RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 KRTAP12-3P60328 96 aa4.32□□□□□ -1.72
CHD3-202ENST00000358181 KRTAP23-1A1A580 65 aa4.31□□□□□ -1.72
CHD3-202ENST00000358181 LCE3AQ5TA76 89 aa4.31□□□□□ -1.72
CHD3-202ENST00000358181 MT1HL1P0DM35 61 aa4.3□□□□□ -1.72
CHD3-202ENST00000358181 ALMS1Q8TCU4 4167 aa4.26□□□□□ -1.73
CHD3-202ENST00000358181 CMYA5Q8N3K9 4069 aa4.25□□□□□ -1.73
CHD3-202ENST00000358181 ANK2Q01484 3957 aa4.23□□□□□ -1.73
CHD3-202ENST00000358181 LYSTQ99698 3801 aa4.22□□□□□ -1.73
CHD3-202ENST00000358181 DNAH9Q9NYC9 4486 aa4.19□□□□□ -1.74
CHD3-202ENST00000358181 DNAH10Q8IVF4 4471 aa4.18□□□□□ -1.74
CHD3-202ENST00000358181 KRTAP3-3Q9BYR6 98 aa4.16□□□□□ -1.74
CHD3-202ENST00000358181 DNAH1Q9P2D7 4330 aa4.14□□□□□ -1.75
CHD3-202ENST00000358181 SPRR2FQ96RM1 72 aa4.13□□□□□ -1.75
CHD3-202ENST00000358181 KRTAP10-4P60372 401 aaPredicted RBP4.11□□□□□ -1.75
CHD3-202ENST00000358181 KRTAP3-2Q9BYR7 98 aa4.1□□□□□ -1.75
CHD3-202ENST00000358181 DNAH3Q8TD57 4116 aa4.09□□□□□ -1.75
CHD3-202ENST00000358181 KMT2AQ03164 3969 aa4.08□□□□□ -1.76
CHD3-202ENST00000358181 DNAH2Q9P225 4427 aa4.07□□□□□ -1.76
CHD3-202ENST00000358181 PLECQ15149 4684 aaKnown RBP4.02□□□□□ -1.77
CHD3-202ENST00000358181 DNAH7Q8WXX0 4024 aa4□□□□□ -1.77
CHD3-202ENST00000358181 SPRR2EP22531 72 aa3.99□□□□□ -1.77
CHD3-202ENST00000358181 SPRR2BP35325 72 aa3.99□□□□□ -1.77
CHD3-202ENST00000358181 SPRR2AP35326 72 aa3.99□□□□□ -1.77
CHD3-202ENST00000358181 PRKDCP78527 4128 aaKnown RBP3.96□□□□□ -1.78
CHD3-202ENST00000358181 DNAH5Q8TE73 4624 aa3.96□□□□□ -1.78
CHD3-202ENST00000358181 DNAH11Q96DT5 4516 aa3.95□□□□□ -1.78
CHD3-202ENST00000358181 VPS13BQ7Z7G8 4022 aa3.95□□□□□ -1.78
CHD3-202ENST00000358181 KRTAP4-1Q9BYQ7 146 aa3.95□□□□□ -1.78
CHD3-202ENST00000358181 DNAH8Q96JB1 4490 aa3.94□□□□□ -1.78
CHD3-202ENST00000358181 STARD9Q9P2P6 4700 aa3.92□□□□□ -1.78
CHD3-202ENST00000358181 FAT2Q9NYQ8 4349 aa3.89□□□□□ -1.79
CHD3-202ENST00000358181 LCE3BQ5TA77 95 aa3.85□□□□□ -1.79
CHD3-202ENST00000358181 SPRR2DP22532 72 aa3.85□□□□□ -1.79
CHD3-202ENST00000358181 LRP1BQ9NZR2 4599 aa3.85□□□□□ -1.79
CHD3-202ENST00000358181 MT1HP80294 61 aa3.85□□□□□ -1.79
CHD3-202ENST00000358181 VPS13DQ5THJ4 4388 aa3.84□□□□□ -1.79
CHD3-202ENST00000358181 DNAH17Q9UFH2 4485 aa3.84□□□□□ -1.79
CHD3-202ENST00000358181 DNAH6Q9C0G6 4158 aa3.83□□□□□ -1.8
CHD3-202ENST00000358181 FAT1Q14517 4588 aa3.82□□□□□ -1.8
CHD3-202ENST00000358181 KRTAP19-5Q3LI72 72 aa3.82□□□□□ -1.8
CHD3-202ENST00000358181 HECTD4Q9Y4D8 3996 aa3.8□□□□□ -1.8
CHD3-202ENST00000358181 DNHD1Q96M86 4753 aa3.78□□□□□ -1.8
CHD3-202ENST00000358181 SPRR5A0A1B0GTR4 108 aa3.77□□□□□ -1.81
CHD3-202ENST00000358181 DYNC2H1Q8NCM8 4307 aaKnown RBP3.77□□□□□ -1.81
CHD3-202ENST00000358181 SACSQ9NZJ4 4579 aa3.75□□□□□ -1.81
CHD3-202ENST00000358181 MT2AP02795 61 aa3.73□□□□□ -1.81
CHD3-202ENST00000358181 DYNC1H1Q14204 4646 aaKnown RBP3.72□□□□□ -1.81
CHD3-202ENST00000358181 MT1FP04733 61 aa3.71□□□□□ -1.82
CHD3-202ENST00000358181 LCE2BO14633 110 aa3.7□□□□□ -1.82
CHD3-202ENST00000358181 LCE3CQ5T5A8 94 aa3.67□□□□□ -1.82
CHD3-202ENST00000358181 KRTAP17-1Q9BYP8 105 aa3.65□□□□□ -1.83
CHD3-202ENST00000358181 KRTAP12-4P60329 112 aa3.64□□□□□ -1.83
CHD3-202ENST00000358181 MT1GP13640 62 aa3.63□□□□□ -1.83
CHD3-202ENST00000358181 RYR1P21817 5038 aa3.63□□□□□ -1.83
CHD3-202ENST00000358181 APOBP04114 4563 aaKnown RBP3.62□□□□□ -1.83
CHD3-202ENST00000358181 FAT3Q8TDW7 4589 aa3.61□□□□□ -1.83
CHD3-202ENST00000358181 LPAP08519 4548 aa3.59□□□□□ -1.83
CHD3-202ENST00000358181 LCE2CQ5TA81 110 aa3.59□□□□□ -1.84
CHD3-202ENST00000358181 MYCBP2O75592 4640 aa3.58□□□□□ -1.84
CHD3-202ENST00000358181 MT4P47944 62 aa3.55□□□□□ -1.84
CHD3-202ENST00000358181 SPRR2GQ9BYE4 73 aa3.55□□□□□ -1.84
CHD3-202ENST00000358181 LCE2DQ5TA82 110 aaPredicted RBP3.55□□□□□ -1.84
CHD3-202ENST00000358181 LRP1Q07954 4544 aaKnown RBP3.54□□□□□ -1.84
CHD3-202ENST00000358181 PKHD1P08F94 4074 aa3.52□□□□□ -1.85
CHD3-202ENST00000358181 PKD1P98161 4303 aa3.5□□□□□ -1.85
CHD3-202ENST00000358181 HSPG2P98160 4391 aa3.5□□□□□ -1.85
CHD3-202ENST00000358181 LCE3EQ5T5B0 92 aa3.49□□□□□ -1.85
CHD3-202ENST00000358181 LCE1BQ5T7P3 118 aa3.45□□□□□ -1.86
CHD3-202ENST00000358181 KRTAP4-8A0A0G2JLE6 195 aa3.43□□□□□ -1.86
CHD3-202ENST00000358181 KRTAP4-8Q9BYQ9 185 aa3.43□□□□□ -1.86
CHD3-202ENST00000358181 RYR3Q15413 4870 aa3.42□□□□□ -1.86
CHD3-202ENST00000358181 LCE3DQ9BYE3 92 aa3.41□□□□□ -1.86
CHD3-202ENST00000358181 PKHD1L1Q86WI1 4243 aa3.4□□□□□ -1.86
CHD3-202ENST00000358181 HYDINQ4G0P3 5121 aa3.4□□□□□ -1.87
CHD3-202ENST00000358181 TNXBP22105 4242 aa3.39□□□□□ -1.87
CHD3-202ENST00000358181 FLGP20930 4061 aaPredicted RBP3.38□□□□□ -1.87
CHD3-202ENST00000358181 LCE1DQ5T752 114 aa3.36□□□□□ -1.87
CHD3-202ENST00000358181 KRTAP19-1Q8IUB9 90 aa3.35□□□□□ -1.87
CHD3-202ENST00000358181 MT1XP80297 61 aa3.34□□□□□ -1.88
CHD3-202ENST00000358181 LRP2P98164 4655 aa3.29□□□□□ -1.88
CHD3-202ENST00000358181 KRTAP9-8Q9BYQ0 159 aa3.29□□□□□ -1.88
CHD3-202ENST00000358181 LCE5AQ5TCM9 118 aa3.28□□□□□ -1.88
CHD3-202ENST00000358181 MT1BP07438 61 aa3.28□□□□□ -1.89
CHD3-202ENST00000358181 KRTAP4-7Q9BYR0 210 aa3.26□□□□□ -1.89
CHD3-202ENST00000358181 KRTAP19-8Q3LI54 63 aa3.23□□□□□ -1.89
CHD3-202ENST00000358181 PRM1P04553 51 aa3.19□□□□□ -1.9
CHD3-202ENST00000358181 KRTAP9-3Q9BYQ3 159 aa3.19□□□□□ -1.9
CHD3-202ENST00000358181 LCE1CQ5T751 118 aa3.19□□□□□ -1.9
CHD3-202ENST00000358181 LCE1EQ5T753 118 aa3.19□□□□□ -1.9
CHD3-202ENST00000358181 LCE1FQ5T754 118 aa3.19□□□□□ -1.9
CHD3-202ENST00000358181 LCE1AQ5T7P2 110 aa3.19□□□□□ -1.9
CHD3-202ENST00000358181 KIAA1109Q2LD37 5005 aa3.18□□□□□ -1.9
CHD3-202ENST00000358181 KRTAP9-2Q9BYQ4 174 aa3.14□□□□□ -1.91
CHD3-202ENST00000358181 LOC100996750A0A140TA64 210 aa3.12□□□□□ -1.91
CHD3-202ENST00000358181 HERC2O95714 4834 aa3.11□□□□□ -1.91
CHD3-202ENST00000358181 KMT2CQ8NEZ4 4911 aaKnown RBP3.11□□□□□ -1.91
CHD3-202ENST00000358181 KRTAP19-4Q3LI73 84 aa3.11□□□□□ -1.91
CHD3-202ENST00000358181 RYR2Q92736 4967 aa3.11□□□□□ -1.91
CHD3-202ENST00000358181 KRTAP4-3Q9BYR4 195 aa3.09□□□□□ -1.92
CHD3-202ENST00000358181 MT3P25713 68 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms