RNA–Protein interactions for RNA: ENST00000373019.4

SF3A3-201, Transcript of splicing factor 3a subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A3, Length 3,673 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-201ENST00000373019 LRP1BQ9NZR2 4599 aa5.04□□□□□ -1.6
SF3A3-201ENST00000373019 KRTAP10-6P60371 365 aaPredicted RBP5.03□□□□□ -1.6
SF3A3-201ENST00000373019 PKHD1P08F94 4074 aa5.02□□□□□ -1.61
SF3A3-201ENST00000373019 FAT1Q14517 4588 aa5.02□□□□□ -1.61
SF3A3-201ENST00000373019 DNAH5Q8TE73 4624 aa5.01□□□□□ -1.61
SF3A3-201ENST00000373019 Q5VSD8 79 aa5.01□□□□□ -1.61
SF3A3-201ENST00000373019 DYNC1H1Q14204 4646 aaKnown RBP5□□□□□ -1.61
SF3A3-201ENST00000373019 A0A0D9SG42 100 aa5□□□□□ -1.61
SF3A3-201ENST00000373019 KRTAP4-5Q9BYR2 181 aa4.99□□□□□ -1.61
SF3A3-201ENST00000373019 VPS13BQ7Z7G8 4022 aa4.99□□□□□ -1.61
SF3A3-201ENST00000373019 KRTAP1-4P0C5Y4 121 aa4.99□□□□□ -1.61
SF3A3-201ENST00000373019 BIRC6Q9NR09 4857 aa4.98□□□□□ -1.61
SF3A3-201ENST00000373019 RYR1P21817 5038 aa4.96□□□□□ -1.62
SF3A3-201ENST00000373019 KRTAP3-2Q9BYR7 98 aa4.95□□□□□ -1.62
SF3A3-201ENST00000373019 FAT2Q9NYQ8 4349 aa4.95□□□□□ -1.62
SF3A3-201ENST00000373019 KRTAP12-2P59991 146 aa4.92□□□□□ -1.62
SF3A3-201ENST00000373019 KRTAP3-3Q9BYR6 98 aa4.92□□□□□ -1.62
SF3A3-201ENST00000373019 S4R3F8 94 aa4.92□□□□□ -1.62
SF3A3-201ENST00000373019 XP32Q5T750 250 aa4.9□□□□□ -1.63
SF3A3-201ENST00000373019 HERC2O95714 4834 aa4.89□□□□□ -1.63
SF3A3-201ENST00000373019 C9orf92A6NGG3 77 aa4.88□□□□□ -1.63
SF3A3-201ENST00000373019 APOBP04114 4563 aaKnown RBP4.88□□□□□ -1.63
SF3A3-201ENST00000373019 KRTAP17-1Q9BYP8 105 aa4.87□□□□□ -1.63
SF3A3-201ENST00000373019 PKD1P98161 4303 aa4.86□□□□□ -1.63
SF3A3-201ENST00000373019 ABCA13Q86UQ4 5058 aa4.84□□□□□ -1.63
SF3A3-201ENST00000373019 MYCBP2O75592 4640 aa4.83□□□□□ -1.64
SF3A3-201ENST00000373019 KRTAP12-1P59990 96 aa4.83□□□□□ -1.64
SF3A3-201ENST00000373019 SEC61BP60468 96 aaKnown RBP4.83□□□□□ -1.64
SF3A3-201ENST00000373019 PCLOQ9Y6V0 5065 aa4.8□□□□□ -1.64
SF3A3-201ENST00000373019 RPS29P62273 56 aaKnown RBP4.79□□□□□ -1.64
SF3A3-201ENST00000373019 HSPG2P98160 4391 aa4.78□□□□□ -1.64
SF3A3-201ENST00000373019 LRP1Q07954 4544 aaKnown RBP4.77□□□□□ -1.65
SF3A3-201ENST00000373019 PKHD1L1Q86WI1 4243 aa4.76□□□□□ -1.65
SF3A3-201ENST00000373019 PLAC4Q8WY50 150 aa4.75□□□□□ -1.65
SF3A3-201ENST00000373019 HERC1Q15751 4861 aa4.74□□□□□ -1.65
SF3A3-201ENST00000373019 KRTAP10-4P60372 401 aaPredicted RBP4.71□□□□□ -1.65
SF3A3-201ENST00000373019 FAT3Q8TDW7 4589 aa4.71□□□□□ -1.65
SF3A3-201ENST00000373019 KRTAP10-8P60410 259 aa4.68□□□□□ -1.66
SF3A3-201ENST00000373019 MT1HL1P0DM35 61 aa4.6□□□□□ -1.67
SF3A3-201ENST00000373019 M0QZ58 72 aa4.59□□□□□ -1.67
SF3A3-201ENST00000373019 TNXBP22105 4242 aa4.58□□□□□ -1.68
SF3A3-201ENST00000373019 LRP2P98164 4655 aa4.57□□□□□ -1.68
SF3A3-201ENST00000373019 UBR4Q5T4S7 5183 aa4.56□□□□□ -1.68
SF3A3-201ENST00000373019 LPAP08519 4548 aa4.54□□□□□ -1.68
SF3A3-201ENST00000373019 RNF213Q63HN8 5207 aa4.52□□□□□ -1.69
SF3A3-201ENST00000373019 PP632Q6XCG6 107 aa4.41□□□□□ -1.7
SF3A3-201ENST00000373019 SPRR5A0A1B0GTR4 108 aa4.4□□□□□ -1.71
SF3A3-201ENST00000373019 R4GN34 69 aa4.39□□□□□ -1.71
SF3A3-201ENST00000373019 CAMK2N1Q7Z7J9 78 aa4.37□□□□□ -1.71
SF3A3-201ENST00000373019 MUC2Q02817 5179 aa4.37□□□□□ -1.71
SF3A3-201ENST00000373019 HMCN2Q8NDA2 5059 aa4.37□□□□□ -1.71
SF3A3-201ENST00000373019 LORP23490 312 aaPredicted RBP4.36□□□□□ -1.71
SF3A3-201ENST00000373019 PRO2289Q9P1D8 64 aa4.35□□□□□ -1.71
SF3A3-201ENST00000373019 LCE2DQ5TA82 110 aaPredicted RBP4.29□□□□□ -1.72
SF3A3-201ENST00000373019 M0R2T5 61 aa4.28□□□□□ -1.72
SF3A3-201ENST00000373019 FAT4Q6V0I7 4981 aa4.23□□□□□ -1.73
SF3A3-201ENST00000373019 FSIP2Q5CZC0 6907 aa4.21□□□□□ -1.73
SF3A3-201ENST00000373019 KRTAP23-1A1A580 65 aa4.16□□□□□ -1.74
SF3A3-201ENST00000373019 INE1O15225 51 aa4.16□□□□□ -1.74
SF3A3-201ENST00000373019 KRTAP4-1Q9BYQ7 146 aa4.14□□□□□ -1.75
SF3A3-201ENST00000373019 MUC17Q685J3 4493 aa4.12□□□□□ -1.75
SF3A3-201ENST00000373019 TNP1P09430 55 aa4.11□□□□□ -1.75
SF3A3-201ENST00000373019 LCE2CQ5TA81 110 aa4.05□□□□□ -1.76
SF3A3-201ENST00000373019 LCE2BO14633 110 aa4.02□□□□□ -1.77
SF3A3-201ENST00000373019 FLGP20930 4061 aaPredicted RBP3.97□□□□□ -1.77
SF3A3-201ENST00000373019 KRTAP19-2Q3LHN2 52 aa3.96□□□□□ -1.78
SF3A3-201ENST00000373019 LCE3AQ5TA76 89 aa3.91□□□□□ -1.78
SF3A3-201ENST00000373019 MT1HP80294 61 aa3.9□□□□□ -1.78
SF3A3-201ENST00000373019 KRTAP10-10P60014 251 aa3.9□□□□□ -1.79
SF3A3-201ENST00000373019 LCE2AQ5TA79 106 aaPredicted RBP3.87□□□□□ -1.79
SF3A3-201ENST00000373019 USH2AO75445 5202 aa3.8□□□□□ -1.8
SF3A3-201ENST00000373019 KRTAP8-1Q8IUC2 63 aa3.79□□□□□ -1.8
SF3A3-201ENST00000373019 KRTAP10-12P60413 245 aa3.79□□□□□ -1.8
SF3A3-201ENST00000373019 KRTAP9-2Q9BYQ4 174 aa3.78□□□□□ -1.8
SF3A3-201ENST00000373019 SPRR2GQ9BYE4 73 aa3.71□□□□□ -1.82
SF3A3-201ENST00000373019 KRTAP19-1Q8IUB9 90 aa3.7□□□□□ -1.82
SF3A3-201ENST00000373019 MT2AP02795 61 aa3.7□□□□□ -1.82
SF3A3-201ENST00000373019 MT1FP04733 61 aa3.68□□□□□ -1.82
SF3A3-201ENST00000373019 KRTAP9-8Q9BYQ0 159 aa3.67□□□□□ -1.82
SF3A3-201ENST00000373019 KRTAP12-3P60328 96 aa3.67□□□□□ -1.82
SF3A3-201ENST00000373019 KRTAP10-5P60370 271 aa3.62□□□□□ -1.83
SF3A3-201ENST00000373019 CRCT1Q9UGL9 99 aa3.6□□□□□ -1.83
SF3A3-201ENST00000373019 KRTAP9-6A0A140TA67 174 aa3.58□□□□□ -1.84
SF3A3-201ENST00000373019 SSPOA2VEC9 5147 aa3.57□□□□□ -1.84
SF3A3-201ENST00000373019 KRTAP9-3Q9BYQ3 159 aa3.56□□□□□ -1.84
SF3A3-201ENST00000373019 MT1XP80297 61 aa3.52□□□□□ -1.85
SF3A3-201ENST00000373019 KRTAP9-6A8MVA2 160 aa3.5□□□□□ -1.85
SF3A3-201ENST00000373019 SYNE2Q8WXH0 6885 aaKnown RBP3.5□□□□□ -1.85
SF3A3-201ENST00000373019 KRTAP2-3P0C7H8 128 aa3.5□□□□□ -1.85
SF3A3-201ENST00000373019 LCE3CQ5T5A8 94 aa3.5□□□□□ -1.85
SF3A3-201ENST00000373019 KRTAP2-4Q9BYR9 128 aa3.5□□□□□ -1.85
SF3A3-201ENST00000373019 KRTAP2-1Q9BYU5 128 aa3.5□□□□□ -1.85
SF3A3-201ENST00000373019 KRTAP10-7P60409 375 aaPredicted RBP3.48□□□□□ -1.85
SF3A3-201ENST00000373019 FCGBPQ9Y6R7 5405 aaPredicted RBP3.46□□□□□ -1.86
SF3A3-201ENST00000373019 MACF1Q9UPN3 7388 aaKnown RBP3.45□□□□□ -1.86
SF3A3-201ENST00000373019 KRTAP19-8Q3LI54 63 aa3.45□□□□□ -1.86
SF3A3-201ENST00000373019 MT1BP07438 61 aa3.43□□□□□ -1.86
SF3A3-201ENST00000373019 KRTAP19-5Q3LI72 72 aa3.39□□□□□ -1.87
SF3A3-201ENST00000373019 KMT2DO14686 5537 aa3.38□□□□□ -1.87
SF3A3-201ENST00000373019 KRTAP19-6Q3LI70 58 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 113.9 ms