RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 STARD9Q9P2P6 4700 aa7.61□□□□□ -1.19
NPHP3-201ENST00000337331 DNAH3Q8TD57 4116 aa7.55□□□□□ -1.2
NPHP3-201ENST00000337331 PRO2289Q9P1D8 64 aa7.53□□□□□ -1.2
NPHP3-201ENST00000337331 DNAH1Q9P2D7 4330 aa7.51□□□□□ -1.21
NPHP3-201ENST00000337331 VPS13DQ5THJ4 4388 aa7.49□□□□□ -1.21
NPHP3-201ENST00000337331 DNAH11Q96DT5 4516 aa7.41□□□□□ -1.22
NPHP3-201ENST00000337331 DNAH8Q96JB1 4490 aa7.41□□□□□ -1.22
NPHP3-201ENST00000337331 MT1HL1P0DM35 61 aa7.41□□□□□ -1.22
NPHP3-201ENST00000337331 DNAH5Q8TE73 4624 aa7.39□□□□□ -1.23
NPHP3-201ENST00000337331 KMT2AQ03164 3969 aa7.36□□□□□ -1.23
NPHP3-201ENST00000337331 KRTAP10-4P60372 401 aaPredicted RBP7.33□□□□□ -1.24
NPHP3-201ENST00000337331 DNAH17Q9UFH2 4485 aa7.29□□□□□ -1.24
NPHP3-201ENST00000337331 KRTAP4-5Q9BYR2 181 aa7.29□□□□□ -1.24
NPHP3-201ENST00000337331 LYSTQ99698 3801 aa7.29□□□□□ -1.24
NPHP3-201ENST00000337331 DYNC1H1Q14204 4646 aaKnown RBP7.26□□□□□ -1.25
NPHP3-201ENST00000337331 FRAS1Q86XX4 4008 aa7.25□□□□□ -1.25
NPHP3-201ENST00000337331 DYNC2H1Q8NCM8 4307 aaKnown RBP7.22□□□□□ -1.25
NPHP3-201ENST00000337331 LRP1BQ9NZR2 4599 aa7.21□□□□□ -1.25
NPHP3-201ENST00000337331 DNAH2Q9P225 4427 aa7.21□□□□□ -1.26
NPHP3-201ENST00000337331 DNAH7Q8WXX0 4024 aa7.19□□□□□ -1.26
NPHP3-201ENST00000337331 FAT1Q14517 4588 aa7.19□□□□□ -1.26
NPHP3-201ENST00000337331 INE1O15225 51 aa7.18□□□□□ -1.26
NPHP3-201ENST00000337331 HYDINQ4G0P3 5121 aa7.12□□□□□ -1.27
NPHP3-201ENST00000337331 LORP23490 312 aaPredicted RBP7.12□□□□□ -1.27
NPHP3-201ENST00000337331 SACSQ9NZJ4 4579 aa7.11□□□□□ -1.27
NPHP3-201ENST00000337331 KIAA1109Q2LD37 5005 aa7.07□□□□□ -1.28
NPHP3-201ENST00000337331 RYR2Q92736 4967 aa7.06□□□□□ -1.28
NPHP3-201ENST00000337331 FAT2Q9NYQ8 4349 aa7.02□□□□□ -1.29
NPHP3-201ENST00000337331 RYR3Q15413 4870 aa7.01□□□□□ -1.29
NPHP3-201ENST00000337331 DNAH6Q9C0G6 4158 aa7□□□□□ -1.29
NPHP3-201ENST00000337331 RYR1P21817 5038 aa7□□□□□ -1.29
NPHP3-201ENST00000337331 HECTD4Q9Y4D8 3996 aa6.97□□□□□ -1.29
NPHP3-201ENST00000337331 KMT2CQ8NEZ4 4911 aaKnown RBP6.97□□□□□ -1.29
NPHP3-201ENST00000337331 VPS13BQ7Z7G8 4022 aa6.92□□□□□ -1.3
NPHP3-201ENST00000337331 APOBP04114 4563 aaKnown RBP6.9□□□□□ -1.3
NPHP3-201ENST00000337331 KRTAP17-1Q9BYP8 105 aa6.9□□□□□ -1.31
NPHP3-201ENST00000337331 MYCBP2O75592 4640 aa6.89□□□□□ -1.31
NPHP3-201ENST00000337331 PKHD1P08F94 4074 aa6.88□□□□□ -1.31
NPHP3-201ENST00000337331 KRTAP10-12P60413 245 aa6.86□□□□□ -1.31
NPHP3-201ENST00000337331 LRP1Q07954 4544 aaKnown RBP6.78□□□□□ -1.32
NPHP3-201ENST00000337331 KRTAP23-1A1A580 65 aa6.75□□□□□ -1.33
NPHP3-201ENST00000337331 KRTAP12-3P60328 96 aa6.75□□□□□ -1.33
NPHP3-201ENST00000337331 PKD1P98161 4303 aa6.73□□□□□ -1.33
NPHP3-201ENST00000337331 LCE3AQ5TA76 89 aa6.72□□□□□ -1.33
NPHP3-201ENST00000337331 HSPG2P98160 4391 aa6.66□□□□□ -1.34
NPHP3-201ENST00000337331 KRTAP4-1Q9BYQ7 146 aa6.65□□□□□ -1.34
NPHP3-201ENST00000337331 HERC2O95714 4834 aa6.65□□□□□ -1.34
NPHP3-201ENST00000337331 BIRC6Q9NR09 4857 aa6.65□□□□□ -1.35
NPHP3-201ENST00000337331 EPPK1P58107 5090 aaKnown RBP6.64□□□□□ -1.35
NPHP3-201ENST00000337331 FAT3Q8TDW7 4589 aa6.59□□□□□ -1.35
NPHP3-201ENST00000337331 CRCT1Q9UGL9 99 aa6.58□□□□□ -1.36
NPHP3-201ENST00000337331 SPRR5A0A1B0GTR4 108 aa6.53□□□□□ -1.36
NPHP3-201ENST00000337331 ABCA13Q86UQ4 5058 aa6.42□□□□□ -1.38
NPHP3-201ENST00000337331 LRP2P98164 4655 aa6.38□□□□□ -1.39
NPHP3-201ENST00000337331 MT1HP80294 61 aa6.34□□□□□ -1.39
NPHP3-201ENST00000337331 MT2AP02795 61 aa6.34□□□□□ -1.4
NPHP3-201ENST00000337331 SPRR2GQ9BYE4 73 aa6.33□□□□□ -1.4
NPHP3-201ENST00000337331 PKHD1L1Q86WI1 4243 aa6.25□□□□□ -1.41
NPHP3-201ENST00000337331 TNXBP22105 4242 aa6.24□□□□□ -1.41
NPHP3-201ENST00000337331 LPAP08519 4548 aa6.24□□□□□ -1.41
NPHP3-201ENST00000337331 MT1FP04733 61 aa6.23□□□□□ -1.41
NPHP3-201ENST00000337331 KRTAP8-1Q8IUC2 63 aa6.2□□□□□ -1.42
NPHP3-201ENST00000337331 HERC1Q15751 4861 aa6.19□□□□□ -1.42
NPHP3-201ENST00000337331 PCLOQ9Y6V0 5065 aa6.16□□□□□ -1.42
NPHP3-201ENST00000337331 KRTAP10-5P60370 271 aa6.16□□□□□ -1.42
NPHP3-201ENST00000337331 KRTAP19-1Q8IUB9 90 aa6.04□□□□□ -1.44
NPHP3-201ENST00000337331 KRTAP19-5Q3LI72 72 aa6.02□□□□□ -1.45
NPHP3-201ENST00000337331 LCE3CQ5T5A8 94 aa5.92□□□□□ -1.46
NPHP3-201ENST00000337331 KRTAP19-8Q3LI54 63 aa5.89□□□□□ -1.47
NPHP3-201ENST00000337331 KRTAP10-7P60409 375 aaPredicted RBP5.88□□□□□ -1.47
NPHP3-201ENST00000337331 LCE2CQ5TA81 110 aa5.88□□□□□ -1.47
NPHP3-201ENST00000337331 HMCN2Q8NDA2 5059 aa5.86□□□□□ -1.47
NPHP3-201ENST00000337331 RNF213Q63HN8 5207 aa5.84□□□□□ -1.47
NPHP3-201ENST00000337331 UBR4Q5T4S7 5183 aa5.83□□□□□ -1.48
NPHP3-201ENST00000337331 KRTAP19-2Q3LHN2 52 aa5.8□□□□□ -1.48
NPHP3-201ENST00000337331 MT1XP80297 61 aa5.79□□□□□ -1.48
NPHP3-201ENST00000337331 SPRR2FQ96RM1 72 aa5.79□□□□□ -1.48
NPHP3-201ENST00000337331 MUC2Q02817 5179 aa5.77□□□□□ -1.49
NPHP3-201ENST00000337331 MT1BP07438 61 aa5.76□□□□□ -1.49
NPHP3-201ENST00000337331 KRTAP9-8Q9BYQ0 159 aa5.73□□□□□ -1.49
NPHP3-201ENST00000337331 FAT4Q6V0I7 4981 aa5.71□□□□□ -1.5
NPHP3-201ENST00000337331 SYNE1Q8NF91 8797 aaKnown RBP5.68□□□□□ -1.5
NPHP3-201ENST00000337331 MUC17Q685J3 4493 aa5.67□□□□□ -1.5
NPHP3-201ENST00000337331 FLGP20930 4061 aaPredicted RBP5.66□□□□□ -1.5
NPHP3-201ENST00000337331 KRTAP19-4Q3LI73 84 aa5.66□□□□□ -1.5
NPHP3-201ENST00000337331 KRTAP12-4P60329 112 aa5.62□□□□□ -1.51
NPHP3-201ENST00000337331 KRTAP4-8A0A0G2JLE6 195 aa5.61□□□□□ -1.51
NPHP3-201ENST00000337331 KRTAP4-8Q9BYQ9 185 aa5.61□□□□□ -1.51
NPHP3-201ENST00000337331 KRTAP9-3Q9BYQ3 159 aa5.55□□□□□ -1.52
NPHP3-201ENST00000337331 KRTAP4-7Q9BYR0 210 aa5.46□□□□□ -1.53
NPHP3-201ENST00000337331 MT1GP13640 62 aa5.46□□□□□ -1.54
NPHP3-201ENST00000337331 FSIP2Q5CZC0 6907 aa5.43□□□□□ -1.54
NPHP3-201ENST00000337331 LCE3BQ5TA77 95 aa5.43□□□□□ -1.54
NPHP3-201ENST00000337331 LCE2AQ5TA79 106 aaPredicted RBP5.4□□□□□ -1.54
NPHP3-201ENST00000337331 LCE2BO14633 110 aa5.39□□□□□ -1.55
NPHP3-201ENST00000337331 OBSCNQ5VST9 7968 aa5.29□□□□□ -1.56
NPHP3-201ENST00000337331 SPRR2EP22531 72 aa5.28□□□□□ -1.56
NPHP3-201ENST00000337331 SPRR2BP35325 72 aa5.28□□□□□ -1.56
NPHP3-201ENST00000337331 SPRR2AP35326 72 aa5.28□□□□□ -1.56
NPHP3-201ENST00000337331 KRTAP9-6A8MVA2 160 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 125.7 ms