RNA–Protein interactions for RNA: ENST00000348513.10

SMARCE1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCE1, Length 5,840 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-202ENST00000348513 LORP23490 312 aaPredicted RBP4.72□□□□□ -1.65
SMARCE1-202ENST00000348513 ZNF469Q96JG9 3925 aaPredicted RBP4.69□□□□□ -1.66
SMARCE1-202ENST00000348513 AKAP9Q99996 3911 aa4.69□□□□□ -1.66
SMARCE1-202ENST00000348513 LCE3AQ5TA76 89 aa4.67□□□□□ -1.66
SMARCE1-202ENST00000348513 KRTAP12-3P60328 96 aa4.67□□□□□ -1.66
SMARCE1-202ENST00000348513 DNAH5Q8TE73 4624 aa4.63□□□□□ -1.67
SMARCE1-202ENST00000348513 DNAH1Q9P2D7 4330 aa4.63□□□□□ -1.67
SMARCE1-202ENST00000348513 PLECQ15149 4684 aaKnown RBP4.55□□□□□ -1.68
SMARCE1-202ENST00000348513 KRTAP4-1Q9BYQ7 146 aa4.54□□□□□ -1.68
SMARCE1-202ENST00000348513 KRTAP8-1Q8IUC2 63 aa4.53□□□□□ -1.68
SMARCE1-202ENST00000348513 DNAH10Q8IVF4 4471 aa4.51□□□□□ -1.69
SMARCE1-202ENST00000348513 DNAH11Q96DT5 4516 aa4.51□□□□□ -1.69
SMARCE1-202ENST00000348513 MT1HP80294 61 aa4.46□□□□□ -1.69
SMARCE1-202ENST00000348513 DNHD1Q96M86 4753 aa4.44□□□□□ -1.7
SMARCE1-202ENST00000348513 DNAH2Q9P225 4427 aa4.43□□□□□ -1.7
SMARCE1-202ENST00000348513 KRTAP10-5P60370 271 aa4.43□□□□□ -1.7
SMARCE1-202ENST00000348513 VPS13DQ5THJ4 4388 aa4.43□□□□□ -1.7
SMARCE1-202ENST00000348513 DNAH17Q9UFH2 4485 aa4.42□□□□□ -1.7
SMARCE1-202ENST00000348513 LRP1BQ9NZR2 4599 aa4.39□□□□□ -1.71
SMARCE1-202ENST00000348513 DYNC1H1Q14204 4646 aaKnown RBP4.38□□□□□ -1.71
SMARCE1-202ENST00000348513 MT2AP02795 61 aa4.37□□□□□ -1.71
SMARCE1-202ENST00000348513 STARD9Q9P2P6 4700 aa4.37□□□□□ -1.71
SMARCE1-202ENST00000348513 DNAH3Q8TD57 4116 aa4.35□□□□□ -1.71
SMARCE1-202ENST00000348513 FAT1Q14517 4588 aa4.35□□□□□ -1.71
SMARCE1-202ENST00000348513 FAT2Q9NYQ8 4349 aa4.35□□□□□ -1.71
SMARCE1-202ENST00000348513 SPRR5A0A1B0GTR4 108 aa4.35□□□□□ -1.71
SMARCE1-202ENST00000348513 ANK2Q01484 3957 aa4.31□□□□□ -1.72
SMARCE1-202ENST00000348513 MT1FP04733 61 aa4.3□□□□□ -1.72
SMARCE1-202ENST00000348513 RYR1P21817 5038 aa4.29□□□□□ -1.72
SMARCE1-202ENST00000348513 DNAH8Q96JB1 4490 aa4.29□□□□□ -1.72
SMARCE1-202ENST00000348513 DYNC2H1Q8NCM8 4307 aaKnown RBP4.29□□□□□ -1.72
SMARCE1-202ENST00000348513 KMT2AQ03164 3969 aa4.28□□□□□ -1.72
SMARCE1-202ENST00000348513 PRKDCP78527 4128 aaKnown RBP4.27□□□□□ -1.73
SMARCE1-202ENST00000348513 SACSQ9NZJ4 4579 aa4.27□□□□□ -1.73
SMARCE1-202ENST00000348513 VPS13BQ7Z7G8 4022 aa4.27□□□□□ -1.73
SMARCE1-202ENST00000348513 SPRR2FQ96RM1 72 aa4.25□□□□□ -1.73
SMARCE1-202ENST00000348513 SPRR2GQ9BYE4 73 aa4.25□□□□□ -1.73
SMARCE1-202ENST00000348513 KRTAP19-5Q3LI72 72 aa4.21□□□□□ -1.73
SMARCE1-202ENST00000348513 KRTAP10-7P60409 375 aaPredicted RBP4.21□□□□□ -1.74
SMARCE1-202ENST00000348513 LYSTQ99698 3801 aa4.2□□□□□ -1.74
SMARCE1-202ENST00000348513 APOBP04114 4563 aaKnown RBP4.18□□□□□ -1.74
SMARCE1-202ENST00000348513 FRAS1Q86XX4 4008 aa4.15□□□□□ -1.75
SMARCE1-202ENST00000348513 KRTAP17-1Q9BYP8 105 aa4.15□□□□□ -1.75
SMARCE1-202ENST00000348513 LCE3CQ5T5A8 94 aa4.14□□□□□ -1.75
SMARCE1-202ENST00000348513 CMYA5Q8N3K9 4069 aa4.12□□□□□ -1.75
SMARCE1-202ENST00000348513 RYR3Q15413 4870 aa4.1□□□□□ -1.75
SMARCE1-202ENST00000348513 DNAH7Q8WXX0 4024 aa4.09□□□□□ -1.75
SMARCE1-202ENST00000348513 MYCBP2O75592 4640 aa4.04□□□□□ -1.76
SMARCE1-202ENST00000348513 DNAH6Q9C0G6 4158 aa4.04□□□□□ -1.76
SMARCE1-202ENST00000348513 SPRR2EP22531 72 aa4.03□□□□□ -1.76
SMARCE1-202ENST00000348513 SPRR2BP35325 72 aa4.03□□□□□ -1.76
SMARCE1-202ENST00000348513 SPRR2AP35326 72 aa4.03□□□□□ -1.76
SMARCE1-202ENST00000348513 FAT3Q8TDW7 4589 aa4.02□□□□□ -1.77
SMARCE1-202ENST00000348513 KRTAP12-4P60329 112 aa4.01□□□□□ -1.77
SMARCE1-202ENST00000348513 LRP1Q07954 4544 aaKnown RBP3.98□□□□□ -1.77
SMARCE1-202ENST00000348513 KRTAP19-1Q8IUB9 90 aa3.97□□□□□ -1.77
SMARCE1-202ENST00000348513 HECTD4Q9Y4D8 3996 aa3.97□□□□□ -1.77
SMARCE1-202ENST00000348513 KIAA1109Q2LD37 5005 aa3.93□□□□□ -1.78
SMARCE1-202ENST00000348513 KRTAP19-8Q3LI54 63 aa3.92□□□□□ -1.78
SMARCE1-202ENST00000348513 SPRR2DP22532 72 aa3.92□□□□□ -1.78
SMARCE1-202ENST00000348513 MT1XP80297 61 aa3.91□□□□□ -1.78
SMARCE1-202ENST00000348513 KRTAP19-4Q3LI73 84 aa3.9□□□□□ -1.78
SMARCE1-202ENST00000348513 LCE3BQ5TA77 95 aa3.9□□□□□ -1.79
SMARCE1-202ENST00000348513 HSPG2P98160 4391 aa3.87□□□□□ -1.79
SMARCE1-202ENST00000348513 MT1GP13640 62 aa3.87□□□□□ -1.79
SMARCE1-202ENST00000348513 KRTAP4-8A0A0G2JLE6 195 aa3.87□□□□□ -1.79
SMARCE1-202ENST00000348513 KRTAP4-8Q9BYQ9 185 aa3.87□□□□□ -1.79
SMARCE1-202ENST00000348513 RYR2Q92736 4967 aa3.86□□□□□ -1.79
SMARCE1-202ENST00000348513 MT1BP07438 61 aa3.86□□□□□ -1.79
SMARCE1-202ENST00000348513 KRTAP9-8Q9BYQ0 159 aa3.86□□□□□ -1.79
SMARCE1-202ENST00000348513 LPAP08519 4548 aa3.82□□□□□ -1.8
SMARCE1-202ENST00000348513 HYDINQ4G0P3 5121 aa3.82□□□□□ -1.8
SMARCE1-202ENST00000348513 LCE2BO14633 110 aa3.8□□□□□ -1.8
SMARCE1-202ENST00000348513 LCE2CQ5TA81 110 aa3.78□□□□□ -1.8
SMARCE1-202ENST00000348513 HERC2O95714 4834 aa3.78□□□□□ -1.8
SMARCE1-202ENST00000348513 PKHD1P08F94 4074 aa3.78□□□□□ -1.81
SMARCE1-202ENST00000348513 PKD1P98161 4303 aa3.77□□□□□ -1.81
SMARCE1-202ENST00000348513 KRTAP9-3Q9BYQ3 159 aa3.77□□□□□ -1.81
SMARCE1-202ENST00000348513 LRP2P98164 4655 aa3.76□□□□□ -1.81
SMARCE1-202ENST00000348513 PKHD1L1Q86WI1 4243 aa3.76□□□□□ -1.81
SMARCE1-202ENST00000348513 BIRC6Q9NR09 4857 aa3.71□□□□□ -1.82
SMARCE1-202ENST00000348513 MT3P25713 68 aa3.7□□□□□ -1.82
SMARCE1-202ENST00000348513 HERC1Q15751 4861 aa3.7□□□□□ -1.82
SMARCE1-202ENST00000348513 PCLOQ9Y6V0 5065 aa3.68□□□□□ -1.82
SMARCE1-202ENST00000348513 PRM1P04553 51 aa3.66□□□□□ -1.82
SMARCE1-202ENST00000348513 LCE3EQ5T5B0 92 aa3.66□□□□□ -1.82
SMARCE1-202ENST00000348513 KRTAP4-7Q9BYR0 210 aa3.65□□□□□ -1.82
SMARCE1-202ENST00000348513 LCE3DQ9BYE3 92 aa3.65□□□□□ -1.83
SMARCE1-202ENST00000348513 LCE2DQ5TA82 110 aaPredicted RBP3.63□□□□□ -1.83
SMARCE1-202ENST00000348513 TNXBP22105 4242 aa3.63□□□□□ -1.83
SMARCE1-202ENST00000348513 KMT2CQ8NEZ4 4911 aaKnown RBP3.58□□□□□ -1.84
SMARCE1-202ENST00000348513 KRTAP19-3Q7Z4W3 81 aa3.57□□□□□ -1.84
SMARCE1-202ENST00000348513 KRTAP19-2Q3LHN2 52 aa3.56□□□□□ -1.84
SMARCE1-202ENST00000348513 MT1LQ93083 61 aa3.54□□□□□ -1.84
SMARCE1-202ENST00000348513 MT4P47944 62 aa3.52□□□□□ -1.85
SMARCE1-202ENST00000348513 MT1EP04732 61 aa3.51□□□□□ -1.85
SMARCE1-202ENST00000348513 FLGP20930 4061 aaPredicted RBP3.49□□□□□ -1.85
SMARCE1-202ENST00000348513 KRTAP9-2Q9BYQ4 174 aa3.47□□□□□ -1.85
SMARCE1-202ENST00000348513 LOC100996750A0A140TA64 210 aa3.46□□□□□ -1.86
SMARCE1-202ENST00000348513 KRTAP2-3P0C7H8 128 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms