RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 KRTAP23-1A1A580 65 aa7.61□□□□□ -1.19
COL18A1-202ENST00000355480 KRTAP8-1Q8IUC2 63 aa7.56□□□□□ -1.2
COL18A1-202ENST00000355480 AKAP9Q99996 3911 aa7.56□□□□□ -1.2
COL18A1-202ENST00000355480 CSMD3Q7Z407 3707 aa7.55□□□□□ -1.2
COL18A1-202ENST00000355480 DNAH9Q9NYC9 4486 aa7.44□□□□□ -1.22
COL18A1-202ENST00000355480 KRTAP10-5P60370 271 aa7.43□□□□□ -1.22
COL18A1-202ENST00000355480 ZNF469Q96JG9 3925 aaPredicted RBP7.36□□□□□ -1.23
COL18A1-202ENST00000355480 DNAH1Q9P2D7 4330 aa7.35□□□□□ -1.23
COL18A1-202ENST00000355480 MT1HP80294 61 aa7.28□□□□□ -1.24
COL18A1-202ENST00000355480 KRTAP4-1Q9BYQ7 146 aa7.28□□□□□ -1.24
COL18A1-202ENST00000355480 DNAH5Q8TE73 4624 aa7.28□□□□□ -1.24
COL18A1-202ENST00000355480 DNAH10Q8IVF4 4471 aa7.19□□□□□ -1.26
COL18A1-202ENST00000355480 PLECQ15149 4684 aaKnown RBP7.19□□□□□ -1.26
COL18A1-202ENST00000355480 MT2AP02795 61 aa7.17□□□□□ -1.26
COL18A1-202ENST00000355480 DNAH17Q9UFH2 4485 aa7.09□□□□□ -1.28
COL18A1-202ENST00000355480 DNAH11Q96DT5 4516 aa7.08□□□□□ -1.28
COL18A1-202ENST00000355480 DNAH2Q9P225 4427 aa7.07□□□□□ -1.28
COL18A1-202ENST00000355480 SPRR2GQ9BYE4 73 aa7.06□□□□□ -1.28
COL18A1-202ENST00000355480 DNAH3Q8TD57 4116 aa7.04□□□□□ -1.28
COL18A1-202ENST00000355480 VPS13DQ5THJ4 4388 aa7.04□□□□□ -1.28
COL18A1-202ENST00000355480 SPRR2FQ96RM1 72 aa7.04□□□□□ -1.28
COL18A1-202ENST00000355480 MT1FP04733 61 aa7□□□□□ -1.29
COL18A1-202ENST00000355480 KRTAP10-7P60409 375 aaPredicted RBP6.99□□□□□ -1.29
COL18A1-202ENST00000355480 KRTAP19-5Q3LI72 72 aa6.93□□□□□ -1.3
COL18A1-202ENST00000355480 FAT1Q14517 4588 aa6.93□□□□□ -1.3
COL18A1-202ENST00000355480 STARD9Q9P2P6 4700 aa6.89□□□□□ -1.31
COL18A1-202ENST00000355480 DNAH8Q96JB1 4490 aa6.89□□□□□ -1.31
COL18A1-202ENST00000355480 ANK2Q01484 3957 aa6.89□□□□□ -1.31
COL18A1-202ENST00000355480 LRP1BQ9NZR2 4599 aa6.88□□□□□ -1.31
COL18A1-202ENST00000355480 FAT2Q9NYQ8 4349 aa6.85□□□□□ -1.31
COL18A1-202ENST00000355480 DYNC1H1Q14204 4646 aaKnown RBP6.85□□□□□ -1.31
COL18A1-202ENST00000355480 DNHD1Q96M86 4753 aa6.83□□□□□ -1.32
COL18A1-202ENST00000355480 DYNC2H1Q8NCM8 4307 aaKnown RBP6.82□□□□□ -1.32
COL18A1-202ENST00000355480 SACSQ9NZJ4 4579 aa6.81□□□□□ -1.32
COL18A1-202ENST00000355480 LCE3CQ5T5A8 94 aa6.8□□□□□ -1.32
COL18A1-202ENST00000355480 RYR1P21817 5038 aa6.76□□□□□ -1.33
COL18A1-202ENST00000355480 KMT2AQ03164 3969 aa6.74□□□□□ -1.33
COL18A1-202ENST00000355480 FRAS1Q86XX4 4008 aa6.7□□□□□ -1.34
COL18A1-202ENST00000355480 VPS13BQ7Z7G8 4022 aa6.67□□□□□ -1.34
COL18A1-202ENST00000355480 PRKDCP78527 4128 aaKnown RBP6.64□□□□□ -1.35
COL18A1-202ENST00000355480 SPRR2EP22531 72 aa6.62□□□□□ -1.35
COL18A1-202ENST00000355480 SPRR2BP35325 72 aa6.62□□□□□ -1.35
COL18A1-202ENST00000355480 SPRR2AP35326 72 aa6.62□□□□□ -1.35
COL18A1-202ENST00000355480 KRTAP19-4Q3LI73 84 aa6.6□□□□□ -1.35
COL18A1-202ENST00000355480 CMYA5Q8N3K9 4069 aa6.6□□□□□ -1.35
COL18A1-202ENST00000355480 APOBP04114 4563 aaKnown RBP6.58□□□□□ -1.36
COL18A1-202ENST00000355480 DNAH7Q8WXX0 4024 aa6.54□□□□□ -1.36
COL18A1-202ENST00000355480 KRTAP19-8Q3LI54 63 aa6.52□□□□□ -1.37
COL18A1-202ENST00000355480 KRTAP19-1Q8IUB9 90 aa6.49□□□□□ -1.37
COL18A1-202ENST00000355480 LYSTQ99698 3801 aa6.49□□□□□ -1.37
COL18A1-202ENST00000355480 DNAH6Q9C0G6 4158 aa6.48□□□□□ -1.37
COL18A1-202ENST00000355480 KRTAP17-1Q9BYP8 105 aa6.44□□□□□ -1.38
COL18A1-202ENST00000355480 LCE3BQ5TA77 95 aa6.43□□□□□ -1.38
COL18A1-202ENST00000355480 RYR3Q15413 4870 aa6.43□□□□□ -1.38
COL18A1-202ENST00000355480 SPRR2DP22532 72 aa6.41□□□□□ -1.38
COL18A1-202ENST00000355480 MT1XP80297 61 aa6.38□□□□□ -1.39
COL18A1-202ENST00000355480 HECTD4Q9Y4D8 3996 aa6.38□□□□□ -1.39
COL18A1-202ENST00000355480 MT1GP13640 62 aa6.35□□□□□ -1.39
COL18A1-202ENST00000355480 LCE2BO14633 110 aa6.35□□□□□ -1.39
COL18A1-202ENST00000355480 LRP1Q07954 4544 aaKnown RBP6.32□□□□□ -1.4
COL18A1-202ENST00000355480 FAT3Q8TDW7 4589 aa6.32□□□□□ -1.4
COL18A1-202ENST00000355480 MT1BP07438 61 aa6.3□□□□□ -1.4
COL18A1-202ENST00000355480 MYCBP2O75592 4640 aa6.27□□□□□ -1.41
COL18A1-202ENST00000355480 KRTAP12-4P60329 112 aa6.27□□□□□ -1.41
COL18A1-202ENST00000355480 KRTAP9-8Q9BYQ0 159 aa6.26□□□□□ -1.41
COL18A1-202ENST00000355480 KRTAP4-8A0A0G2JLE6 195 aa6.22□□□□□ -1.41
COL18A1-202ENST00000355480 KRTAP4-8Q9BYQ9 185 aa6.22□□□□□ -1.41
COL18A1-202ENST00000355480 KIAA1109Q2LD37 5005 aa6.17□□□□□ -1.42
COL18A1-202ENST00000355480 KRTAP9-3Q9BYQ3 159 aa6.14□□□□□ -1.43
COL18A1-202ENST00000355480 RYR2Q92736 4967 aa6.11□□□□□ -1.43
COL18A1-202ENST00000355480 HERC1Q15751 4861 aa6.11□□□□□ -1.43
COL18A1-202ENST00000355480 LCE2CQ5TA81 110 aa6.07□□□□□ -1.44
COL18A1-202ENST00000355480 HSPG2P98160 4391 aa6.05□□□□□ -1.44
COL18A1-202ENST00000355480 LCE3DQ9BYE3 92 aa6.03□□□□□ -1.44
COL18A1-202ENST00000355480 LPAP08519 4548 aa5.99□□□□□ -1.45
COL18A1-202ENST00000355480 HYDINQ4G0P3 5121 aa5.98□□□□□ -1.45
COL18A1-202ENST00000355480 PKD1P98161 4303 aa5.97□□□□□ -1.45
COL18A1-202ENST00000355480 KRTAP19-3Q7Z4W3 81 aa5.95□□□□□ -1.46
COL18A1-202ENST00000355480 HERC2O95714 4834 aa5.92□□□□□ -1.46
COL18A1-202ENST00000355480 LCE3EQ5T5B0 92 aa5.92□□□□□ -1.46
COL18A1-202ENST00000355480 PCLOQ9Y6V0 5065 aa5.89□□□□□ -1.47
COL18A1-202ENST00000355480 PKHD1P08F94 4074 aa5.88□□□□□ -1.47
COL18A1-202ENST00000355480 LCE2DQ5TA82 110 aaPredicted RBP5.87□□□□□ -1.47
COL18A1-202ENST00000355480 SPRR5A0A1B0GTR4 108 aa5.87□□□□□ -1.47
COL18A1-202ENST00000355480 BIRC6Q9NR09 4857 aa5.86□□□□□ -1.47
COL18A1-202ENST00000355480 KRTAP4-7Q9BYR0 210 aa5.84□□□□□ -1.47
COL18A1-202ENST00000355480 PKHD1L1Q86WI1 4243 aa5.83□□□□□ -1.48
COL18A1-202ENST00000355480 MT1LQ93083 61 aa5.83□□□□□ -1.48
COL18A1-202ENST00000355480 LRP2P98164 4655 aa5.83□□□□□ -1.48
COL18A1-202ENST00000355480 TNXBP22105 4242 aa5.82□□□□□ -1.48
COL18A1-202ENST00000355480 MT1EP04732 61 aa5.79□□□□□ -1.48
COL18A1-202ENST00000355480 MT4P47944 62 aa5.7□□□□□ -1.5
COL18A1-202ENST00000355480 KRTAP19-2Q3LHN2 52 aa5.68□□□□□ -1.5
COL18A1-202ENST00000355480 EPPK1P58107 5090 aaKnown RBP5.65□□□□□ -1.51
COL18A1-202ENST00000355480 MT1MQ8N339 61 aa5.64□□□□□ -1.51
COL18A1-202ENST00000355480 MT3P25713 68 aa5.63□□□□□ -1.51
COL18A1-202ENST00000355480 KMT2CQ8NEZ4 4911 aaKnown RBP5.61□□□□□ -1.51
COL18A1-202ENST00000355480 KRTAP9-2Q9BYQ4 174 aa5.61□□□□□ -1.51
COL18A1-202ENST00000355480 KRTAP19-6Q3LI70 58 aa5.59□□□□□ -1.51
COL18A1-202ENST00000355480 LOC100996750A0A140TA64 210 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms