RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 LYSTQ99698 3801 aa6.24□□□□□ -1.41
COL5A1-201ENST00000371817 LORP23490 312 aaPredicted RBP6.13□□□□□ -1.43
COL5A1-201ENST00000371817 HUWE1Q7Z6Z7 4374 aaKnown RBP6.13□□□□□ -1.43
COL5A1-201ENST00000371817 MT1HL1P0DM35 61 aa6.13□□□□□ -1.43
COL5A1-201ENST00000371817 DNAH2Q9P225 4427 aa6.12□□□□□ -1.43
COL5A1-201ENST00000371817 KRTAP8-1Q8IUC2 63 aa6.09□□□□□ -1.44
COL5A1-201ENST00000371817 CMYA5Q8N3K9 4069 aa6.07□□□□□ -1.44
COL5A1-201ENST00000371817 FRAS1Q86XX4 4008 aa6.01□□□□□ -1.45
COL5A1-201ENST00000371817 DNAH3Q8TD57 4116 aa5.94□□□□□ -1.46
COL5A1-201ENST00000371817 KRTAP4-5Q9BYR2 181 aa5.9□□□□□ -1.46
COL5A1-201ENST00000371817 LCE3CQ5T5A8 94 aa5.9□□□□□ -1.47
COL5A1-201ENST00000371817 KMT2AQ03164 3969 aa5.89□□□□□ -1.47
COL5A1-201ENST00000371817 VPS13BQ7Z7G8 4022 aa5.89□□□□□ -1.47
COL5A1-201ENST00000371817 DNAH1Q9P2D7 4330 aa5.89□□□□□ -1.47
COL5A1-201ENST00000371817 ANK2Q01484 3957 aa5.89□□□□□ -1.47
COL5A1-201ENST00000371817 DNAH7Q8WXX0 4024 aa5.89□□□□□ -1.47
COL5A1-201ENST00000371817 HECTD4Q9Y4D8 3996 aa5.85□□□□□ -1.47
COL5A1-201ENST00000371817 KRTAP10-4P60372 401 aaPredicted RBP5.84□□□□□ -1.47
COL5A1-201ENST00000371817 KRTAP10-7P60409 375 aaPredicted RBP5.78□□□□□ -1.48
COL5A1-201ENST00000371817 KRTAP19-5Q3LI72 72 aa5.74□□□□□ -1.49
COL5A1-201ENST00000371817 DNAH6Q9C0G6 4158 aa5.73□□□□□ -1.49
COL5A1-201ENST00000371817 KRTAP19-4Q3LI73 84 aa5.73□□□□□ -1.49
COL5A1-201ENST00000371817 SPRR2GQ9BYE4 73 aa5.72□□□□□ -1.49
COL5A1-201ENST00000371817 KRTAP12-4P60329 112 aa5.65□□□□□ -1.5
COL5A1-201ENST00000371817 DNAH8Q96JB1 4490 aa5.6□□□□□ -1.51
COL5A1-201ENST00000371817 DNAH9Q9NYC9 4486 aa5.57□□□□□ -1.52
COL5A1-201ENST00000371817 LCE3BQ5TA77 95 aa5.52□□□□□ -1.53
COL5A1-201ENST00000371817 DNAH10Q8IVF4 4471 aa5.51□□□□□ -1.53
COL5A1-201ENST00000371817 SPRR2FQ96RM1 72 aa5.5□□□□□ -1.53
COL5A1-201ENST00000371817 FLGP20930 4061 aaPredicted RBP5.48□□□□□ -1.53
COL5A1-201ENST00000371817 FAT2Q9NYQ8 4349 aa5.48□□□□□ -1.53
COL5A1-201ENST00000371817 MT1HP80294 61 aa5.46□□□□□ -1.54
COL5A1-201ENST00000371817 PRKDCP78527 4128 aaKnown RBP5.46□□□□□ -1.54
COL5A1-201ENST00000371817 MT2AP02795 61 aa5.41□□□□□ -1.54
COL5A1-201ENST00000371817 SPRR5A0A1B0GTR4 108 aa5.39□□□□□ -1.55
COL5A1-201ENST00000371817 KRTAP4-1Q9BYQ7 146 aa5.39□□□□□ -1.55
COL5A1-201ENST00000371817 LCE3DQ9BYE3 92 aa5.31□□□□□ -1.56
COL5A1-201ENST00000371817 DYNC2H1Q8NCM8 4307 aaKnown RBP5.31□□□□□ -1.56
COL5A1-201ENST00000371817 DNAH17Q9UFH2 4485 aa5.29□□□□□ -1.56
COL5A1-201ENST00000371817 MT1FP04733 61 aa5.29□□□□□ -1.56
COL5A1-201ENST00000371817 DNAH11Q96DT5 4516 aa5.26□□□□□ -1.57
COL5A1-201ENST00000371817 VPS13DQ5THJ4 4388 aa5.24□□□□□ -1.57
COL5A1-201ENST00000371817 LCE3EQ5T5B0 92 aa5.23□□□□□ -1.57
COL5A1-201ENST00000371817 STARD9Q9P2P6 4700 aa5.22□□□□□ -1.57
COL5A1-201ENST00000371817 SPRR2EP22531 72 aa5.21□□□□□ -1.58
COL5A1-201ENST00000371817 SPRR2BP35325 72 aa5.21□□□□□ -1.58
COL5A1-201ENST00000371817 SPRR2AP35326 72 aa5.21□□□□□ -1.58
COL5A1-201ENST00000371817 MT1GP13640 62 aa5.2□□□□□ -1.58
COL5A1-201ENST00000371817 PLECQ15149 4684 aaKnown RBP5.2□□□□□ -1.58
COL5A1-201ENST00000371817 DNAH5Q8TE73 4624 aa5.16□□□□□ -1.58
COL5A1-201ENST00000371817 MT3P25713 68 aa5.11□□□□□ -1.59
COL5A1-201ENST00000371817 SPRR2DP22532 72 aa5.08□□□□□ -1.6
COL5A1-201ENST00000371817 LCE2BO14633 110 aa5.08□□□□□ -1.6
COL5A1-201ENST00000371817 KRTAP19-8Q3LI54 63 aa5.07□□□□□ -1.6
COL5A1-201ENST00000371817 MT1XP80297 61 aa5.06□□□□□ -1.6
COL5A1-201ENST00000371817 KRTAP19-1Q8IUB9 90 aa5.04□□□□□ -1.6
COL5A1-201ENST00000371817 LRP1BQ9NZR2 4599 aa5.03□□□□□ -1.6
COL5A1-201ENST00000371817 PKHD1P08F94 4074 aa5.01□□□□□ -1.61
COL5A1-201ENST00000371817 FAT1Q14517 4588 aa5.01□□□□□ -1.61
COL5A1-201ENST00000371817 PRM1P04553 51 aa5□□□□□ -1.61
COL5A1-201ENST00000371817 APOBP04114 4563 aaKnown RBP4.97□□□□□ -1.61
COL5A1-201ENST00000371817 PKHD1L1Q86WI1 4243 aa4.95□□□□□ -1.62
COL5A1-201ENST00000371817 LRP1Q07954 4544 aaKnown RBP4.89□□□□□ -1.63
COL5A1-201ENST00000371817 MT1LQ93083 61 aa4.85□□□□□ -1.63
COL5A1-201ENST00000371817 PKD1P98161 4303 aa4.82□□□□□ -1.64
COL5A1-201ENST00000371817 KRTAP4-8A0A0G2JLE6 195 aa4.81□□□□□ -1.64
COL5A1-201ENST00000371817 KRTAP4-8Q9BYQ9 185 aa4.81□□□□□ -1.64
COL5A1-201ENST00000371817 SACSQ9NZJ4 4579 aa4.81□□□□□ -1.64
COL5A1-201ENST00000371817 LCE2CQ5TA81 110 aa4.76□□□□□ -1.65
COL5A1-201ENST00000371817 MT1BP07438 61 aa4.76□□□□□ -1.65
COL5A1-201ENST00000371817 FAT3Q8TDW7 4589 aa4.73□□□□□ -1.65
COL5A1-201ENST00000371817 DYNC1H1Q14204 4646 aaKnown RBP4.72□□□□□ -1.65
COL5A1-201ENST00000371817 MYCBP2O75592 4640 aa4.71□□□□□ -1.66
COL5A1-201ENST00000371817 KRTAP19-3Q7Z4W3 81 aa4.7□□□□□ -1.66
COL5A1-201ENST00000371817 TNXBP22105 4242 aa4.67□□□□□ -1.66
COL5A1-201ENST00000371817 LCE2DQ5TA82 110 aaPredicted RBP4.65□□□□□ -1.67
COL5A1-201ENST00000371817 KRTAP4-7Q9BYR0 210 aa4.65□□□□□ -1.67
COL5A1-201ENST00000371817 KRTAP9-8Q9BYQ0 159 aa4.64□□□□□ -1.67
COL5A1-201ENST00000371817 HSPG2P98160 4391 aa4.6□□□□□ -1.67
COL5A1-201ENST00000371817 MT1EP04732 61 aa4.58□□□□□ -1.68
COL5A1-201ENST00000371817 LPAP08519 4548 aa4.52□□□□□ -1.69
COL5A1-201ENST00000371817 KRTAP9-3Q9BYQ3 159 aa4.51□□□□□ -1.69
COL5A1-201ENST00000371817 LCE1BQ5T7P3 118 aa4.5□□□□□ -1.69
COL5A1-201ENST00000371817 LCE1DQ5T752 114 aa4.48□□□□□ -1.69
COL5A1-201ENST00000371817 LOC100996750A0A140TA64 210 aa4.46□□□□□ -1.69
COL5A1-201ENST00000371817 MT1MQ8N339 61 aa4.45□□□□□ -1.7
COL5A1-201ENST00000371817 MT4P47944 62 aa4.43□□□□□ -1.7
COL5A1-201ENST00000371817 DNHD1Q96M86 4753 aa4.42□□□□□ -1.7
COL5A1-201ENST00000371817 KRTAP17-1Q9BYP8 105 aa4.41□□□□□ -1.7
COL5A1-201ENST00000371817 KRTAP2-3P0C7H8 128 aa4.4□□□□□ -1.7
COL5A1-201ENST00000371817 KRTAP2-4Q9BYR9 128 aa4.4□□□□□ -1.7
COL5A1-201ENST00000371817 KRTAP2-1Q9BYU5 128 aa4.4□□□□□ -1.7
COL5A1-201ENST00000371817 RYR1P21817 5038 aa4.36□□□□□ -1.71
COL5A1-201ENST00000371817 KRTAP9-2Q9BYQ4 174 aa4.34□□□□□ -1.71
COL5A1-201ENST00000371817 KRTAP4-9Q9BYQ8 210 aa4.29□□□□□ -1.72
COL5A1-201ENST00000371817 MT1AP04731 61 aa4.28□□□□□ -1.72
COL5A1-201ENST00000371817 LRP2P98164 4655 aa4.28□□□□□ -1.72
COL5A1-201ENST00000371817 KRTAP4-3Q9BYR4 195 aa4.26□□□□□ -1.73
COL5A1-201ENST00000371817 KRTAP6-2Q3LI66 62 aa4.25□□□□□ -1.73
COL5A1-201ENST00000371817 KRTAP19-6Q3LI70 58 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms