RNA–Protein interactions for RNA: ENST00000340417.7

LIN54-201, Transcript of lin-54 DREAM MuvB core complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIN54, Length 6,127 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIN54-201ENST00000340417 STARD9Q9P2P6 4700 aa5.83□□□□□ -1.48
LIN54-201ENST00000340417 LRP1BQ9NZR2 4599 aa5.8□□□□□ -1.48
LIN54-201ENST00000340417 CSMD3Q7Z407 3707 aa5.79□□□□□ -1.48
LIN54-201ENST00000340417 KRTAP13-4Q3LI77 160 aa5.79□□□□□ -1.48
LIN54-201ENST00000340417 KRTAP12-1P59990 96 aa5.78□□□□□ -1.48
LIN54-201ENST00000340417 FAT2Q9NYQ8 4349 aa5.78□□□□□ -1.48
LIN54-201ENST00000340417 DNAH17Q9UFH2 4485 aa5.78□□□□□ -1.48
LIN54-201ENST00000340417 MT1HP80294 61 aa5.71□□□□□ -1.5
LIN54-201ENST00000340417 RYR1P21817 5038 aa5.71□□□□□ -1.5
LIN54-201ENST00000340417 KRTAP4-1Q9BYQ7 146 aa5.7□□□□□ -1.5
LIN54-201ENST00000340417 KRTAP10-6P60371 365 aaPredicted RBP5.7□□□□□ -1.5
LIN54-201ENST00000340417 DYNC2H1Q8NCM8 4307 aaKnown RBP5.7□□□□□ -1.5
LIN54-201ENST00000340417 NDUFAF8A1L188 74 aa5.68□□□□□ -1.5
LIN54-201ENST00000340417 KRTAP3-3Q9BYR6 98 aa5.67□□□□□ -1.5
LIN54-201ENST00000340417 DNAH3Q8TD57 4116 aa5.66□□□□□ -1.5
LIN54-201ENST00000340417 FAT1Q14517 4588 aa5.65□□□□□ -1.5
LIN54-201ENST00000340417 CMYA5Q8N3K9 4069 aa5.65□□□□□ -1.5
LIN54-201ENST00000340417 DNAH2Q9P225 4427 aa5.64□□□□□ -1.51
LIN54-201ENST00000340417 KRTAP10-12P60413 245 aa5.63□□□□□ -1.51
LIN54-201ENST00000340417 KRTAP17-1Q9BYP8 105 aa5.62□□□□□ -1.51
LIN54-201ENST00000340417 KRTAP15-1Q3LI76 137 aa5.61□□□□□ -1.51
LIN54-201ENST00000340417 KMT2AQ03164 3969 aa5.6□□□□□ -1.51
LIN54-201ENST00000340417 DNAH6Q9C0G6 4158 aa5.6□□□□□ -1.51
LIN54-201ENST00000340417 LORP23490 312 aaPredicted RBP5.59□□□□□ -1.51
LIN54-201ENST00000340417 SACSQ9NZJ4 4579 aa5.58□□□□□ -1.52
LIN54-201ENST00000340417 RYR3Q15413 4870 aa5.56□□□□□ -1.52
LIN54-201ENST00000340417 KRTAP3-2Q9BYR7 98 aa5.55□□□□□ -1.52
LIN54-201ENST00000340417 BIRC6Q9NR09 4857 aa5.55□□□□□ -1.52
LIN54-201ENST00000340417 KRTAP8-1Q8IUC2 63 aa5.53□□□□□ -1.52
LIN54-201ENST00000340417 MT2AP02795 61 aa5.5□□□□□ -1.53
LIN54-201ENST00000340417 CRCT1Q9UGL9 99 aa5.49□□□□□ -1.53
LIN54-201ENST00000340417 RYR2Q92736 4967 aa5.47□□□□□ -1.53
LIN54-201ENST00000340417 KIAA1109Q2LD37 5005 aa5.46□□□□□ -1.54
LIN54-201ENST00000340417 VPS13BQ7Z7G8 4022 aa5.46□□□□□ -1.54
LIN54-201ENST00000340417 DNAH8Q96JB1 4490 aa5.43□□□□□ -1.54
LIN54-201ENST00000340417 LYSTQ99698 3801 aa5.4□□□□□ -1.55
LIN54-201ENST00000340417 MT1FP04733 61 aa5.39□□□□□ -1.55
LIN54-201ENST00000340417 DNAH7Q8WXX0 4024 aa5.38□□□□□ -1.55
LIN54-201ENST00000340417 APOBP04114 4563 aaKnown RBP5.38□□□□□ -1.55
LIN54-201ENST00000340417 KRTAP12-3P60328 96 aa5.33□□□□□ -1.56
LIN54-201ENST00000340417 HERC2O95714 4834 aa5.33□□□□□ -1.56
LIN54-201ENST00000340417 HSPG2P98160 4391 aa5.31□□□□□ -1.56
LIN54-201ENST00000340417 FAT3Q8TDW7 4589 aa5.31□□□□□ -1.56
LIN54-201ENST00000340417 LCE3AQ5TA76 89 aa5.29□□□□□ -1.56
LIN54-201ENST00000340417 SPRR2GQ9BYE4 73 aa5.27□□□□□ -1.57
LIN54-201ENST00000340417 SPRR2FQ96RM1 72 aa5.25□□□□□ -1.57
LIN54-201ENST00000340417 HYDINQ4G0P3 5121 aa5.23□□□□□ -1.57
LIN54-201ENST00000340417 LRP1Q07954 4544 aaKnown RBP5.19□□□□□ -1.58
LIN54-201ENST00000340417 PKHD1L1Q86WI1 4243 aa5.19□□□□□ -1.58
LIN54-201ENST00000340417 HECTD4Q9Y4D8 3996 aa5.15□□□□□ -1.59
LIN54-201ENST00000340417 KRTAP23-1A1A580 65 aa5.1□□□□□ -1.59
LIN54-201ENST00000340417 HERC1Q15751 4861 aa5.08□□□□□ -1.6
LIN54-201ENST00000340417 KMT2CQ8NEZ4 4911 aaKnown RBP5.08□□□□□ -1.6
LIN54-201ENST00000340417 MYCBP2O75592 4640 aa5.08□□□□□ -1.6
LIN54-201ENST00000340417 PKHD1P08F94 4074 aa5.08□□□□□ -1.6
LIN54-201ENST00000340417 FRAS1Q86XX4 4008 aa5.06□□□□□ -1.6
LIN54-201ENST00000340417 PCLOQ9Y6V0 5065 aa5.06□□□□□ -1.6
LIN54-201ENST00000340417 SPRR2EP22531 72 aa5.05□□□□□ -1.6
LIN54-201ENST00000340417 SPRR2BP35325 72 aa5.05□□□□□ -1.6
LIN54-201ENST00000340417 SPRR2AP35326 72 aa5.05□□□□□ -1.6
LIN54-201ENST00000340417 LCE2CQ5TA81 110 aa5.01□□□□□ -1.61
LIN54-201ENST00000340417 KRTAP9-8Q9BYQ0 159 aa5.01□□□□□ -1.61
LIN54-201ENST00000340417 KRTAP10-7P60409 375 aaPredicted RBP5.01□□□□□ -1.61
LIN54-201ENST00000340417 PKD1P98161 4303 aa5□□□□□ -1.61
LIN54-201ENST00000340417 KRTAP9-2Q9BYQ4 174 aa5□□□□□ -1.61
LIN54-201ENST00000340417 KRTAP19-1Q8IUB9 90 aa4.99□□□□□ -1.61
LIN54-201ENST00000340417 KRTAP19-8Q3LI54 63 aa4.98□□□□□ -1.61
LIN54-201ENST00000340417 EPPK1P58107 5090 aaKnown RBP4.97□□□□□ -1.61
LIN54-201ENST00000340417 KRTAP10-5P60370 271 aa4.96□□□□□ -1.62
LIN54-201ENST00000340417 KRTAP19-5Q3LI72 72 aa4.92□□□□□ -1.62
LIN54-201ENST00000340417 KRTAP9-3Q9BYQ3 159 aa4.91□□□□□ -1.62
LIN54-201ENST00000340417 SPRR2DP22532 72 aa4.89□□□□□ -1.63
LIN54-201ENST00000340417 LRP2P98164 4655 aa4.89□□□□□ -1.63
LIN54-201ENST00000340417 LPAP08519 4548 aa4.88□□□□□ -1.63
LIN54-201ENST00000340417 MT1BP07438 61 aa4.84□□□□□ -1.63
LIN54-201ENST00000340417 KRTAP9-6A0A140TA67 174 aa4.84□□□□□ -1.64
LIN54-201ENST00000340417 ABCA13Q86UQ4 5058 aa4.82□□□□□ -1.64
LIN54-201ENST00000340417 TNXBP22105 4242 aa4.82□□□□□ -1.64
LIN54-201ENST00000340417 LCE2BO14633 110 aa4.8□□□□□ -1.64
LIN54-201ENST00000340417 MT1XP80297 61 aa4.78□□□□□ -1.64
LIN54-201ENST00000340417 LCE2DQ5TA82 110 aaPredicted RBP4.77□□□□□ -1.65
LIN54-201ENST00000340417 KRTAP19-2Q3LHN2 52 aa4.75□□□□□ -1.65
LIN54-201ENST00000340417 LCE2AQ5TA79 106 aaPredicted RBP4.71□□□□□ -1.66
LIN54-201ENST00000340417 MUC17Q685J3 4493 aa4.67□□□□□ -1.66
LIN54-201ENST00000340417 LCE3CQ5T5A8 94 aa4.66□□□□□ -1.66
LIN54-201ENST00000340417 KRTAP4-8A0A0G2JLE6 195 aa4.65□□□□□ -1.66
LIN54-201ENST00000340417 KRTAP19-4Q3LI73 84 aa4.65□□□□□ -1.66
LIN54-201ENST00000340417 KRTAP4-8Q9BYQ9 185 aa4.65□□□□□ -1.66
LIN54-201ENST00000340417 KRTAP19-6Q3LI70 58 aa4.61□□□□□ -1.67
LIN54-201ENST00000340417 MT1GP13640 62 aa4.56□□□□□ -1.68
LIN54-201ENST00000340417 FLGP20930 4061 aaPredicted RBP4.54□□□□□ -1.68
LIN54-201ENST00000340417 KRTAP12-4P60329 112 aa4.54□□□□□ -1.68
LIN54-201ENST00000340417 INE1O15225 51 aa4.53□□□□□ -1.68
LIN54-201ENST00000340417 FAT4Q6V0I7 4981 aa4.52□□□□□ -1.69
LIN54-201ENST00000340417 RNF213Q63HN8 5207 aa4.51□□□□□ -1.69
LIN54-201ENST00000340417 UBR4Q5T4S7 5183 aa4.5□□□□□ -1.69
LIN54-201ENST00000340417 KRTAP9-7A8MTY7 169 aa4.48□□□□□ -1.69
LIN54-201ENST00000340417 KRTAP19-3Q7Z4W3 81 aa4.45□□□□□ -1.7
LIN54-201ENST00000340417 HMCN2Q8NDA2 5059 aa4.42□□□□□ -1.7
LIN54-201ENST00000340417 LCE3BQ5TA77 95 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms