RNA–Protein interactions for RNA: ENST00000369407.3

PHGDH-201, Transcript of phosphoglycerate dehydrogenase, humanhuman

TSL 2

Gene PHGDH, Length 3,180 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-201ENST00000369407 NISCHQ9Y2I1 1504 aa23.71■■□□□ 1.39
PHGDH-201ENST00000369407 SHROOM4Q9ULL8 1493 aa21.21■□□□□ 0.99
PHGDH-201ENST00000369407 SUPT5HO00267 1087 aaKnown RBP21.03■□□□□ 0.96
PHGDH-201ENST00000369407 HRCP23327 699 aa20.67■□□□□ 0.9
PHGDH-201ENST00000369407 PCGF6Q9BYE7 350 aa20.54■□□□□ 0.88
PHGDH-201ENST00000369407 MYO15BQ96JP2 1530 aa20.52■□□□□ 0.88
PHGDH-201ENST00000369407 PPARGC1BQ86YN6 1023 aaKnown RBP20.5■□□□□ 0.87
PHGDH-201ENST00000369407 CHIC1Q5VXU3 224 aa20.44■□□□□ 0.86
PHGDH-201ENST00000369407 DCAF8L2P0C7V8 631 aa20.22■□□□□ 0.83
PHGDH-201ENST00000369407 LOC105371045A0A1W2PR82 267 aa20.11■□□□□ 0.81
PHGDH-201ENST00000369407 ZCCHC6Q5VYS8 1495 aaKnown RBP20.1■□□□□ 0.81
PHGDH-201ENST00000369407 DCAF1Q9Y4B6 1507 aa19.81■□□□□ 0.76
PHGDH-201ENST00000369407 PELP1Q8IZL8 1130 aaKnown RBP19.77■□□□□ 0.76
PHGDH-201ENST00000369407 TRIM26Q12899 539 aaPredicted RBP19.76■□□□□ 0.75
PHGDH-201ENST00000369407 CCDC180Q9P1Z9 1646 aa19.61■□□□□ 0.73
PHGDH-201ENST00000369407 EHMT2Q96KQ7 1210 aa19.57■□□□□ 0.72
PHGDH-201ENST00000369407 FAM9AQ8IZU1 332 aaPredicted RBP19.51■□□□□ 0.71
PHGDH-201ENST00000369407 SCAF1Q9H7N4 1312 aaKnown RBP19.51■□□□□ 0.71
PHGDH-201ENST00000369407 ZEB1P37275 1124 aaPredicted RBP19.4■□□□□ 0.7
PHGDH-201ENST00000369407 TRIM41Q8WV44 630 aa19.35■□□□□ 0.69
PHGDH-201ENST00000369407 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.14■□□□□ 0.66
PHGDH-201ENST00000369407 RSF1Q96T23 1441 aaPredicted RBP19.09■□□□□ 0.65
PHGDH-201ENST00000369407 NEUROD1Q13562 356 aa19.08■□□□□ 0.65
PHGDH-201ENST00000369407 ABCC9O60706 1549 aa19.04■□□□□ 0.64
PHGDH-201ENST00000369407 MYT1Q01538 1121 aa19.04■□□□□ 0.64
PHGDH-201ENST00000369407 ACIN1Q9UKV3 1341 aaKnown RBP19.03■□□□□ 0.64
PHGDH-201ENST00000369407 CCER1Q8TC90 406 aaPredicted RBP19.03■□□□□ 0.64
PHGDH-201ENST00000369407 TTBK1Q5TCY1 1321 aaPredicted RBP19.02■□□□□ 0.64
PHGDH-201ENST00000369407 RB1CC1Q8TDY2 1594 aa19■□□□□ 0.63
PHGDH-201ENST00000369407 GTF3C3Q9Y5Q9 886 aa18.96■□□□□ 0.63
PHGDH-201ENST00000369407 SCRIBQ14160 1630 aa18.95■□□□□ 0.62
PHGDH-201ENST00000369407 DIEXFQ68CQ4 756 aaKnown RBP18.89■□□□□ 0.61
PHGDH-201ENST00000369407 CENPBP07199 599 aaPredicted RBP18.78■□□□□ 0.6
PHGDH-201ENST00000369407 YTHDC1Q96MU7 727 aaKnown RBP18.74■□□□□ 0.59
PHGDH-201ENST00000369407 CECR2Q9BXF3 1484 aa18.71■□□□□ 0.59
PHGDH-201ENST00000369407 MROH2BQ7Z745 1585 aa18.6■□□□□ 0.57
PHGDH-201ENST00000369407 ZNF316A6NFI3 1004 aaPredicted RBP18.53■□□□□ 0.56
PHGDH-201ENST00000369407 WIZO95785 1651 aa18.52■□□□□ 0.56
PHGDH-201ENST00000369407 MIER1Q8N108 512 aa18.48■□□□□ 0.55
PHGDH-201ENST00000369407 CEP162Q5TB80 1403 aa18.44■□□□□ 0.54
PHGDH-201ENST00000369407 UBTFP17480 764 aaKnown RBP18.44■□□□□ 0.54
PHGDH-201ENST00000369407 HNRNPUL2Q1KMD3 747 aaKnown RBP18.43■□□□□ 0.54
PHGDH-201ENST00000369407 ABCC8Q09428 1581 aa18.42■□□□□ 0.54
PHGDH-201ENST00000369407 CCDC88BA6NC98 1476 aa18.41■□□□□ 0.54
PHGDH-201ENST00000369407 SOGA1O94964 1423 aa18.38■□□□□ 0.53
PHGDH-201ENST00000369407 WRNQ14191 1432 aaPredicted RBP eCLIP18.35■□□□□ 0.53
PHGDH-201ENST00000369407 RUSC2Q8N2Y8 1516 aa18.29■□□□□ 0.52
PHGDH-201ENST00000369407 CSRNP3Q8WYN3 585 aa18.28■□□□□ 0.52
PHGDH-201ENST00000369407 EIF4G1Q04637 1599 aaKnown RBP18.27■□□□□ 0.51
PHGDH-201ENST00000369407 TNIKQ9UKE5 1360 aa18.26■□□□□ 0.51
PHGDH-201ENST00000369407 RANGAP1P46060 587 aaPredicted RBP18.26■□□□□ 0.51
PHGDH-201ENST00000369407 BAZ1AQ9NRL2 1556 aaPredicted RBP18.24■□□□□ 0.51
PHGDH-201ENST00000369407 BCL11AQ9H165 835 aa18.21■□□□□ 0.51
PHGDH-201ENST00000369407 NACADO15069 1562 aa18.14■□□□□ 0.49
PHGDH-201ENST00000369407 GOLGA3Q08378 1498 aa18.06■□□□□ 0.48
PHGDH-201ENST00000369407 TOP2AP11388 1531 aaKnown RBP18.05■□□□□ 0.48
PHGDH-201ENST00000369407 SMARCA2P51531 1590 aa18.05■□□□□ 0.48
PHGDH-201ENST00000369407 APLP2Q06481 763 aa18.04■□□□□ 0.48
PHGDH-201ENST00000369407 SUPT16HQ9Y5B9 1047 aaKnown RBP18.04■□□□□ 0.48
PHGDH-201ENST00000369407 CLIP1P30622 1438 aa17.99■□□□□ 0.47
PHGDH-201ENST00000369407 EEA1Q15075 1411 aa17.99■□□□□ 0.47
PHGDH-201ENST00000369407 PABPN1Q86U42 306 aaKnown RBP eCLIP17.95■□□□□ 0.46
PHGDH-201ENST00000369407 SMARCA4P51532 1647 aa17.93■□□□□ 0.46
PHGDH-201ENST00000369407 TSHZ2Q9NRE2 1034 aa17.9■□□□□ 0.46
PHGDH-201ENST00000369407 KCNH8Q96L42 1107 aa17.9■□□□□ 0.46
PHGDH-201ENST00000369407 BCANQ96GW7 911 aa17.89■□□□□ 0.45
PHGDH-201ENST00000369407 VPS8Q8N3P4 1428 aa17.89■□□□□ 0.45
PHGDH-201ENST00000369407 CEP164Q9UPV0 1460 aa17.87■□□□□ 0.45
PHGDH-201ENST00000369407 DHX57Q6P158 1386 aaKnown RBP17.85■□□□□ 0.45
PHGDH-201ENST00000369407 RAPGEF2Q9Y4G8 1499 aa17.84■□□□□ 0.45
PHGDH-201ENST00000369407 ITGAEP38570 1179 aa17.84■□□□□ 0.45
PHGDH-201ENST00000369407 KANK4Q5T7N3 995 aaPredicted RBP17.81■□□□□ 0.44
PHGDH-201ENST00000369407 PRKCSHP14314 528 aaPredicted RBP17.81■□□□□ 0.44
PHGDH-201ENST00000369407 SYNJ1O43426 1573 aa17.8■□□□□ 0.44
PHGDH-201ENST00000369407 ANP32EQ9BTT0 268 aa17.76■□□□□ 0.43
PHGDH-201ENST00000369407 KIF21BO75037 1637 aa17.75■□□□□ 0.43
PHGDH-201ENST00000369407 CLSPNQ9HAW4 1339 aa17.72■□□□□ 0.43
PHGDH-201ENST00000369407 FKBP8Q14318 412 aa17.69■□□□□ 0.42
PHGDH-201ENST00000369407 DDX10Q13206 875 aaKnown RBP17.64■□□□□ 0.41
PHGDH-201ENST00000369407 BAZ1BQ9UIG0 1483 aaKnown RBP17.63■□□□□ 0.41
PHGDH-201ENST00000369407 HIRIP3Q9BW71 556 aaPredicted RBP17.63■□□□□ 0.41
PHGDH-201ENST00000369407 UNC13AQ9UPW8 1703 aa17.58■□□□□ 0.4
PHGDH-201ENST00000369407 ARAP1Q96P48 1450 aa17.58■□□□□ 0.4
PHGDH-201ENST00000369407 TRIM52Q96A61 297 aa17.57■□□□□ 0.4
PHGDH-201ENST00000369407 SIN3AQ96ST3 1273 aa17.56■□□□□ 0.4
PHGDH-201ENST00000369407 CCNB3Q8WWL7 1395 aa17.52■□□□□ 0.4
PHGDH-201ENST00000369407 RBM19Q9Y4C8 960 aaKnown RBP17.51■□□□□ 0.39
PHGDH-201ENST00000369407 RAB3GAP2Q9H2M9 1393 aa17.5■□□□□ 0.39
PHGDH-201ENST00000369407 RRBP1Q9P2E9 1410 aaKnown RBP17.49■□□□□ 0.39
PHGDH-201ENST00000369407 NEFLP07196 543 aa17.47■□□□□ 0.39
PHGDH-201ENST00000369407 FAM50AQ14320 339 aaKnown RBP17.43■□□□□ 0.38
PHGDH-201ENST00000369407 PRXQ9BXM0 1461 aa17.43■□□□□ 0.38
PHGDH-201ENST00000369407 ATAD2BQ9ULI0 1458 aa17.43■□□□□ 0.38
PHGDH-201ENST00000369407 MAPKBP1O60336 1514 aa17.42■□□□□ 0.38
PHGDH-201ENST00000369407 WDR97A6NE52 1622 aa17.4■□□□□ 0.38
PHGDH-201ENST00000369407 IRX6P78412 446 aaPredicted RBP17.4■□□□□ 0.38
PHGDH-201ENST00000369407 BICRAQ9NZM4 1560 aa17.4■□□□□ 0.38
PHGDH-201ENST00000369407 ATP1B4Q9UN42 357 aaPredicted RBP17.39■□□□□ 0.37
PHGDH-201ENST00000369407 PPP1R15AO75807 674 aaPredicted RBP17.39■□□□□ 0.37
PHGDH-201ENST00000369407 TOP2BQ02880 1626 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms