RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 ZNF469Q96JG9 3925 aaPredicted RBP6.74□□□□□ -1.33
PTPRF-201ENST00000359947 LCE3AQ5TA76 89 aa6.71□□□□□ -1.34
PTPRF-201ENST00000359947 AKAP9Q99996 3911 aa6.68□□□□□ -1.34
PTPRF-201ENST00000359947 KRTAP8-1Q8IUC2 63 aa6.67□□□□□ -1.34
PTPRF-201ENST00000359947 DNAH9Q9NYC9 4486 aa6.55□□□□□ -1.36
PTPRF-201ENST00000359947 KRTAP10-5P60370 271 aa6.53□□□□□ -1.36
PTPRF-201ENST00000359947 DNAH1Q9P2D7 4330 aa6.45□□□□□ -1.38
PTPRF-201ENST00000359947 KRTAP4-1Q9BYQ7 146 aa6.4□□□□□ -1.39
PTPRF-201ENST00000359947 MT1HP80294 61 aa6.39□□□□□ -1.39
PTPRF-201ENST00000359947 DNAH5Q8TE73 4624 aa6.39□□□□□ -1.39
PTPRF-201ENST00000359947 DNAH2Q9P225 4427 aa6.31□□□□□ -1.4
PTPRF-201ENST00000359947 SPRR2FQ96RM1 72 aa6.28□□□□□ -1.4
PTPRF-201ENST00000359947 KRTAP23-1A1A580 65 aa6.26□□□□□ -1.41
PTPRF-201ENST00000359947 PLECQ15149 4684 aaKnown RBP6.24□□□□□ -1.41
PTPRF-201ENST00000359947 DNAH10Q8IVF4 4471 aa6.23□□□□□ -1.41
PTPRF-201ENST00000359947 MT2AP02795 61 aa6.22□□□□□ -1.41
PTPRF-201ENST00000359947 DNAH11Q96DT5 4516 aa6.2□□□□□ -1.42
PTPRF-201ENST00000359947 VPS13BQ7Z7G8 4022 aa6.19□□□□□ -1.42
PTPRF-201ENST00000359947 KMT2AQ03164 3969 aa6.18□□□□□ -1.42
PTPRF-201ENST00000359947 ANK2Q01484 3957 aa6.15□□□□□ -1.42
PTPRF-201ENST00000359947 FAT2Q9NYQ8 4349 aa6.15□□□□□ -1.42
PTPRF-201ENST00000359947 KRTAP10-7P60409 375 aaPredicted RBP6.14□□□□□ -1.43
PTPRF-201ENST00000359947 DNAH3Q8TD57 4116 aa6.13□□□□□ -1.43
PTPRF-201ENST00000359947 LYSTQ99698 3801 aa6.12□□□□□ -1.43
PTPRF-201ENST00000359947 MT1FP04733 61 aa6.11□□□□□ -1.43
PTPRF-201ENST00000359947 LRP1BQ9NZR2 4599 aa6.07□□□□□ -1.44
PTPRF-201ENST00000359947 DNHD1Q96M86 4753 aa6.07□□□□□ -1.44
PTPRF-201ENST00000359947 PRKDCP78527 4128 aaKnown RBP6.05□□□□□ -1.44
PTPRF-201ENST00000359947 KRTAP19-5Q3LI72 72 aa6.05□□□□□ -1.44
PTPRF-201ENST00000359947 STARD9Q9P2P6 4700 aa6.05□□□□□ -1.44
PTPRF-201ENST00000359947 VPS13DQ5THJ4 4388 aa6.04□□□□□ -1.44
PTPRF-201ENST00000359947 SPRR2GQ9BYE4 73 aa6.02□□□□□ -1.45
PTPRF-201ENST00000359947 DNAH17Q9UFH2 4485 aa6□□□□□ -1.45
PTPRF-201ENST00000359947 FRAS1Q86XX4 4008 aa6□□□□□ -1.45
PTPRF-201ENST00000359947 FAT1Q14517 4588 aa5.99□□□□□ -1.45
PTPRF-201ENST00000359947 DNAH8Q96JB1 4490 aa5.95□□□□□ -1.46
PTPRF-201ENST00000359947 DYNC2H1Q8NCM8 4307 aaKnown RBP5.95□□□□□ -1.46
PTPRF-201ENST00000359947 SPRR2EP22531 72 aa5.94□□□□□ -1.46
PTPRF-201ENST00000359947 SPRR2BP35325 72 aa5.94□□□□□ -1.46
PTPRF-201ENST00000359947 SPRR2AP35326 72 aa5.94□□□□□ -1.46
PTPRF-201ENST00000359947 DYNC1H1Q14204 4646 aaKnown RBP5.91□□□□□ -1.46
PTPRF-201ENST00000359947 DNAH7Q8WXX0 4024 aa5.9□□□□□ -1.46
PTPRF-201ENST00000359947 RYR1P21817 5038 aa5.87□□□□□ -1.47
PTPRF-201ENST00000359947 SACSQ9NZJ4 4579 aa5.85□□□□□ -1.47
PTPRF-201ENST00000359947 CMYA5Q8N3K9 4069 aa5.84□□□□□ -1.47
PTPRF-201ENST00000359947 LCE3CQ5T5A8 94 aa5.84□□□□□ -1.47
PTPRF-201ENST00000359947 DNAH6Q9C0G6 4158 aa5.79□□□□□ -1.48
PTPRF-201ENST00000359947 SPRR2DP22532 72 aa5.73□□□□□ -1.49
PTPRF-201ENST00000359947 APOBP04114 4563 aaKnown RBP5.72□□□□□ -1.49
PTPRF-201ENST00000359947 KRTAP17-1Q9BYP8 105 aa5.71□□□□□ -1.5
PTPRF-201ENST00000359947 LCE3BQ5TA77 95 aa5.7□□□□□ -1.5
PTPRF-201ENST00000359947 HECTD4Q9Y4D8 3996 aa5.64□□□□□ -1.51
PTPRF-201ENST00000359947 LCE2BO14633 110 aa5.64□□□□□ -1.51
PTPRF-201ENST00000359947 MYCBP2O75592 4640 aa5.62□□□□□ -1.51
PTPRF-201ENST00000359947 MT1GP13640 62 aa5.61□□□□□ -1.51
PTPRF-201ENST00000359947 FAT3Q8TDW7 4589 aa5.6□□□□□ -1.51
PTPRF-201ENST00000359947 RYR3Q15413 4870 aa5.56□□□□□ -1.52
PTPRF-201ENST00000359947 KRTAP19-1Q8IUB9 90 aa5.56□□□□□ -1.52
PTPRF-201ENST00000359947 KRTAP4-8A0A0G2JLE6 195 aa5.53□□□□□ -1.52
PTPRF-201ENST00000359947 KRTAP4-8Q9BYQ9 185 aa5.53□□□□□ -1.52
PTPRF-201ENST00000359947 LRP1Q07954 4544 aaKnown RBP5.51□□□□□ -1.53
PTPRF-201ENST00000359947 MT1XP80297 61 aa5.51□□□□□ -1.53
PTPRF-201ENST00000359947 KRTAP19-8Q3LI54 63 aa5.5□□□□□ -1.53
PTPRF-201ENST00000359947 KRTAP12-4P60329 112 aa5.49□□□□□ -1.53
PTPRF-201ENST00000359947 KRTAP9-8Q9BYQ0 159 aa5.44□□□□□ -1.54
PTPRF-201ENST00000359947 MT1BP07438 61 aa5.42□□□□□ -1.54
PTPRF-201ENST00000359947 HSPG2P98160 4391 aa5.41□□□□□ -1.54
PTPRF-201ENST00000359947 PKHD1P08F94 4074 aa5.4□□□□□ -1.54
PTPRF-201ENST00000359947 LPAP08519 4548 aa5.4□□□□□ -1.55
PTPRF-201ENST00000359947 PKHD1L1Q86WI1 4243 aa5.35□□□□□ -1.55
PTPRF-201ENST00000359947 KRTAP19-4Q3LI73 84 aa5.34□□□□□ -1.55
PTPRF-201ENST00000359947 KRTAP9-3Q9BYQ3 159 aa5.32□□□□□ -1.56
PTPRF-201ENST00000359947 LCE2CQ5TA81 110 aa5.3□□□□□ -1.56
PTPRF-201ENST00000359947 LCE2DQ5TA82 110 aaPredicted RBP5.26□□□□□ -1.57
PTPRF-201ENST00000359947 PKD1P98161 4303 aa5.26□□□□□ -1.57
PTPRF-201ENST00000359947 MT4P47944 62 aa5.21□□□□□ -1.58
PTPRF-201ENST00000359947 LRP2P98164 4655 aa5.2□□□□□ -1.58
PTPRF-201ENST00000359947 KIAA1109Q2LD37 5005 aa5.2□□□□□ -1.58
PTPRF-201ENST00000359947 LCE3DQ9BYE3 92 aa5.18□□□□□ -1.58
PTPRF-201ENST00000359947 KRTAP4-7Q9BYR0 210 aa5.18□□□□□ -1.58
PTPRF-201ENST00000359947 KRTAP9-2Q9BYQ4 174 aa5.14□□□□□ -1.59
PTPRF-201ENST00000359947 KRTAP19-3Q7Z4W3 81 aa5.13□□□□□ -1.59
PTPRF-201ENST00000359947 HERC2O95714 4834 aa5.1□□□□□ -1.59
PTPRF-201ENST00000359947 HYDINQ4G0P3 5121 aa5.1□□□□□ -1.59
PTPRF-201ENST00000359947 RYR2Q92736 4967 aa5.08□□□□□ -1.6
PTPRF-201ENST00000359947 TNXBP22105 4242 aa5.07□□□□□ -1.6
PTPRF-201ENST00000359947 PCLOQ9Y6V0 5065 aa5.03□□□□□ -1.6
PTPRF-201ENST00000359947 LCE3EQ5T5B0 92 aa5.03□□□□□ -1.6
PTPRF-201ENST00000359947 MT1LQ93083 61 aa5□□□□□ -1.61
PTPRF-201ENST00000359947 FLGP20930 4061 aaPredicted RBP4.98□□□□□ -1.61
PTPRF-201ENST00000359947 SPRR5A0A1B0GTR4 108 aa4.98□□□□□ -1.61
PTPRF-201ENST00000359947 MT1EP04732 61 aa4.97□□□□□ -1.61
PTPRF-201ENST00000359947 LOC100996750A0A140TA64 210 aa4.94□□□□□ -1.62
PTPRF-201ENST00000359947 LCE1BQ5T7P3 118 aa4.92□□□□□ -1.62
PTPRF-201ENST00000359947 BIRC6Q9NR09 4857 aa4.9□□□□□ -1.62
PTPRF-201ENST00000359947 KRTAP4-3Q9BYR4 195 aa4.9□□□□□ -1.63
PTPRF-201ENST00000359947 LCE1DQ5T752 114 aa4.88□□□□□ -1.63
PTPRF-201ENST00000359947 KRTAP9-6A0A140TA67 174 aa4.87□□□□□ -1.63
PTPRF-201ENST00000359947 MT1MQ8N339 61 aa4.87□□□□□ -1.63
PTPRF-201ENST00000359947 HERC1Q15751 4861 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms