RNA–Protein interactions for RNA: ENST00000361545.9

CLIP2-202, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

TSL 1 (best) BASIC

Gene CLIP2, Length 5,445 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-202ENST00000361545 CRCT1Q9UGL9 99 aa8.15□□□□□ -1.1
CLIP2-202ENST00000361545 AKAP9Q99996 3911 aa8.13□□□□□ -1.11
CLIP2-202ENST00000361545 LORP23490 312 aaPredicted RBP8.03□□□□□ -1.12
CLIP2-202ENST00000361545 PLECQ15149 4684 aaKnown RBP8.03□□□□□ -1.12
CLIP2-202ENST00000361545 INE1O15225 51 aa7.99□□□□□ -1.13
CLIP2-202ENST00000361545 DNAH1Q9P2D7 4330 aa7.99□□□□□ -1.13
CLIP2-202ENST00000361545 KRTAP12-3P60328 96 aa7.94□□□□□ -1.14
CLIP2-202ENST00000361545 DNAH11Q96DT5 4516 aa7.93□□□□□ -1.14
CLIP2-202ENST00000361545 LCE3AQ5TA76 89 aa7.88□□□□□ -1.15
CLIP2-202ENST00000361545 KRTAP4-1Q9BYQ7 146 aa7.88□□□□□ -1.15
CLIP2-202ENST00000361545 DNAH10Q8IVF4 4471 aa7.85□□□□□ -1.15
CLIP2-202ENST00000361545 DYNC1H1Q14204 4646 aaKnown RBP7.8□□□□□ -1.16
CLIP2-202ENST00000361545 RYR1P21817 5038 aa7.76□□□□□ -1.17
CLIP2-202ENST00000361545 MT1HP80294 61 aa7.76□□□□□ -1.17
CLIP2-202ENST00000361545 VPS13DQ5THJ4 4388 aa7.75□□□□□ -1.17
CLIP2-202ENST00000361545 KRTAP8-1Q8IUC2 63 aa7.74□□□□□ -1.17
CLIP2-202ENST00000361545 FAT1Q14517 4588 aa7.74□□□□□ -1.17
CLIP2-202ENST00000361545 LRP1BQ9NZR2 4599 aa7.73□□□□□ -1.17
CLIP2-202ENST00000361545 DNAH17Q9UFH2 4485 aa7.69□□□□□ -1.18
CLIP2-202ENST00000361545 STARD9Q9P2P6 4700 aa7.68□□□□□ -1.18
CLIP2-202ENST00000361545 KRTAP23-1A1A580 65 aa7.63□□□□□ -1.19
CLIP2-202ENST00000361545 MT2AP02795 61 aa7.61□□□□□ -1.19
CLIP2-202ENST00000361545 DNAH2Q9P225 4427 aa7.57□□□□□ -1.2
CLIP2-202ENST00000361545 PRKDCP78527 4128 aaKnown RBP7.56□□□□□ -1.2
CLIP2-202ENST00000361545 FAT2Q9NYQ8 4349 aa7.55□□□□□ -1.2
CLIP2-202ENST00000361545 SACSQ9NZJ4 4579 aa7.54□□□□□ -1.2
CLIP2-202ENST00000361545 DNAH8Q96JB1 4490 aa7.49□□□□□ -1.21
CLIP2-202ENST00000361545 MT1FP04733 61 aa7.47□□□□□ -1.21
CLIP2-202ENST00000361545 DYNC2H1Q8NCM8 4307 aaKnown RBP7.45□□□□□ -1.22
CLIP2-202ENST00000361545 SPRR2GQ9BYE4 73 aa7.41□□□□□ -1.22
CLIP2-202ENST00000361545 DNAH3Q8TD57 4116 aa7.38□□□□□ -1.23
CLIP2-202ENST00000361545 VPS13BQ7Z7G8 4022 aa7.38□□□□□ -1.23
CLIP2-202ENST00000361545 KMT2AQ03164 3969 aa7.37□□□□□ -1.23
CLIP2-202ENST00000361545 KRTAP10-5P60370 271 aa7.37□□□□□ -1.23
CLIP2-202ENST00000361545 ANK2Q01484 3957 aa7.36□□□□□ -1.23
CLIP2-202ENST00000361545 RYR3Q15413 4870 aa7.36□□□□□ -1.23
CLIP2-202ENST00000361545 APOBP04114 4563 aaKnown RBP7.36□□□□□ -1.23
CLIP2-202ENST00000361545 KIAA1109Q2LD37 5005 aa7.35□□□□□ -1.23
CLIP2-202ENST00000361545 KRTAP17-1Q9BYP8 105 aa7.32□□□□□ -1.24
CLIP2-202ENST00000361545 LYSTQ99698 3801 aa7.32□□□□□ -1.24
CLIP2-202ENST00000361545 SPRR2FQ96RM1 72 aa7.28□□□□□ -1.24
CLIP2-202ENST00000361545 MYCBP2O75592 4640 aa7.22□□□□□ -1.25
CLIP2-202ENST00000361545 KRTAP19-5Q3LI72 72 aa7.15□□□□□ -1.26
CLIP2-202ENST00000361545 KRTAP10-7P60409 375 aaPredicted RBP7.08□□□□□ -1.28
CLIP2-202ENST00000361545 LRP1Q07954 4544 aaKnown RBP7.06□□□□□ -1.28
CLIP2-202ENST00000361545 FAT3Q8TDW7 4589 aa7.04□□□□□ -1.28
CLIP2-202ENST00000361545 RYR2Q92736 4967 aa7.04□□□□□ -1.28
CLIP2-202ENST00000361545 HERC2O95714 4834 aa6.99□□□□□ -1.29
CLIP2-202ENST00000361545 KRTAP19-1Q8IUB9 90 aa6.96□□□□□ -1.29
CLIP2-202ENST00000361545 DNAH6Q9C0G6 4158 aa6.96□□□□□ -1.29
CLIP2-202ENST00000361545 CMYA5Q8N3K9 4069 aa6.96□□□□□ -1.3
CLIP2-202ENST00000361545 DNAH7Q8WXX0 4024 aa6.92□□□□□ -1.3
CLIP2-202ENST00000361545 LCE3CQ5T5A8 94 aa6.92□□□□□ -1.3
CLIP2-202ENST00000361545 FRAS1Q86XX4 4008 aa6.9□□□□□ -1.3
CLIP2-202ENST00000361545 KRTAP19-8Q3LI54 63 aa6.9□□□□□ -1.3
CLIP2-202ENST00000361545 BIRC6Q9NR09 4857 aa6.9□□□□□ -1.31
CLIP2-202ENST00000361545 SPRR2EP22531 72 aa6.83□□□□□ -1.32
CLIP2-202ENST00000361545 SPRR2BP35325 72 aa6.83□□□□□ -1.32
CLIP2-202ENST00000361545 SPRR2AP35326 72 aa6.83□□□□□ -1.32
CLIP2-202ENST00000361545 PCLOQ9Y6V0 5065 aa6.81□□□□□ -1.32
CLIP2-202ENST00000361545 KRTAP9-8Q9BYQ0 159 aa6.79□□□□□ -1.32
CLIP2-202ENST00000361545 HYDINQ4G0P3 5121 aa6.78□□□□□ -1.32
CLIP2-202ENST00000361545 HECTD4Q9Y4D8 3996 aa6.78□□□□□ -1.32
CLIP2-202ENST00000361545 HSPG2P98160 4391 aa6.77□□□□□ -1.33
CLIP2-202ENST00000361545 MT1XP80297 61 aa6.77□□□□□ -1.33
CLIP2-202ENST00000361545 LRP2P98164 4655 aa6.76□□□□□ -1.33
CLIP2-202ENST00000361545 MT1BP07438 61 aa6.75□□□□□ -1.33
CLIP2-202ENST00000361545 LCE2CQ5TA81 110 aa6.71□□□□□ -1.34
CLIP2-202ENST00000361545 PKD1P98161 4303 aa6.68□□□□□ -1.34
CLIP2-202ENST00000361545 HERC1Q15751 4861 aa6.67□□□□□ -1.34
CLIP2-202ENST00000361545 KRTAP9-3Q9BYQ3 159 aa6.64□□□□□ -1.35
CLIP2-202ENST00000361545 KRTAP4-8A0A0G2JLE6 195 aa6.63□□□□□ -1.35
CLIP2-202ENST00000361545 KRTAP4-8Q9BYQ9 185 aa6.63□□□□□ -1.35
CLIP2-202ENST00000361545 KRTAP19-4Q3LI73 84 aa6.63□□□□□ -1.35
CLIP2-202ENST00000361545 PKHD1P08F94 4074 aa6.62□□□□□ -1.35
CLIP2-202ENST00000361545 SPRR2DP22532 72 aa6.6□□□□□ -1.35
CLIP2-202ENST00000361545 LPAP08519 4548 aa6.56□□□□□ -1.36
CLIP2-202ENST00000361545 MT1GP13640 62 aa6.55□□□□□ -1.36
CLIP2-202ENST00000361545 LCE2BO14633 110 aa6.54□□□□□ -1.36
CLIP2-202ENST00000361545 PKHD1L1Q86WI1 4243 aa6.52□□□□□ -1.37
CLIP2-202ENST00000361545 LCE3BQ5TA77 95 aa6.51□□□□□ -1.37
CLIP2-202ENST00000361545 EPPK1P58107 5090 aaKnown RBP6.43□□□□□ -1.38
CLIP2-202ENST00000361545 KMT2CQ8NEZ4 4911 aaKnown RBP6.41□□□□□ -1.38
CLIP2-202ENST00000361545 KRTAP19-2Q3LHN2 52 aa6.36□□□□□ -1.39
CLIP2-202ENST00000361545 KRTAP12-4P60329 112 aa6.35□□□□□ -1.39
CLIP2-202ENST00000361545 ABCA13Q86UQ4 5058 aa6.3□□□□□ -1.4
CLIP2-202ENST00000361545 SPRR5A0A1B0GTR4 108 aa6.28□□□□□ -1.4
CLIP2-202ENST00000361545 TNXBP22105 4242 aa6.22□□□□□ -1.41
CLIP2-202ENST00000361545 KRTAP19-3Q7Z4W3 81 aa6.21□□□□□ -1.42
CLIP2-202ENST00000361545 FSIP2Q5CZC0 6907 aa6.2□□□□□ -1.42
CLIP2-202ENST00000361545 KRTAP4-7Q9BYR0 210 aa6.18□□□□□ -1.42
CLIP2-202ENST00000361545 KRTAP9-2Q9BYQ4 174 aa6.17□□□□□ -1.42
CLIP2-202ENST00000361545 MUC17Q685J3 4493 aa6.15□□□□□ -1.43
CLIP2-202ENST00000361545 MT1LQ93083 61 aa6.12□□□□□ -1.43
CLIP2-202ENST00000361545 FLGP20930 4061 aaPredicted RBP6.11□□□□□ -1.43
CLIP2-202ENST00000361545 UBR4Q5T4S7 5183 aa6.1□□□□□ -1.43
CLIP2-202ENST00000361545 MT1EP04732 61 aa6.1□□□□□ -1.43
CLIP2-202ENST00000361545 KRTAP19-6Q3LI70 58 aa6.04□□□□□ -1.44
CLIP2-202ENST00000361545 LCE2DQ5TA82 110 aaPredicted RBP6.03□□□□□ -1.44
CLIP2-202ENST00000361545 LCE3DQ9BYE3 92 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms