RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 PKHD1L1Q86WI1 4243 aa4.65□□□□□ -1.67
LIMS1-203ENST00000393310 PLAC4Q8WY50 150 aa4.64□□□□□ -1.67
LIMS1-203ENST00000393310 A0A0D9SG42 100 aa4.63□□□□□ -1.67
LIMS1-203ENST00000393310 R4GN34 69 aa4.63□□□□□ -1.67
LIMS1-203ENST00000393310 BIRC6Q9NR09 4857 aa4.63□□□□□ -1.67
LIMS1-203ENST00000393310 MEGF8Q7Z7M0 2845 aa4.61□□□□□ -1.67
LIMS1-203ENST00000393310 DNAH5Q8TE73 4624 aa4.6□□□□□ -1.67
LIMS1-203ENST00000393310 LINC00472Q9H8W2 130 aa4.58□□□□□ -1.68
LIMS1-203ENST00000393310 MMP24-AS1A0A0U1RRL7 71 aa4.58□□□□□ -1.68
LIMS1-203ENST00000393310 LCE2BO14633 110 aa4.57□□□□□ -1.68
LIMS1-203ENST00000393310 H1FX-AS1Q4G0G2 97 aa4.56□□□□□ -1.68
LIMS1-203ENST00000393310 LCE2AQ5TA79 106 aaPredicted RBP4.53□□□□□ -1.68
LIMS1-203ENST00000393310 MT1HL1P0DM35 61 aa4.51□□□□□ -1.69
LIMS1-203ENST00000393310 PP632Q6XCG6 107 aa4.51□□□□□ -1.69
LIMS1-203ENST00000393310 KMT2CQ8NEZ4 4911 aaKnown RBP4.5□□□□□ -1.69
LIMS1-203ENST00000393310 SPRR1BP22528 89 aa4.49□□□□□ -1.69
LIMS1-203ENST00000393310 RYR3Q15413 4870 aa4.48□□□□□ -1.69
LIMS1-203ENST00000393310 PRO2289Q9P1D8 64 aa4.46□□□□□ -1.69
LIMS1-203ENST00000393310 TNXBP22105 4242 aa4.46□□□□□ -1.7
LIMS1-203ENST00000393310 LPAP08519 4548 aa4.45□□□□□ -1.7
LIMS1-203ENST00000393310 SPRR1AP35321 89 aa4.44□□□□□ -1.7
LIMS1-203ENST00000393310 KRTAP1-4P0C5Y4 121 aa4.44□□□□□ -1.7
LIMS1-203ENST00000393310 XP32Q5T750 250 aa4.44□□□□□ -1.7
LIMS1-203ENST00000393310 KRTAP10-10P60014 251 aa4.44□□□□□ -1.7
LIMS1-203ENST00000393310 KRTAP13-3Q3SY46 172 aa4.44□□□□□ -1.7
LIMS1-203ENST00000393310 KRTAP13-2Q52LG2 175 aa4.42□□□□□ -1.7
LIMS1-203ENST00000393310 KRTAP9-6A0A140TA67 174 aa4.41□□□□□ -1.7
LIMS1-203ENST00000393310 KRTAP15-1Q3LI76 137 aa4.39□□□□□ -1.71
LIMS1-203ENST00000393310 C10orf95Q9H7T3 257 aa4.37□□□□□ -1.71
LIMS1-203ENST00000393310 HSPG2P98160 4391 aa4.35□□□□□ -1.71
LIMS1-203ENST00000393310 KRTAP13-1Q8IUC0 172 aa4.33□□□□□ -1.72
LIMS1-203ENST00000393310 INE1O15225 51 aa4.32□□□□□ -1.72
LIMS1-203ENST00000393310 KRTAP10-4P60372 401 aaPredicted RBP4.3□□□□□ -1.72
LIMS1-203ENST00000393310 RYR2Q92736 4967 aa4.3□□□□□ -1.72
LIMS1-203ENST00000393310 H0YAA0 97 aa4.3□□□□□ -1.72
LIMS1-203ENST00000393310 KRTAP9-2Q9BYQ4 174 aa4.3□□□□□ -1.72
LIMS1-203ENST00000393310 LORP23490 312 aaPredicted RBP4.28□□□□□ -1.73
LIMS1-203ENST00000393310 CRCT1Q9UGL9 99 aa4.27□□□□□ -1.73
LIMS1-203ENST00000393310 S4R3F8 94 aa4.27□□□□□ -1.73
LIMS1-203ENST00000393310 LRP1BQ9NZR2 4599 aa4.27□□□□□ -1.73
LIMS1-203ENST00000393310 APOBP04114 4563 aaKnown RBP4.23□□□□□ -1.73
LIMS1-203ENST00000393310 KRTAP3-1Q9BYR8 98 aa4.22□□□□□ -1.73
LIMS1-203ENST00000393310 ABCA13Q86UQ4 5058 aa4.22□□□□□ -1.73
LIMS1-203ENST00000393310 DYNC1H1Q14204 4646 aaKnown RBP4.22□□□□□ -1.73
LIMS1-203ENST00000393310 RYR1P21817 5038 aa4.2□□□□□ -1.74
LIMS1-203ENST00000393310 HERC2O95714 4834 aa4.19□□□□□ -1.74
LIMS1-203ENST00000393310 PCLOQ9Y6V0 5065 aa4.17□□□□□ -1.74
LIMS1-203ENST00000393310 KRTAP7-1Q8IUC3 87 aa4.13□□□□□ -1.75
LIMS1-203ENST00000393310 EPPK1P58107 5090 aaKnown RBP4.12□□□□□ -1.75
LIMS1-203ENST00000393310 KIAA1109Q2LD37 5005 aa4.05□□□□□ -1.76
LIMS1-203ENST00000393310 M0QZ58 72 aa4.05□□□□□ -1.76
LIMS1-203ENST00000393310 FAT1Q14517 4588 aa4.03□□□□□ -1.76
LIMS1-203ENST00000393310 KRTAP10-6P60371 365 aaPredicted RBP4□□□□□ -1.77
LIMS1-203ENST00000393310 FLGP20930 4061 aaPredicted RBP3.99□□□□□ -1.77
LIMS1-203ENST00000393310 MUC2Q02817 5179 aa3.99□□□□□ -1.77
LIMS1-203ENST00000393310 KRTAP9-7A8MTY7 169 aa3.97□□□□□ -1.77
LIMS1-203ENST00000393310 LRP1Q07954 4544 aaKnown RBP3.93□□□□□ -1.78
LIMS1-203ENST00000393310 MT1HP80294 61 aa3.92□□□□□ -1.78
LIMS1-203ENST00000393310 TNP1P09430 55 aa3.88□□□□□ -1.79
LIMS1-203ENST00000393310 KRTAP12-2P59991 146 aa3.87□□□□□ -1.79
LIMS1-203ENST00000393310 MUC17Q685J3 4493 aa3.85□□□□□ -1.79
LIMS1-203ENST00000393310 HERC1Q15751 4861 aa3.79□□□□□ -1.8
LIMS1-203ENST00000393310 KRTAP20-1Q3LI63 56 aa3.77□□□□□ -1.81
LIMS1-203ENST00000393310 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.73□□□□□ -1.81
LIMS1-203ENST00000393310 KRTAP12-1P59990 96 aa3.71□□□□□ -1.82
LIMS1-203ENST00000393310 KRTAP8-1Q8IUC2 63 aa3.71□□□□□ -1.82
LIMS1-203ENST00000393310 KRTAP13-4Q3LI77 160 aa3.68□□□□□ -1.82
LIMS1-203ENST00000393310 KRTAP6-3Q3LI67 103 aa3.68□□□□□ -1.82
LIMS1-203ENST00000393310 MT2AP02795 61 aa3.67□□□□□ -1.82
LIMS1-203ENST00000393310 KRTAP19-1Q8IUB9 90 aa3.67□□□□□ -1.82
LIMS1-203ENST00000393310 KRTAP4-1Q9BYQ7 146 aa3.65□□□□□ -1.83
LIMS1-203ENST00000393310 LRP2P98164 4655 aa3.64□□□□□ -1.83
LIMS1-203ENST00000393310 SPRR2EP22531 72 aa3.62□□□□□ -1.83
LIMS1-203ENST00000393310 SPRR2BP35325 72 aa3.62□□□□□ -1.83
LIMS1-203ENST00000393310 SPRR2AP35326 72 aa3.62□□□□□ -1.83
LIMS1-203ENST00000393310 SPRR2FQ96RM1 72 aa3.61□□□□□ -1.83
LIMS1-203ENST00000393310 UBR4Q5T4S7 5183 aa3.6□□□□□ -1.83
LIMS1-203ENST00000393310 KRTAP2-3P0C7H8 128 aa3.58□□□□□ -1.84
LIMS1-203ENST00000393310 KRTAP2-4Q9BYR9 128 aa3.58□□□□□ -1.84
LIMS1-203ENST00000393310 FAT4Q6V0I7 4981 aa3.58□□□□□ -1.84
LIMS1-203ENST00000393310 SPRR2DP22532 72 aa3.55□□□□□ -1.84
LIMS1-203ENST00000393310 KRTAP19-6Q3LI70 58 aa3.53□□□□□ -1.84
LIMS1-203ENST00000393310 MT1FP04733 61 aa3.52□□□□□ -1.85
LIMS1-203ENST00000393310 RNF213Q63HN8 5207 aa3.48□□□□□ -1.85
LIMS1-203ENST00000393310 KRTAP19-4Q3LI73 84 aa3.47□□□□□ -1.85
LIMS1-203ENST00000393310 HMCN2Q8NDA2 5059 aa3.45□□□□□ -1.86
LIMS1-203ENST00000393310 KRTAP9-8Q9BYQ0 159 aa3.43□□□□□ -1.86
LIMS1-203ENST00000393310 KRTAP2-2Q9BYT5 123 aa3.42□□□□□ -1.86
LIMS1-203ENST00000393310 KRTAP2-1Q9BYU5 128 aa3.42□□□□□ -1.86
LIMS1-203ENST00000393310 KRTAP10-5P60370 271 aa3.41□□□□□ -1.86
LIMS1-203ENST00000393310 KRTAP9-3Q9BYQ3 159 aa3.4□□□□□ -1.87
LIMS1-203ENST00000393310 SPRR2GQ9BYE4 73 aa3.37□□□□□ -1.87
LIMS1-203ENST00000393310 KRTAP10-7P60409 375 aaPredicted RBP3.35□□□□□ -1.87
LIMS1-203ENST00000393310 FSIP2Q5CZC0 6907 aa3.35□□□□□ -1.87
LIMS1-203ENST00000393310 KRTAP19-8Q3LI54 63 aa3.33□□□□□ -1.88
LIMS1-203ENST00000393310 KRTAP10-12P60413 245 aa3.32□□□□□ -1.88
LIMS1-203ENST00000393310 LCE5AQ5TCM9 118 aa3.3□□□□□ -1.88
LIMS1-203ENST00000393310 KRTAP9-4Q9BYQ2 154 aa3.28□□□□□ -1.88
LIMS1-203ENST00000393310 LCE3BQ5TA77 95 aa3.28□□□□□ -1.89
LIMS1-203ENST00000393310 LCE1AQ5T7P2 110 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms