RNA–Protein interactions for RNA: ENST00000379016.7

HIPK3-202, Transcript of homeodomain interacting protein kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HIPK3, Length 7,345 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3-202ENST00000379016 ANK3Q12955 4377 aaKnown RBP5.38□□□□□ -1.55
HIPK3-202ENST00000379016 KRTAP10-4P60372 401 aaPredicted RBP5.34□□□□□ -1.55
HIPK3-202ENST00000379016 VPS13CQ709C8 3753 aa5.28□□□□□ -1.56
HIPK3-202ENST00000379016 HUWE1Q7Z6Z7 4374 aaKnown RBP5.28□□□□□ -1.56
HIPK3-202ENST00000379016 LCE3BQ5TA77 95 aa5.16□□□□□ -1.58
HIPK3-202ENST00000379016 SPRR2EP22531 72 aa5.13□□□□□ -1.59
HIPK3-202ENST00000379016 SPRR2BP35325 72 aa5.13□□□□□ -1.59
HIPK3-202ENST00000379016 SPRR2AP35326 72 aa5.13□□□□□ -1.59
HIPK3-202ENST00000379016 KRTAP19-5Q3LI72 72 aa5.13□□□□□ -1.59
HIPK3-202ENST00000379016 KRTAP4-1Q9BYQ7 146 aa5.05□□□□□ -1.6
HIPK3-202ENST00000379016 ALMS1Q8TCU4 4167 aa5.05□□□□□ -1.6
HIPK3-202ENST00000379016 MT1HP80294 61 aa5.05□□□□□ -1.6
HIPK3-202ENST00000379016 LCE3CQ5T5A8 94 aa5.04□□□□□ -1.6
HIPK3-202ENST00000379016 BSNQ9UPA5 3926 aa4.97□□□□□ -1.61
HIPK3-202ENST00000379016 SPRR2DP22532 72 aa4.95□□□□□ -1.62
HIPK3-202ENST00000379016 MT2AP02795 61 aa4.91□□□□□ -1.62
HIPK3-202ENST00000379016 KRTAP12-4P60329 112 aa4.89□□□□□ -1.63
HIPK3-202ENST00000379016 LCE2BO14633 110 aa4.86□□□□□ -1.63
HIPK3-202ENST00000379016 MT1FP04733 61 aa4.86□□□□□ -1.63
HIPK3-202ENST00000379016 AKAP9Q99996 3911 aa4.86□□□□□ -1.63
HIPK3-202ENST00000379016 MT1GP13640 62 aa4.82□□□□□ -1.64
HIPK3-202ENST00000379016 DNAH2Q9P225 4427 aa4.78□□□□□ -1.64
HIPK3-202ENST00000379016 DNAH1Q9P2D7 4330 aa4.76□□□□□ -1.65
HIPK3-202ENST00000379016 DNAH9Q9NYC9 4486 aa4.74□□□□□ -1.65
HIPK3-202ENST00000379016 SPRR2GQ9BYE4 73 aa4.72□□□□□ -1.65
HIPK3-202ENST00000379016 ZNF469Q96JG9 3925 aaPredicted RBP4.72□□□□□ -1.65
HIPK3-202ENST00000379016 DNAH5Q8TE73 4624 aa4.71□□□□□ -1.65
HIPK3-202ENST00000379016 SPRR5A0A1B0GTR4 108 aa4.71□□□□□ -1.66
HIPK3-202ENST00000379016 LCE3EQ5T5B0 92 aa4.7□□□□□ -1.66
HIPK3-202ENST00000379016 LCE3DQ9BYE3 92 aa4.7□□□□□ -1.66
HIPK3-202ENST00000379016 LCE2CQ5TA81 110 aa4.68□□□□□ -1.66
HIPK3-202ENST00000379016 DNAH10Q8IVF4 4471 aa4.68□□□□□ -1.66
HIPK3-202ENST00000379016 FAT1Q14517 4588 aa4.65□□□□□ -1.66
HIPK3-202ENST00000379016 VPS13BQ7Z7G8 4022 aa4.64□□□□□ -1.67
HIPK3-202ENST00000379016 DNAH8Q96JB1 4490 aa4.63□□□□□ -1.67
HIPK3-202ENST00000379016 ANK2Q01484 3957 aa4.62□□□□□ -1.67
HIPK3-202ENST00000379016 LCE2DQ5TA82 110 aaPredicted RBP4.61□□□□□ -1.67
HIPK3-202ENST00000379016 PLECQ15149 4684 aaKnown RBP4.6□□□□□ -1.67
HIPK3-202ENST00000379016 FRAS1Q86XX4 4008 aa4.58□□□□□ -1.68
HIPK3-202ENST00000379016 KRTAP4-8A0A0G2JLE6 195 aa4.56□□□□□ -1.68
HIPK3-202ENST00000379016 KRTAP4-8Q9BYQ9 185 aa4.56□□□□□ -1.68
HIPK3-202ENST00000379016 DNAH17Q9UFH2 4485 aa4.56□□□□□ -1.68
HIPK3-202ENST00000379016 DNAH11Q96DT5 4516 aa4.56□□□□□ -1.68
HIPK3-202ENST00000379016 MT4P47944 62 aa4.55□□□□□ -1.68
HIPK3-202ENST00000379016 LCE1BQ5T7P3 118 aa4.54□□□□□ -1.68
HIPK3-202ENST00000379016 FAT2Q9NYQ8 4349 aa4.52□□□□□ -1.69
HIPK3-202ENST00000379016 KMT2AQ03164 3969 aa4.5□□□□□ -1.69
HIPK3-202ENST00000379016 LYSTQ99698 3801 aa4.47□□□□□ -1.69
HIPK3-202ENST00000379016 KRTAP19-4Q3LI73 84 aa4.46□□□□□ -1.69
HIPK3-202ENST00000379016 LRP1BQ9NZR2 4599 aa4.45□□□□□ -1.7
HIPK3-202ENST00000379016 CMYA5Q8N3K9 4069 aa4.45□□□□□ -1.7
HIPK3-202ENST00000379016 LCE1DQ5T752 114 aa4.43□□□□□ -1.7
HIPK3-202ENST00000379016 DNAH3Q8TD57 4116 aa4.42□□□□□ -1.7
HIPK3-202ENST00000379016 SACSQ9NZJ4 4579 aa4.41□□□□□ -1.7
HIPK3-202ENST00000379016 PRM1P04553 51 aa4.41□□□□□ -1.7
HIPK3-202ENST00000379016 DNAH7Q8WXX0 4024 aa4.41□□□□□ -1.7
HIPK3-202ENST00000379016 KRTAP19-1Q8IUB9 90 aa4.39□□□□□ -1.71
HIPK3-202ENST00000379016 STARD9Q9P2P6 4700 aa4.37□□□□□ -1.71
HIPK3-202ENST00000379016 KRTAP4-7Q9BYR0 210 aa4.37□□□□□ -1.71
HIPK3-202ENST00000379016 RYR1P21817 5038 aa4.34□□□□□ -1.71
HIPK3-202ENST00000379016 APOBP04114 4563 aaKnown RBP4.34□□□□□ -1.72
HIPK3-202ENST00000379016 MT1XP80297 61 aa4.33□□□□□ -1.72
HIPK3-202ENST00000379016 DNAH6Q9C0G6 4158 aa4.33□□□□□ -1.72
HIPK3-202ENST00000379016 DYNC1H1Q14204 4646 aaKnown RBP4.3□□□□□ -1.72
HIPK3-202ENST00000379016 PRKDCP78527 4128 aaKnown RBP4.3□□□□□ -1.72
HIPK3-202ENST00000379016 LCE5AQ5TCM9 118 aa4.28□□□□□ -1.72
HIPK3-202ENST00000379016 DYNC2H1Q8NCM8 4307 aaKnown RBP4.27□□□□□ -1.73
HIPK3-202ENST00000379016 VPS13DQ5THJ4 4388 aa4.27□□□□□ -1.73
HIPK3-202ENST00000379016 KRTAP17-1Q9BYP8 105 aa4.26□□□□□ -1.73
HIPK3-202ENST00000379016 DNHD1Q96M86 4753 aa4.25□□□□□ -1.73
HIPK3-202ENST00000379016 FAT3Q8TDW7 4589 aa4.21□□□□□ -1.74
HIPK3-202ENST00000379016 MT1BP07438 61 aa4.2□□□□□ -1.74
HIPK3-202ENST00000379016 LPAP08519 4548 aa4.2□□□□□ -1.74
HIPK3-202ENST00000379016 LOC100996750A0A140TA64 210 aa4.19□□□□□ -1.74
HIPK3-202ENST00000379016 MT3P25713 68 aa4.18□□□□□ -1.74
HIPK3-202ENST00000379016 KRTAP19-8Q3LI54 63 aa4.15□□□□□ -1.74
HIPK3-202ENST00000379016 LCE1CQ5T751 118 aa4.15□□□□□ -1.75
HIPK3-202ENST00000379016 LCE1EQ5T753 118 aa4.15□□□□□ -1.75
HIPK3-202ENST00000379016 LCE1FQ5T754 118 aa4.15□□□□□ -1.75
HIPK3-202ENST00000379016 LCE1AQ5T7P2 110 aa4.15□□□□□ -1.75
HIPK3-202ENST00000379016 MYCBP2O75592 4640 aa4.15□□□□□ -1.75
HIPK3-202ENST00000379016 KRTAP19-3Q7Z4W3 81 aa4.14□□□□□ -1.75
HIPK3-202ENST00000379016 KRTAP9-8Q9BYQ0 159 aa4.13□□□□□ -1.75
HIPK3-202ENST00000379016 FLGP20930 4061 aaPredicted RBP4.12□□□□□ -1.75
HIPK3-202ENST00000379016 KRTAP4-3Q9BYR4 195 aa4.11□□□□□ -1.75
HIPK3-202ENST00000379016 HECTD4Q9Y4D8 3996 aa4.04□□□□□ -1.76
HIPK3-202ENST00000379016 KRTAP9-3Q9BYQ3 159 aa4.04□□□□□ -1.76
HIPK3-202ENST00000379016 LRP1Q07954 4544 aaKnown RBP4.04□□□□□ -1.76
HIPK3-202ENST00000379016 RYR3Q15413 4870 aa4.03□□□□□ -1.77
HIPK3-202ENST00000379016 MT1LQ93083 61 aa4.02□□□□□ -1.77
HIPK3-202ENST00000379016 KRTAP9-2Q9BYQ4 174 aa4□□□□□ -1.77
HIPK3-202ENST00000379016 KRTAP4-9Q9BYQ8 210 aa3.99□□□□□ -1.77
HIPK3-202ENST00000379016 PKD1P98161 4303 aa3.97□□□□□ -1.77
HIPK3-202ENST00000379016 LCE4AQ5TA78 99 aa3.96□□□□□ -1.77
HIPK3-202ENST00000379016 SYNE2Q8WXH0 6885 aaKnown RBP3.95□□□□□ -1.78
HIPK3-202ENST00000379016 PKHD1P08F94 4074 aa3.95□□□□□ -1.78
HIPK3-202ENST00000379016 MT1EP04732 61 aa3.91□□□□□ -1.78
HIPK3-202ENST00000379016 HSPG2P98160 4391 aa3.9□□□□□ -1.79
HIPK3-202ENST00000379016 PKHD1L1Q86WI1 4243 aa3.88□□□□□ -1.79
HIPK3-202ENST00000379016 KRTAP19-6Q3LI70 58 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 106.2 ms