RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 BSNQ9UPA5 3926 aa6.62□□□□□ -1.35
COL18A1-203ENST00000359759 KRTAP10-4P60372 401 aaPredicted RBP6.57□□□□□ -1.36
COL18A1-203ENST00000359759 VPS13CQ709C8 3753 aa6.47□□□□□ -1.37
COL18A1-203ENST00000359759 CSMD3Q7Z407 3707 aa6.42□□□□□ -1.38
COL18A1-203ENST00000359759 AKAP9Q99996 3911 aa6.35□□□□□ -1.39
COL18A1-203ENST00000359759 DNAH9Q9NYC9 4486 aa6.32□□□□□ -1.4
COL18A1-203ENST00000359759 KRTAP4-1Q9BYQ7 146 aa6.23□□□□□ -1.41
COL18A1-203ENST00000359759 DNAH1Q9P2D7 4330 aa6.22□□□□□ -1.41
COL18A1-203ENST00000359759 KRTAP19-5Q3LI72 72 aa6.21□□□□□ -1.42
COL18A1-203ENST00000359759 ZNF469Q96JG9 3925 aaPredicted RBP6.2□□□□□ -1.42
COL18A1-203ENST00000359759 MT1HP80294 61 aa6.19□□□□□ -1.42
COL18A1-203ENST00000359759 KRTAP10-7P60409 375 aaPredicted RBP6.15□□□□□ -1.42
COL18A1-203ENST00000359759 SPRR2FQ96RM1 72 aa6.14□□□□□ -1.43
COL18A1-203ENST00000359759 LCE3CQ5T5A8 94 aa6.11□□□□□ -1.43
COL18A1-203ENST00000359759 DNAH2Q9P225 4427 aa6.09□□□□□ -1.43
COL18A1-203ENST00000359759 MT2AP02795 61 aa6.09□□□□□ -1.44
COL18A1-203ENST00000359759 DNAH5Q8TE73 4624 aa6.08□□□□□ -1.44
COL18A1-203ENST00000359759 DNAH10Q8IVF4 4471 aa6.03□□□□□ -1.44
COL18A1-203ENST00000359759 SPRR2GQ9BYE4 73 aa6.02□□□□□ -1.45
COL18A1-203ENST00000359759 MT1FP04733 61 aa5.99□□□□□ -1.45
COL18A1-203ENST00000359759 DNAH8Q96JB1 4490 aa5.99□□□□□ -1.45
COL18A1-203ENST00000359759 DNHD1Q96M86 4753 aa5.97□□□□□ -1.45
COL18A1-203ENST00000359759 DNAH11Q96DT5 4516 aa5.93□□□□□ -1.46
COL18A1-203ENST00000359759 PLECQ15149 4684 aaKnown RBP5.93□□□□□ -1.46
COL18A1-203ENST00000359759 LCE3BQ5TA77 95 aa5.92□□□□□ -1.46
COL18A1-203ENST00000359759 FAT2Q9NYQ8 4349 aa5.9□□□□□ -1.46
COL18A1-203ENST00000359759 DNAH3Q8TD57 4116 aa5.87□□□□□ -1.47
COL18A1-203ENST00000359759 SPRR2EP22531 72 aa5.82□□□□□ -1.48
COL18A1-203ENST00000359759 SPRR2BP35325 72 aa5.82□□□□□ -1.48
COL18A1-203ENST00000359759 SPRR2AP35326 72 aa5.82□□□□□ -1.48
COL18A1-203ENST00000359759 LRP1BQ9NZR2 4599 aa5.81□□□□□ -1.48
COL18A1-203ENST00000359759 KRTAP17-1Q9BYP8 105 aa5.8□□□□□ -1.48
COL18A1-203ENST00000359759 ANK2Q01484 3957 aa5.79□□□□□ -1.48
COL18A1-203ENST00000359759 VPS13DQ5THJ4 4388 aa5.78□□□□□ -1.48
COL18A1-203ENST00000359759 PRKDCP78527 4128 aaKnown RBP5.78□□□□□ -1.48
COL18A1-203ENST00000359759 DNAH17Q9UFH2 4485 aa5.76□□□□□ -1.49
COL18A1-203ENST00000359759 STARD9Q9P2P6 4700 aa5.75□□□□□ -1.49
COL18A1-203ENST00000359759 DYNC1H1Q14204 4646 aaKnown RBP5.74□□□□□ -1.49
COL18A1-203ENST00000359759 MT1GP13640 62 aa5.73□□□□□ -1.49
COL18A1-203ENST00000359759 KRTAP12-4P60329 112 aa5.73□□□□□ -1.49
COL18A1-203ENST00000359759 VPS13BQ7Z7G8 4022 aa5.73□□□□□ -1.49
COL18A1-203ENST00000359759 KMT2AQ03164 3969 aa5.71□□□□□ -1.49
COL18A1-203ENST00000359759 FAT1Q14517 4588 aa5.7□□□□□ -1.5
COL18A1-203ENST00000359759 FRAS1Q86XX4 4008 aa5.69□□□□□ -1.5
COL18A1-203ENST00000359759 DYNC2H1Q8NCM8 4307 aaKnown RBP5.69□□□□□ -1.5
COL18A1-203ENST00000359759 RYR1P21817 5038 aa5.68□□□□□ -1.5
COL18A1-203ENST00000359759 SACSQ9NZJ4 4579 aa5.63□□□□□ -1.51
COL18A1-203ENST00000359759 CMYA5Q8N3K9 4069 aa5.63□□□□□ -1.51
COL18A1-203ENST00000359759 SPRR2DP22532 72 aa5.63□□□□□ -1.51
COL18A1-203ENST00000359759 DNAH7Q8WXX0 4024 aa5.56□□□□□ -1.52
COL18A1-203ENST00000359759 LYSTQ99698 3801 aa5.55□□□□□ -1.52
COL18A1-203ENST00000359759 DNAH6Q9C0G6 4158 aa5.54□□□□□ -1.52
COL18A1-203ENST00000359759 MT1XP80297 61 aa5.52□□□□□ -1.53
COL18A1-203ENST00000359759 KRTAP19-4Q3LI73 84 aa5.51□□□□□ -1.53
COL18A1-203ENST00000359759 LCE2BO14633 110 aa5.5□□□□□ -1.53
COL18A1-203ENST00000359759 KRTAP19-1Q8IUB9 90 aa5.48□□□□□ -1.53
COL18A1-203ENST00000359759 KRTAP4-8A0A0G2JLE6 195 aa5.48□□□□□ -1.53
COL18A1-203ENST00000359759 KRTAP4-8Q9BYQ9 185 aa5.48□□□□□ -1.53
COL18A1-203ENST00000359759 LCE3DQ9BYE3 92 aa5.47□□□□□ -1.53
COL18A1-203ENST00000359759 RYR3Q15413 4870 aa5.45□□□□□ -1.54
COL18A1-203ENST00000359759 KRTAP19-8Q3LI54 63 aa5.45□□□□□ -1.54
COL18A1-203ENST00000359759 APOBP04114 4563 aaKnown RBP5.44□□□□□ -1.54
COL18A1-203ENST00000359759 RYR2Q92736 4967 aa5.44□□□□□ -1.54
COL18A1-203ENST00000359759 KIAA1109Q2LD37 5005 aa5.43□□□□□ -1.54
COL18A1-203ENST00000359759 HERC1Q15751 4861 aa5.42□□□□□ -1.54
COL18A1-203ENST00000359759 BIRC6Q9NR09 4857 aa5.4□□□□□ -1.55
COL18A1-203ENST00000359759 FAT3Q8TDW7 4589 aa5.39□□□□□ -1.55
COL18A1-203ENST00000359759 LCE3EQ5T5B0 92 aa5.35□□□□□ -1.55
COL18A1-203ENST00000359759 MT1BP07438 61 aa5.34□□□□□ -1.55
COL18A1-203ENST00000359759 KRTAP9-2Q9BYQ4 174 aa5.31□□□□□ -1.56
COL18A1-203ENST00000359759 PKHD1L1Q86WI1 4243 aa5.29□□□□□ -1.56
COL18A1-203ENST00000359759 KRTAP4-7Q9BYR0 210 aa5.28□□□□□ -1.56
COL18A1-203ENST00000359759 HSPG2P98160 4391 aa5.27□□□□□ -1.57
COL18A1-203ENST00000359759 SPRR5A0A1B0GTR4 108 aa5.26□□□□□ -1.57
COL18A1-203ENST00000359759 LCE2CQ5TA81 110 aa5.22□□□□□ -1.57
COL18A1-203ENST00000359759 LRP1Q07954 4544 aaKnown RBP5.22□□□□□ -1.57
COL18A1-203ENST00000359759 KRTAP9-8Q9BYQ0 159 aa5.21□□□□□ -1.58
COL18A1-203ENST00000359759 HECTD4Q9Y4D8 3996 aa5.2□□□□□ -1.58
COL18A1-203ENST00000359759 PCLOQ9Y6V0 5065 aa5.18□□□□□ -1.58
COL18A1-203ENST00000359759 LCE2DQ5TA82 110 aaPredicted RBP5.17□□□□□ -1.58
COL18A1-203ENST00000359759 HERC2O95714 4834 aa5.15□□□□□ -1.58
COL18A1-203ENST00000359759 PRM1P04553 51 aa5.15□□□□□ -1.58
COL18A1-203ENST00000359759 KRTAP9-6A0A140TA67 174 aa5.13□□□□□ -1.59
COL18A1-203ENST00000359759 MYCBP2O75592 4640 aa5.12□□□□□ -1.59
COL18A1-203ENST00000359759 KRTAP9-3Q9BYQ3 159 aa5.11□□□□□ -1.59
COL18A1-203ENST00000359759 LPAP08519 4548 aa5.11□□□□□ -1.59
COL18A1-203ENST00000359759 PKHD1P08F94 4074 aa5.1□□□□□ -1.59
COL18A1-203ENST00000359759 KRTAP19-3Q7Z4W3 81 aa5.09□□□□□ -1.6
COL18A1-203ENST00000359759 MT4P47944 62 aa5.08□□□□□ -1.6
COL18A1-203ENST00000359759 MT1LQ93083 61 aa5.05□□□□□ -1.6
COL18A1-203ENST00000359759 PKD1P98161 4303 aa5.04□□□□□ -1.6
COL18A1-203ENST00000359759 LOC100996750A0A140TA64 210 aa5.04□□□□□ -1.6
COL18A1-203ENST00000359759 LCE1BQ5T7P3 118 aa4.98□□□□□ -1.61
COL18A1-203ENST00000359759 MT1EP04732 61 aa4.97□□□□□ -1.61
COL18A1-203ENST00000359759 HYDINQ4G0P3 5121 aa4.95□□□□□ -1.62
COL18A1-203ENST00000359759 LCE1DQ5T752 114 aa4.91□□□□□ -1.62
COL18A1-203ENST00000359759 KRTAP4-3Q9BYR4 195 aa4.91□□□□□ -1.62
COL18A1-203ENST00000359759 MT3P25713 68 aa4.9□□□□□ -1.63
COL18A1-203ENST00000359759 MT1MQ8N339 61 aa4.86□□□□□ -1.63
COL18A1-203ENST00000359759 KRTAP20-1Q3LI63 56 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms