RNA–Protein interactions for RNA: ENST00000369407.3

PHGDH-201, Transcript of phosphoglycerate dehydrogenase, humanhuman

TSL 2

Gene PHGDH, Length 3,180 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-201ENST00000369407 KRTAP13-4Q3LI77 160 aa6.42□□□□□ -1.38
PHGDH-201ENST00000369407 RPS29P62273 56 aaKnown RBP6.41□□□□□ -1.38
PHGDH-201ENST00000369407 PKHD1L1Q86WI1 4243 aa6.41□□□□□ -1.38
PHGDH-201ENST00000369407 MYCBP2O75592 4640 aa6.4□□□□□ -1.39
PHGDH-201ENST00000369407 APOBP04114 4563 aaKnown RBP6.37□□□□□ -1.39
PHGDH-201ENST00000369407 HSPG2P98160 4391 aa6.37□□□□□ -1.39
PHGDH-201ENST00000369407 KRTAP10-6P60371 365 aaPredicted RBP6.37□□□□□ -1.39
PHGDH-201ENST00000369407 RPL37P61927 97 aaKnown RBP6.36□□□□□ -1.39
PHGDH-201ENST00000369407 LRP1Q07954 4544 aaKnown RBP6.35□□□□□ -1.39
PHGDH-201ENST00000369407 KRTAP3-3Q9BYR6 98 aa6.34□□□□□ -1.39
PHGDH-201ENST00000369407 KMT2CQ8NEZ4 4911 aaKnown RBP6.32□□□□□ -1.4
PHGDH-201ENST00000369407 KRTAP15-1Q3LI76 137 aa6.31□□□□□ -1.4
PHGDH-201ENST00000369407 FAT3Q8TDW7 4589 aa6.3□□□□□ -1.4
PHGDH-201ENST00000369407 KRTAP10-8P60410 259 aa6.3□□□□□ -1.4
PHGDH-201ENST00000369407 KRTAP3-2Q9BYR7 98 aa6.3□□□□□ -1.4
PHGDH-201ENST00000369407 LUZP6Q538Z0 58 aa6.28□□□□□ -1.4
PHGDH-201ENST00000369407 KRTAP10-4P60372 401 aaPredicted RBP6.28□□□□□ -1.4
PHGDH-201ENST00000369407 S4R3F8 94 aa6.23□□□□□ -1.41
PHGDH-201ENST00000369407 KRTAP12-2P59991 146 aa6.22□□□□□ -1.41
PHGDH-201ENST00000369407 LPAP08519 4548 aa6.2□□□□□ -1.42
PHGDH-201ENST00000369407 TNXBP22105 4242 aa6.18□□□□□ -1.42
PHGDH-201ENST00000369407 XP32Q5T750 250 aa6.13□□□□□ -1.43
PHGDH-201ENST00000369407 A0A1B0GVY2 172 aa6.13□□□□□ -1.43
PHGDH-201ENST00000369407 RYR2Q92736 4967 aa6.11□□□□□ -1.43
PHGDH-201ENST00000369407 KRTAP12-1P59990 96 aa6.1□□□□□ -1.43
PHGDH-201ENST00000369407 KRTAP21-3Q3LHN1 58 aa6.08□□□□□ -1.44
PHGDH-201ENST00000369407 LRP2P98164 4655 aa6.05□□□□□ -1.44
PHGDH-201ENST00000369407 RYR3Q15413 4870 aa6.05□□□□□ -1.44
PHGDH-201ENST00000369407 KIAA1109Q2LD37 5005 aa6.04□□□□□ -1.44
PHGDH-201ENST00000369407 Q5VSD8 79 aa6□□□□□ -1.45
PHGDH-201ENST00000369407 KRTAP17-1Q9BYP8 105 aa5.95□□□□□ -1.46
PHGDH-201ENST00000369407 PLAC4Q8WY50 150 aa5.94□□□□□ -1.46
PHGDH-201ENST00000369407 M0QZ58 72 aa5.91□□□□□ -1.46
PHGDH-201ENST00000369407 RYR1P21817 5038 aa5.9□□□□□ -1.46
PHGDH-201ENST00000369407 EPPK1P58107 5090 aaKnown RBP5.88□□□□□ -1.47
PHGDH-201ENST00000369407 R4GN34 69 aa5.84□□□□□ -1.47
PHGDH-201ENST00000369407 ABCA13Q86UQ4 5058 aa5.83□□□□□ -1.48
PHGDH-201ENST00000369407 MT1HL1P0DM35 61 aa5.82□□□□□ -1.48
PHGDH-201ENST00000369407 LORP23490 312 aaPredicted RBP5.82□□□□□ -1.48
PHGDH-201ENST00000369407 KRTAP4-5Q9BYR2 181 aa5.75□□□□□ -1.49
PHGDH-201ENST00000369407 MUC17Q685J3 4493 aa5.65□□□□□ -1.51
PHGDH-201ENST00000369407 SEC61BP60468 96 aaKnown RBP5.61□□□□□ -1.51
PHGDH-201ENST00000369407 MUC2Q02817 5179 aa5.61□□□□□ -1.51
PHGDH-201ENST00000369407 CAMK2N1Q7Z7J9 78 aa5.61□□□□□ -1.51
PHGDH-201ENST00000369407 KRTAP4-1Q9BYQ7 146 aa5.59□□□□□ -1.51
PHGDH-201ENST00000369407 J3QL48 77 aa5.55□□□□□ -1.52
PHGDH-201ENST00000369407 HERC2O95714 4834 aa5.55□□□□□ -1.52
PHGDH-201ENST00000369407 PP632Q6XCG6 107 aa5.45□□□□□ -1.54
PHGDH-201ENST00000369407 HERC1Q15751 4861 aa5.42□□□□□ -1.54
PHGDH-201ENST00000369407 KRTAP19-2Q3LHN2 52 aa5.4□□□□□ -1.54
PHGDH-201ENST00000369407 PCLOQ9Y6V0 5065 aa5.37□□□□□ -1.55
PHGDH-201ENST00000369407 TNP1P09430 55 aa5.34□□□□□ -1.55
PHGDH-201ENST00000369407 FAT4Q6V0I7 4981 aa5.32□□□□□ -1.56
PHGDH-201ENST00000369407 FLGP20930 4061 aaPredicted RBP5.31□□□□□ -1.56
PHGDH-201ENST00000369407 RNF213Q63HN8 5207 aa5.29□□□□□ -1.56
PHGDH-201ENST00000369407 PRO2289Q9P1D8 64 aa5.25□□□□□ -1.57
PHGDH-201ENST00000369407 BIRC6Q9NR09 4857 aa5.22□□□□□ -1.57
PHGDH-201ENST00000369407 SPRR5A0A1B0GTR4 108 aa5.19□□□□□ -1.58
PHGDH-201ENST00000369407 UBR4Q5T4S7 5183 aa5.15□□□□□ -1.58
PHGDH-201ENST00000369407 LCE3AQ5TA76 89 aa5.11□□□□□ -1.59
PHGDH-201ENST00000369407 KRTAP23-1A1A580 65 aa5.1□□□□□ -1.59
PHGDH-201ENST00000369407 HMCN2Q8NDA2 5059 aa5.09□□□□□ -1.59
PHGDH-201ENST00000369407 M0R2T5 61 aa5.08□□□□□ -1.6
PHGDH-201ENST00000369407 KRTAP19-1Q8IUB9 90 aa5.06□□□□□ -1.6
PHGDH-201ENST00000369407 SPRR2GQ9BYE4 73 aa5.01□□□□□ -1.61
PHGDH-201ENST00000369407 LCE2CQ5TA81 110 aa5□□□□□ -1.61
PHGDH-201ENST00000369407 INE1O15225 51 aa4.98□□□□□ -1.61
PHGDH-201ENST00000369407 KRTAP10-10P60014 251 aa4.93□□□□□ -1.62
PHGDH-201ENST00000369407 MT1FP04733 61 aa4.9□□□□□ -1.62
PHGDH-201ENST00000369407 MT2AP02795 61 aa4.86□□□□□ -1.63
PHGDH-201ENST00000369407 MT1HP80294 61 aa4.86□□□□□ -1.63
PHGDH-201ENST00000369407 KRTAP8-1Q8IUC2 63 aa4.84□□□□□ -1.63
PHGDH-201ENST00000369407 KRTAP12-3P60328 96 aa4.81□□□□□ -1.64
PHGDH-201ENST00000369407 KRTAP10-5P60370 271 aa4.8□□□□□ -1.64
PHGDH-201ENST00000369407 MT1XP80297 61 aa4.79□□□□□ -1.64
PHGDH-201ENST00000369407 KRTAP9-8Q9BYQ0 159 aa4.78□□□□□ -1.64
PHGDH-201ENST00000369407 KRTAP10-12P60413 245 aa4.77□□□□□ -1.65
PHGDH-201ENST00000369407 MT1BP07438 61 aa4.75□□□□□ -1.65
PHGDH-201ENST00000369407 KRTAP10-7P60409 375 aaPredicted RBP4.75□□□□□ -1.65
PHGDH-201ENST00000369407 KMT2DO14686 5537 aa4.73□□□□□ -1.65
PHGDH-201ENST00000369407 USH2AO75445 5202 aa4.72□□□□□ -1.65
PHGDH-201ENST00000369407 KRTAP19-8Q3LI54 63 aa4.71□□□□□ -1.65
PHGDH-201ENST00000369407 FSIP2Q5CZC0 6907 aa4.6□□□□□ -1.67
PHGDH-201ENST00000369407 KRTAP19-5Q3LI72 72 aa4.57□□□□□ -1.68
PHGDH-201ENST00000369407 KRTAP9-3Q9BYQ3 159 aa4.54□□□□□ -1.68
PHGDH-201ENST00000369407 LCE3CQ5T5A8 94 aa4.51□□□□□ -1.69
PHGDH-201ENST00000369407 KRTAP4-8A0A0G2JLE6 195 aa4.48□□□□□ -1.69
PHGDH-201ENST00000369407 KRTAP4-8Q9BYQ9 185 aa4.48□□□□□ -1.69
PHGDH-201ENST00000369407 KRTAP9-6A8MVA2 160 aa4.47□□□□□ -1.69
PHGDH-201ENST00000369407 KRTAP4-7Q9BYR0 210 aa4.44□□□□□ -1.7
PHGDH-201ENST00000369407 LCE2BO14633 110 aa4.4□□□□□ -1.71
PHGDH-201ENST00000369407 KRTAP2-3P0C7H8 128 aa4.26□□□□□ -1.73
PHGDH-201ENST00000369407 KRTAP19-7Q3SYF9 63 aa4.26□□□□□ -1.73
PHGDH-201ENST00000369407 KRTAP2-4Q9BYR9 128 aa4.26□□□□□ -1.73
PHGDH-201ENST00000369407 KRTAP2-1Q9BYU5 128 aa4.26□□□□□ -1.73
PHGDH-201ENST00000369407 LCE2AQ5TA79 106 aaPredicted RBP4.23□□□□□ -1.73
PHGDH-201ENST00000369407 SSPOA2VEC9 5147 aa4.16□□□□□ -1.74
PHGDH-201ENST00000369407 MT1LQ93083 61 aa4.14□□□□□ -1.75
PHGDH-201ENST00000369407 LOC100996750A0A140TA64 210 aa4.12□□□□□ -1.75
PHGDH-201ENST00000369407 MT1EP04732 61 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 823.5 ms