RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 KRTAP17-1Q9BYP8 105 aa1.59□□□□□ -2.15
CSMD3-202ENST00000339701 ALMS1Q8TCU4 4167 aa1.59□□□□□ -2.16
CSMD3-202ENST00000339701 FRAS1Q86XX4 4008 aa1.59□□□□□ -2.16
CSMD3-202ENST00000339701 LORP23490 312 aaPredicted RBP1.58□□□□□ -2.16
CSMD3-202ENST00000339701 DNAH1Q9P2D7 4330 aa1.58□□□□□ -2.16
CSMD3-202ENST00000339701 HECTD4Q9Y4D8 3996 aa1.57□□□□□ -2.16
CSMD3-202ENST00000339701 DNAH7Q8WXX0 4024 aa1.56□□□□□ -2.16
CSMD3-202ENST00000339701 KRTAP12-1P59990 96 aa1.56□□□□□ -2.16
CSMD3-202ENST00000339701 VPS13BQ7Z7G8 4022 aa1.56□□□□□ -2.16
CSMD3-202ENST00000339701 DNAH10Q8IVF4 4471 aa1.55□□□□□ -2.16
CSMD3-202ENST00000339701 MT1HL1P0DM35 61 aa1.53□□□□□ -2.16
CSMD3-202ENST00000339701 KRTAP8-1Q8IUC2 63 aa1.53□□□□□ -2.16
CSMD3-202ENST00000339701 KRTAP10-4P60372 401 aaPredicted RBP1.53□□□□□ -2.16
CSMD3-202ENST00000339701 PLECQ15149 4684 aaKnown RBP1.51□□□□□ -2.17
CSMD3-202ENST00000339701 DNAH11Q96DT5 4516 aa1.51□□□□□ -2.17
CSMD3-202ENST00000339701 DNAH9Q9NYC9 4486 aa1.51□□□□□ -2.17
CSMD3-202ENST00000339701 KMT2AQ03164 3969 aa1.51□□□□□ -2.17
CSMD3-202ENST00000339701 KRTAP15-1Q3LI76 137 aa1.51□□□□□ -2.17
CSMD3-202ENST00000339701 HUWE1Q7Z6Z7 4374 aaKnown RBP1.5□□□□□ -2.17
CSMD3-202ENST00000339701 DYNC1H1Q14204 4646 aaKnown RBP1.49□□□□□ -2.17
CSMD3-202ENST00000339701 KRTAP4-5Q9BYR2 181 aa1.49□□□□□ -2.17
CSMD3-202ENST00000339701 DNAH2Q9P225 4427 aa1.49□□□□□ -2.17
CSMD3-202ENST00000339701 LCE2AQ5TA79 106 aaPredicted RBP1.49□□□□□ -2.17
CSMD3-202ENST00000339701 KRTAP10-12P60413 245 aa1.48□□□□□ -2.17
CSMD3-202ENST00000339701 PRKDCP78527 4128 aaKnown RBP1.48□□□□□ -2.17
CSMD3-202ENST00000339701 KRTAP10-6P60371 365 aaPredicted RBP1.47□□□□□ -2.17
CSMD3-202ENST00000339701 DNAH17Q9UFH2 4485 aa1.47□□□□□ -2.17
CSMD3-202ENST00000339701 KRTAP10-7P60409 375 aaPredicted RBP1.46□□□□□ -2.17
CSMD3-202ENST00000339701 CRCT1Q9UGL9 99 aa1.46□□□□□ -2.18
CSMD3-202ENST00000339701 VPS13DQ5THJ4 4388 aa1.46□□□□□ -2.18
CSMD3-202ENST00000339701 HERC1Q15751 4861 aa1.44□□□□□ -2.18
CSMD3-202ENST00000339701 KRTAP12-3P60328 96 aa1.44□□□□□ -2.18
CSMD3-202ENST00000339701 SPRR2FQ96RM1 72 aa1.44□□□□□ -2.18
CSMD3-202ENST00000339701 PKHD1P08F94 4074 aa1.43□□□□□ -2.18
CSMD3-202ENST00000339701 LCE2BO14633 110 aa1.43□□□□□ -2.18
CSMD3-202ENST00000339701 SPRR2EP22531 72 aa1.43□□□□□ -2.18
CSMD3-202ENST00000339701 SPRR2BP35325 72 aa1.43□□□□□ -2.18
CSMD3-202ENST00000339701 SPRR2AP35326 72 aa1.43□□□□□ -2.18
CSMD3-202ENST00000339701 FAT2Q9NYQ8 4349 aa1.43□□□□□ -2.18
CSMD3-202ENST00000339701 LCE2CQ5TA81 110 aa1.42□□□□□ -2.18
CSMD3-202ENST00000339701 SACSQ9NZJ4 4579 aa1.41□□□□□ -2.18
CSMD3-202ENST00000339701 KRTAP9-6A0A140TA67 174 aa1.41□□□□□ -2.18
CSMD3-202ENST00000339701 DNAH5Q8TE73 4624 aa1.41□□□□□ -2.18
CSMD3-202ENST00000339701 SPRR2DP22532 72 aa1.41□□□□□ -2.18
CSMD3-202ENST00000339701 BIRC6Q9NR09 4857 aa1.41□□□□□ -2.18
CSMD3-202ENST00000339701 FAT1Q14517 4588 aa1.41□□□□□ -2.18
CSMD3-202ENST00000339701 SPRR2GQ9BYE4 73 aa1.4□□□□□ -2.19
CSMD3-202ENST00000339701 KRTAP3-1Q9BYR8 98 aa1.4□□□□□ -2.19
CSMD3-202ENST00000339701 LRP1BQ9NZR2 4599 aa1.4□□□□□ -2.19
CSMD3-202ENST00000339701 KRTAP9-2Q9BYQ4 174 aa1.4□□□□□ -2.19
CSMD3-202ENST00000339701 HSPG2P98160 4391 aa1.39□□□□□ -2.19
CSMD3-202ENST00000339701 RYR3Q15413 4870 aa1.38□□□□□ -2.19
CSMD3-202ENST00000339701 HYDINQ4G0P3 5121 aa1.38□□□□□ -2.19
CSMD3-202ENST00000339701 DYNC2H1Q8NCM8 4307 aaKnown RBP1.38□□□□□ -2.19
CSMD3-202ENST00000339701 RYR2Q92736 4967 aa1.37□□□□□ -2.19
CSMD3-202ENST00000339701 RYR1P21817 5038 aa1.37□□□□□ -2.19
CSMD3-202ENST00000339701 SPRR5A0A1B0GTR4 108 aa1.37□□□□□ -2.19
CSMD3-202ENST00000339701 KIAA1109Q2LD37 5005 aa1.37□□□□□ -2.19
CSMD3-202ENST00000339701 KRTAP12-4P60329 112 aa1.37□□□□□ -2.19
CSMD3-202ENST00000339701 MT1HP80294 61 aa1.35□□□□□ -2.19
CSMD3-202ENST00000339701 PKHD1L1Q86WI1 4243 aa1.35□□□□□ -2.19
CSMD3-202ENST00000339701 DNAH8Q96JB1 4490 aa1.34□□□□□ -2.19
CSMD3-202ENST00000339701 FLGP20930 4061 aaPredicted RBP1.34□□□□□ -2.19
CSMD3-202ENST00000339701 KRTAP20-1Q3LI63 56 aa1.34□□□□□ -2.2
CSMD3-202ENST00000339701 FAT3Q8TDW7 4589 aa1.34□□□□□ -2.2
CSMD3-202ENST00000339701 APOBP04114 4563 aaKnown RBP1.34□□□□□ -2.2
CSMD3-202ENST00000339701 EPPK1P58107 5090 aaKnown RBP1.34□□□□□ -2.2
CSMD3-202ENST00000339701 KRTAP4-1Q9BYQ7 146 aa1.33□□□□□ -2.2
CSMD3-202ENST00000339701 KMT2CQ8NEZ4 4911 aaKnown RBP1.33□□□□□ -2.2
CSMD3-202ENST00000339701 HERC2O95714 4834 aa1.32□□□□□ -2.2
CSMD3-202ENST00000339701 KRTAP9-7A8MTY7 169 aa1.31□□□□□ -2.2
CSMD3-202ENST00000339701 STARD9Q9P2P6 4700 aa1.31□□□□□ -2.2
CSMD3-202ENST00000339701 PKD1P98161 4303 aa1.31□□□□□ -2.2
CSMD3-202ENST00000339701 TNXBP22105 4242 aa1.31□□□□□ -2.2
CSMD3-202ENST00000339701 UBR4Q5T4S7 5183 aa1.3□□□□□ -2.2
CSMD3-202ENST00000339701 MYCBP2O75592 4640 aa1.3□□□□□ -2.2
CSMD3-202ENST00000339701 KRTAP19-8Q3LI54 63 aa1.3□□□□□ -2.2
CSMD3-202ENST00000339701 LCE3BQ5TA77 95 aa1.27□□□□□ -2.21
CSMD3-202ENST00000339701 MT2AP02795 61 aa1.27□□□□□ -2.21
CSMD3-202ENST00000339701 PCLOQ9Y6V0 5065 aa1.26□□□□□ -2.21
CSMD3-202ENST00000339701 KRTAP10-5P60370 271 aa1.26□□□□□ -2.21
CSMD3-202ENST00000339701 KRTAP19-1Q8IUB9 90 aa1.26□□□□□ -2.21
CSMD3-202ENST00000339701 ABCA13Q86UQ4 5058 aa1.25□□□□□ -2.21
CSMD3-202ENST00000339701 KRTAP2-3P0C7H8 128 aa1.24□□□□□ -2.21
CSMD3-202ENST00000339701 LCE3CQ5T5A8 94 aa1.24□□□□□ -2.21
CSMD3-202ENST00000339701 KRTAP2-4Q9BYR9 128 aa1.24□□□□□ -2.21
CSMD3-202ENST00000339701 LCE3AQ5TA76 89 aa1.24□□□□□ -2.21
CSMD3-202ENST00000339701 MT1FP04733 61 aa1.23□□□□□ -2.21
CSMD3-202ENST00000339701 LCE1AQ5T7P2 110 aa1.22□□□□□ -2.21
CSMD3-202ENST00000339701 MT1GP13640 62 aa1.21□□□□□ -2.22
CSMD3-202ENST00000339701 KRTAP19-2Q3LHN2 52 aa1.2□□□□□ -2.22
CSMD3-202ENST00000339701 MT4P47944 62 aa1.2□□□□□ -2.22
CSMD3-202ENST00000339701 KRTAP9-8Q9BYQ0 159 aa1.2□□□□□ -2.22
CSMD3-202ENST00000339701 LRP1Q07954 4544 aaKnown RBP1.19□□□□□ -2.22
CSMD3-202ENST00000339701 MT1EP04732 61 aa1.18□□□□□ -2.22
CSMD3-202ENST00000339701 LRP2P98164 4655 aa1.18□□□□□ -2.22
CSMD3-202ENST00000339701 KRTAP6-3Q3LI67 103 aa1.17□□□□□ -2.22
CSMD3-202ENST00000339701 KRTAP9-3Q9BYQ3 159 aa1.17□□□□□ -2.22
CSMD3-202ENST00000339701 MT1LQ93083 61 aa1.17□□□□□ -2.22
CSMD3-202ENST00000339701 KRTAP2-2Q9BYT5 123 aa1.17□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms