST00000409161 PKHD1L1Q86WI1 4243 aa3.99□□□□□ -1.77
SHANK2-203ENST00000409161 PLECQ15149 4684 aaKnown RBP3.99□□□□□ -1.77
SHANK2-203ENST00000409161 MT1LQ93083 61 aa3.97□□□□□ -1.77
SHANK2-203ENST00000409161 MT1BP07438 61 aa3.9□□□□□ -1.78
SHANK2-203ENST00000409161 KRTAP19-3Q7Z4W3 81 aa3.89□□□□□ -1.79
SHANK2-203ENST00000409161 DYNC1H1Q14204 4646 aaKnown RBP3.87□□□□□ -1.79
SHANK2-203ENST00000409161 APOBP04114 4563 aaKnown RBP3.85□□□□□ -1.79
SHANK2-203ENST00000409161 LRP1BQ9NZR2 4599 aa3.85□□□□□ -1.79
SHANK2-203ENST00000409161 KRTAP9-8Q9BYQ0 159 aa3.85□□□□□ -1.79
SHANK2-203ENST00000409161 LCE2CQ5TA81 110 aa3.84□□□□□ -1.79
SHANK2-203ENST00000409161 PRM1P04553 51 aa3.81□□□□□ -1.8
SHANK2-203ENST00000409161 FAT1Q14517 4588 aa3.8□□□□□ -1.8
SHANK2-203ENST00000409161 HSPG2P98160 4391 aa3.78□□□□□ -1.8
SHANK2-203ENST00000409161 KRTAP9-3Q9BYQ3 159 aa3.78□□□□□ -1.8
SHANK2-203ENST00000409161 MT1EP04732 61 aa3.78□□□□□ -1.8
SHANK2-203ENST00000409161 KRTAP4-8A0A0G2JLE6 195 aa3.76□□□□□ -1.81
SHANK2-203ENST00000409161 KRTAP4-8Q9BYQ9 185 aa3.76□□□□□ -1.81
SHANK2-203ENST00000409161 PKD1P98161 4303 aa3.75□□□□□ -1.81
SHANK2-203ENST00000409161 SACSQ9NZJ4 4579 aa3.75□□□□□ -1.81
SHANK2-203ENST00000409161 LCE2DQ5TA82 110 aaPredicted RBP3.73□□□□□ -1.81
SHANK2-203ENST00000409161 TNXBP22105 4242 aa3.7□□□□□ -1.82
SHANK2-203ENST00000409161 MT1MQ8N339 61 aa3.65□□□□□ -1.82
SHANK2-203ENST00000409161 FAT3Q8TDW7 4589 aa3.59□□□□□ -1.84
SHANK2-203ENST00000409161 MYCBP2O75592 4640 aa3.55□□□□□ -1.84
SHANK2-203ENST00000409161 KRTAP4-7Q9BYR0 210 aa3.55□□□□□ -1.84
SHANK2-203ENST00000409161 LCE1DQ5T752 114 aa3.55□□□□□ -1.84
SHANK2-203ENST00000409161 MT4P47944 62 aa3.53□□□□□ -1.85
SHANK2-203ENST00000409161 LCE1BQ5T7P3 118 aa3.53□□□□□ -1.85
SHANK2-203ENST00000409161 MT1AP04731 61 aa3.51□□□□□ -1.85
SHANK2-203ENST00000409161 KRTAP2-3P0C7H8 128 aa3.51□□□□□ -1.85
SHANK2-203ENST00000409161 KRTAP2-4Q9BYR9 128 aa3.51□□□□□ -1.85
SHANK2-203ENST00000409161 KRTAP2-1Q9BYU5 128 aa3.51□□□□□ -1.85
SHANK2-203ENST00000409161 KRTAP19-6Q3LI70 58 aa3.47□□□□□ -1.85
SHANK2-203ENST00000409161 LOC100996750A0A140TA64 210 aa3.43□□□□□ -1.86
SHANK2-203ENST00000409161 RYR1P21817 5038 aa3.4□□□□□ -1.86
SHANK2-203ENST00000409161 DNHD1Q96M86 4753 aa3.39□□□□□ -1.87
SHANK2-203ENST00000409161 KRTAP19-2Q3LHN2 52 aa3.35□□□□□ -1.87
SHANK2-203ENST00000409161 RYR3Q15413 4870 aa3.34□□□□□ -1.88
SHANK2-203ENST00000409161 KRTAP17-1Q9BYP8 105 aa3.32□□□□□ -1.88
SHANK2-203ENST00000409161 MUC17Q685J3 4493 aa3.31□□□□□ -1.88
SHANK2-203ENST00000409161 LCE5AQ5TCM9 118 aa3.31□□□□□ -1.88
SHANK2-203ENST00000409161 KRTAP19-7Q3SYF9 63 aa3.29□□□□□ -1.88
SHANK2-203ENST00000409161 LRP2P98164 4655 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms