RNA–Protein interactions for RNA: ENST00000340417.7

LIN54-201, Transcript of lin-54 DREAM MuvB core complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIN54, Length 6,127 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIN54-201ENST00000340417 DCAF8L2P0C7V8 631 aa23.98■■□□□ 1.43
LIN54-201ENST00000340417 NISCHQ9Y2I1 1504 aa23.66■■□□□ 1.38
LIN54-201ENST00000340417 SHROOM4Q9ULL8 1493 aa21.91■■□□□ 1.1
LIN54-201ENST00000340417 SUPT5HO00267 1087 aaKnown RBP21.79■■□□□ 1.08
LIN54-201ENST00000340417 ABCC9O60706 1549 aa21.12■□□□□ 0.97
LIN54-201ENST00000340417 EHMT2Q96KQ7 1210 aa20.97■□□□□ 0.95
LIN54-201ENST00000340417 FAM9AQ8IZU1 332 aaPredicted RBP20.96■□□□□ 0.95
LIN54-201ENST00000340417 PABPN1Q86U42 306 aaKnown RBP eCLIP20.7■□□□□ 0.9
LIN54-201ENST00000340417 APLP2Q06481 763 aa20.56■□□□□ 0.88
LIN54-201ENST00000340417 RANGAP1P46060 587 aaPredicted RBP20.43■□□□□ 0.86
LIN54-201ENST00000340417 ATP1B4Q9UN42 357 aaPredicted RBP20.34■□□□□ 0.85
LIN54-201ENST00000340417 TRIM41Q8WV44 630 aa20.31■□□□□ 0.84
LIN54-201ENST00000340417 TTBK1Q5TCY1 1321 aaPredicted RBP20.11■□□□□ 0.81
LIN54-201ENST00000340417 UBTFP17480 764 aaKnown RBP20.11■□□□□ 0.81
LIN54-201ENST00000340417 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.92■□□□□ 0.78
LIN54-201ENST00000340417 HNRNPUL2Q1KMD3 747 aaKnown RBP19.92■□□□□ 0.78
LIN54-201ENST00000340417 CCDC180Q9P1Z9 1646 aa19.9■□□□□ 0.78
LIN54-201ENST00000340417 MYT1LQ9UL68 1186 aa19.89■□□□□ 0.77
LIN54-201ENST00000340417 FBLN2P98095 1184 aa19.78■□□□□ 0.76
LIN54-201ENST00000340417 SCRIBQ14160 1630 aa19.77■□□□□ 0.76
LIN54-201ENST00000340417 RB1CC1Q8TDY2 1594 aa19.73■□□□□ 0.75
LIN54-201ENST00000340417 ZCCHC6Q5VYS8 1495 aaKnown RBP19.49■□□□□ 0.71
LIN54-201ENST00000340417 NACADO15069 1562 aa19.42■□□□□ 0.7
LIN54-201ENST00000340417 CHIC1Q5VXU3 224 aa19.36■□□□□ 0.69
LIN54-201ENST00000340417 PCGF6Q9BYE7 350 aa19.29■□□□□ 0.68
LIN54-201ENST00000340417 ITGAEP38570 1179 aa19.26■□□□□ 0.67
LIN54-201ENST00000340417 PPARGC1BQ86YN6 1023 aaKnown RBP19.25■□□□□ 0.67
LIN54-201ENST00000340417 NPM1P06748 294 aaKnown RBP eCLIP19.16■□□□□ 0.66
LIN54-201ENST00000340417 ERCC6Q03468 1493 aa19.13■□□□□ 0.65
LIN54-201ENST00000340417 CCER1Q8TC90 406 aaPredicted RBP19.1■□□□□ 0.65
LIN54-201ENST00000340417 ARID3CA6NKF2 412 aa19.06■□□□□ 0.64
LIN54-201ENST00000340417 CHMP7Q8WUX9 453 aaPredicted RBP19.03■□□□□ 0.64
LIN54-201ENST00000340417 P3H3Q8IVL6 736 aa19.03■□□□□ 0.64
LIN54-201ENST00000340417 LOC105371045A0A1W2PR82 267 aa19.01■□□□□ 0.63
LIN54-201ENST00000340417 BAZ1BQ9UIG0 1483 aaKnown RBP18.98■□□□□ 0.63
LIN54-201ENST00000340417 FAM50AQ14320 339 aaKnown RBP18.96■□□□□ 0.62
LIN54-201ENST00000340417 ESF1Q9H501 851 aaKnown RBP18.9■□□□□ 0.62
LIN54-201ENST00000340417 CDK11AQ9UQ88 783 aaPredicted RBP18.86■□□□□ 0.61
LIN54-201ENST00000340417 CSRNP3Q8WYN3 585 aa18.83■□□□□ 0.6
LIN54-201ENST00000340417 PLPPR3Q6T4P5 718 aa18.83■□□□□ 0.6
LIN54-201ENST00000340417 TRIM52Q96A61 297 aa18.81■□□□□ 0.6
LIN54-201ENST00000340417 POLR3GLQ9BT43 218 aa18.81■□□□□ 0.6
LIN54-201ENST00000340417 ZNF777Q9ULD5 760 aaPredicted RBP18.81■□□□□ 0.6
LIN54-201ENST00000340417 BCANQ96GW7 911 aa18.79■□□□□ 0.6
LIN54-201ENST00000340417 SLC4A1APQ9BWU0 796 aaKnown RBP18.77■□□□□ 0.6
LIN54-201ENST00000340417 DCAF1Q9Y4B6 1507 aa18.73■□□□□ 0.59
LIN54-201ENST00000340417 ZEB1P37275 1124 aaPredicted RBP18.68■□□□□ 0.58
LIN54-201ENST00000340417 BAZ1AQ9NRL2 1556 aaPredicted RBP18.68■□□□□ 0.58
LIN54-201ENST00000340417 CECR2Q9BXF3 1484 aa18.68■□□□□ 0.58
LIN54-201ENST00000340417 TRHP20396 242 aaPredicted RBP18.65■□□□□ 0.58
LIN54-201ENST00000340417 RSF1Q96T23 1441 aaPredicted RBP18.62■□□□□ 0.57
LIN54-201ENST00000340417 TRIM26Q12899 539 aaPredicted RBP18.59■□□□□ 0.57
LIN54-201ENST00000340417 STAG3Q9UJ98 1225 aa18.57■□□□□ 0.56
LIN54-201ENST00000340417 PDS5BQ9NTI5 1447 aa18.56■□□□□ 0.56
LIN54-201ENST00000340417 KCNH8Q96L42 1107 aa18.54■□□□□ 0.56
LIN54-201ENST00000340417 SMARCA2P51531 1590 aa18.52■□□□□ 0.56
LIN54-201ENST00000340417 PELP1Q8IZL8 1130 aaKnown RBP18.5■□□□□ 0.55
LIN54-201ENST00000340417 CNGB1Q14028 1251 aaPredicted RBP18.49■□□□□ 0.55
LIN54-201ENST00000340417 ZNF326Q5BKZ1 582 aaKnown RBP18.46■□□□□ 0.55
LIN54-201ENST00000340417 CHGAP10645 457 aaKnown RBP18.44■□□□□ 0.54
LIN54-201ENST00000340417 ARID4BQ4LE39 1312 aaPredicted RBP18.43■□□□□ 0.54
LIN54-201ENST00000340417 WRNQ14191 1432 aaPredicted RBP eCLIP18.42■□□□□ 0.54
LIN54-201ENST00000340417 MYO15BQ96JP2 1530 aa18.42■□□□□ 0.54
LIN54-201ENST00000340417 PLEKHD1A6NEE1 506 aa18.39■□□□□ 0.53
LIN54-201ENST00000340417 NEUROD1Q13562 356 aa18.39■□□□□ 0.53
LIN54-201ENST00000340417 KIF27Q86VH2 1401 aa18.36■□□□□ 0.53
LIN54-201ENST00000340417 TSPY4P0CV99 314 aa18.33■□□□□ 0.52
LIN54-201ENST00000340417 TSPY10P0CW01 314 aa18.33■□□□□ 0.52
LIN54-201ENST00000340417 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.33■□□□□ 0.52
LIN54-201ENST00000340417 MTUS2Q5JR59 1369 aa18.29■□□□□ 0.52
LIN54-201ENST00000340417 MROH2BQ7Z745 1585 aa18.28■□□□□ 0.52
LIN54-201ENST00000340417 CADPSQ9ULU8 1353 aa18.25■□□□□ 0.51
LIN54-201ENST00000340417 EIF4G1Q04637 1599 aaKnown RBP18.22■□□□□ 0.51
LIN54-201ENST00000340417 CUX2O14529 1486 aa18.21■□□□□ 0.51
LIN54-201ENST00000340417 CHIC2Q9UKJ5 165 aa18.21■□□□□ 0.51
LIN54-201ENST00000340417 SOGA1O94964 1423 aa18.2■□□□□ 0.5
LIN54-201ENST00000340417 CEP164Q9UPV0 1460 aa18.2■□□□□ 0.5
LIN54-201ENST00000340417 ATAD2BQ9ULI0 1458 aa18.19■□□□□ 0.5
LIN54-201ENST00000340417 TDRD9Q8NDG6 1382 aaKnown RBP18.16■□□□□ 0.5
LIN54-201ENST00000340417 CCDC88BA6NC98 1476 aa18.16■□□□□ 0.5
LIN54-201ENST00000340417 EEA1Q15075 1411 aa18.13■□□□□ 0.49
LIN54-201ENST00000340417 OSCARQ8IYS5 282 aa18.11■□□□□ 0.49
LIN54-201ENST00000340417 PPP1R15AO75807 674 aaPredicted RBP18.1■□□□□ 0.49
LIN54-201ENST00000340417 CARMIL1Q5VZK9 1371 aa18.1■□□□□ 0.49
LIN54-201ENST00000340417 SLC24A1O60721 1099 aa18.1■□□□□ 0.49
LIN54-201ENST00000340417 CENPBP07199 599 aaPredicted RBP18.09■□□□□ 0.49
LIN54-201ENST00000340417 YTHDC1Q96MU7 727 aaKnown RBP18.09■□□□□ 0.49
LIN54-201ENST00000340417 CLIP1P30622 1438 aa18.09■□□□□ 0.49
LIN54-201ENST00000340417 NEFLP07196 543 aa18.08■□□□□ 0.49
LIN54-201ENST00000340417 C14orf37Q86TY3 774 aa18.07■□□□□ 0.48
LIN54-201ENST00000340417 CARMIL2Q6F5E8 1435 aa18.07■□□□□ 0.48
LIN54-201ENST00000340417 CFDP1Q9UEE9 299 aaPredicted RBP18.07■□□□□ 0.48
LIN54-201ENST00000340417 SMARCA4P51532 1647 aa18.06■□□□□ 0.48
LIN54-201ENST00000340417 GOLGA3Q08378 1498 aa18.06■□□□□ 0.48
LIN54-201ENST00000340417 SCAF1Q9H7N4 1312 aaKnown RBP18.04■□□□□ 0.48
LIN54-201ENST00000340417 CYB5RLQ6IPT4 315 aa18.04■□□□□ 0.48
LIN54-201ENST00000340417 TOP2AP11388 1531 aaKnown RBP18.04■□□□□ 0.48
LIN54-201ENST00000340417 FANCD2Q9BXW9 1451 aa18.03■□□□□ 0.48
LIN54-201ENST00000340417 WIZO95785 1651 aa18.03■□□□□ 0.48
LIN54-201ENST00000340417 SENP3Q9H4L4 574 aaPredicted RBP18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms