RNA–Protein interactions for RNA: ENST00000337299.6

COL2A1-201, Transcript of collagen type II alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL2A1, Length 4,257 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-201ENST00000337299 DNAH1Q9P2D7 4330 aa6.33□□□□□ -1.4
COL2A1-201ENST00000337299 FAT1Q14517 4588 aa6.3□□□□□ -1.4
COL2A1-201ENST00000337299 LYSTQ99698 3801 aa6.29□□□□□ -1.4
COL2A1-201ENST00000337299 KMT2AQ03164 3969 aa6.25□□□□□ -1.41
COL2A1-201ENST00000337299 KRTAP4-5Q9BYR2 181 aa6.24□□□□□ -1.41
COL2A1-201ENST00000337299 KRTAP10-4P60372 401 aaPredicted RBP6.21□□□□□ -1.42
COL2A1-201ENST00000337299 MT1HL1P0DM35 61 aa6.19□□□□□ -1.42
COL2A1-201ENST00000337299 LRP1BQ9NZR2 4599 aa6.17□□□□□ -1.42
COL2A1-201ENST00000337299 ALMS1Q8TCU4 4167 aa6.16□□□□□ -1.42
COL2A1-201ENST00000337299 VPS13DQ5THJ4 4388 aa6.15□□□□□ -1.43
COL2A1-201ENST00000337299 DNAH8Q96JB1 4490 aa6.14□□□□□ -1.43
COL2A1-201ENST00000337299 DYNC1H1Q14204 4646 aaKnown RBP6.1□□□□□ -1.43
COL2A1-201ENST00000337299 MYCBP2O75592 4640 aa6.1□□□□□ -1.43
COL2A1-201ENST00000337299 KIAA1109Q2LD37 5005 aa6.09□□□□□ -1.43
COL2A1-201ENST00000337299 RYR1P21817 5038 aa6.08□□□□□ -1.44
COL2A1-201ENST00000337299 DNAH2Q9P225 4427 aa6.05□□□□□ -1.44
COL2A1-201ENST00000337299 KRTAP10-10P60014 251 aa6.05□□□□□ -1.44
COL2A1-201ENST00000337299 DNAH17Q9UFH2 4485 aa6.01□□□□□ -1.45
COL2A1-201ENST00000337299 LORP23490 312 aaPredicted RBP6□□□□□ -1.45
COL2A1-201ENST00000337299 DNAH7Q8WXX0 4024 aa6□□□□□ -1.45
COL2A1-201ENST00000337299 CMYA5Q8N3K9 4069 aa5.97□□□□□ -1.45
COL2A1-201ENST00000337299 FRAS1Q86XX4 4008 aa5.97□□□□□ -1.45
COL2A1-201ENST00000337299 VPS13BQ7Z7G8 4022 aa5.96□□□□□ -1.46
COL2A1-201ENST00000337299 FAT3Q8TDW7 4589 aa5.95□□□□□ -1.46
COL2A1-201ENST00000337299 RYR3Q15413 4870 aa5.94□□□□□ -1.46
COL2A1-201ENST00000337299 DNAH6Q9C0G6 4158 aa5.94□□□□□ -1.46
COL2A1-201ENST00000337299 DNAH3Q8TD57 4116 aa5.92□□□□□ -1.46
COL2A1-201ENST00000337299 SACSQ9NZJ4 4579 aa5.91□□□□□ -1.46
COL2A1-201ENST00000337299 LRP1Q07954 4544 aaKnown RBP5.91□□□□□ -1.46
COL2A1-201ENST00000337299 PRO2289Q9P1D8 64 aa5.87□□□□□ -1.47
COL2A1-201ENST00000337299 DYNC2H1Q8NCM8 4307 aaKnown RBP5.86□□□□□ -1.47
COL2A1-201ENST00000337299 HYDINQ4G0P3 5121 aa5.86□□□□□ -1.47
COL2A1-201ENST00000337299 APOBP04114 4563 aaKnown RBP5.86□□□□□ -1.47
COL2A1-201ENST00000337299 PKHD1P08F94 4074 aa5.82□□□□□ -1.48
COL2A1-201ENST00000337299 FAT2Q9NYQ8 4349 aa5.79□□□□□ -1.48
COL2A1-201ENST00000337299 KMT2CQ8NEZ4 4911 aaKnown RBP5.78□□□□□ -1.48
COL2A1-201ENST00000337299 INE1O15225 51 aa5.77□□□□□ -1.49
COL2A1-201ENST00000337299 HECTD4Q9Y4D8 3996 aa5.76□□□□□ -1.49
COL2A1-201ENST00000337299 KRTAP17-1Q9BYP8 105 aa5.76□□□□□ -1.49
COL2A1-201ENST00000337299 LRP2P98164 4655 aa5.65□□□□□ -1.5
COL2A1-201ENST00000337299 LCE3AQ5TA76 89 aa5.65□□□□□ -1.5
COL2A1-201ENST00000337299 RYR2Q92736 4967 aa5.65□□□□□ -1.5
COL2A1-201ENST00000337299 KRTAP4-1Q9BYQ7 146 aa5.64□□□□□ -1.51
COL2A1-201ENST00000337299 HERC2O95714 4834 aa5.63□□□□□ -1.51
COL2A1-201ENST00000337299 KRTAP12-3P60328 96 aa5.51□□□□□ -1.53
COL2A1-201ENST00000337299 KRTAP23-1A1A580 65 aa5.51□□□□□ -1.53
COL2A1-201ENST00000337299 KRTAP10-12P60413 245 aa5.48□□□□□ -1.53
COL2A1-201ENST00000337299 HSPG2P98160 4391 aa5.45□□□□□ -1.54
COL2A1-201ENST00000337299 PKD1P98161 4303 aa5.43□□□□□ -1.54
COL2A1-201ENST00000337299 EPPK1P58107 5090 aaKnown RBP5.42□□□□□ -1.54
COL2A1-201ENST00000337299 PCLOQ9Y6V0 5065 aa5.39□□□□□ -1.55
COL2A1-201ENST00000337299 LPAP08519 4548 aa5.37□□□□□ -1.55
COL2A1-201ENST00000337299 ABCA13Q86UQ4 5058 aa5.28□□□□□ -1.56
COL2A1-201ENST00000337299 MT1HP80294 61 aa5.27□□□□□ -1.57
COL2A1-201ENST00000337299 BIRC6Q9NR09 4857 aa5.26□□□□□ -1.57
COL2A1-201ENST00000337299 CRCT1Q9UGL9 99 aa5.24□□□□□ -1.57
COL2A1-201ENST00000337299 SPRR5A0A1B0GTR4 108 aa5.2□□□□□ -1.58
COL2A1-201ENST00000337299 MT2AP02795 61 aa5.19□□□□□ -1.58
COL2A1-201ENST00000337299 MUC2Q02817 5179 aa5.19□□□□□ -1.58
COL2A1-201ENST00000337299 HERC1Q15751 4861 aa5.17□□□□□ -1.58
COL2A1-201ENST00000337299 RNF213Q63HN8 5207 aa5.16□□□□□ -1.58
COL2A1-201ENST00000337299 MT1FP04733 61 aa5.15□□□□□ -1.58
COL2A1-201ENST00000337299 FSIP2Q5CZC0 6907 aa5.14□□□□□ -1.59
COL2A1-201ENST00000337299 KRTAP8-1Q8IUC2 63 aa5.11□□□□□ -1.59
COL2A1-201ENST00000337299 SPRR2GQ9BYE4 73 aa5.1□□□□□ -1.59
COL2A1-201ENST00000337299 PKHD1L1Q86WI1 4243 aa5.09□□□□□ -1.59
COL2A1-201ENST00000337299 TNXBP22105 4242 aa5.08□□□□□ -1.6
COL2A1-201ENST00000337299 KRTAP10-5P60370 271 aa5.04□□□□□ -1.6
COL2A1-201ENST00000337299 FAT4Q6V0I7 4981 aa5.02□□□□□ -1.61
COL2A1-201ENST00000337299 UBR4Q5T4S7 5183 aa5.02□□□□□ -1.61
COL2A1-201ENST00000337299 KRTAP19-1Q8IUB9 90 aa5.01□□□□□ -1.61
COL2A1-201ENST00000337299 KRTAP19-5Q3LI72 72 aa4.97□□□□□ -1.61
COL2A1-201ENST00000337299 LCE2CQ5TA81 110 aa4.96□□□□□ -1.62
COL2A1-201ENST00000337299 LCE3CQ5T5A8 94 aa4.94□□□□□ -1.62
COL2A1-201ENST00000337299 KRTAP10-7P60409 375 aaPredicted RBP4.92□□□□□ -1.62
COL2A1-201ENST00000337299 KRTAP9-8Q9BYQ0 159 aa4.87□□□□□ -1.63
COL2A1-201ENST00000337299 MUC17Q685J3 4493 aa4.87□□□□□ -1.63
COL2A1-201ENST00000337299 KRTAP19-2Q3LHN2 52 aa4.86□□□□□ -1.63
COL2A1-201ENST00000337299 MT1XP80297 61 aa4.8□□□□□ -1.64
COL2A1-201ENST00000337299 FLGP20930 4061 aaPredicted RBP4.79□□□□□ -1.64
COL2A1-201ENST00000337299 HMCN2Q8NDA2 5059 aa4.76□□□□□ -1.65
COL2A1-201ENST00000337299 MT1BP07438 61 aa4.75□□□□□ -1.65
COL2A1-201ENST00000337299 KRTAP19-8Q3LI54 63 aa4.75□□□□□ -1.65
COL2A1-201ENST00000337299 SYNE1Q8NF91 8797 aaKnown RBP4.74□□□□□ -1.65
COL2A1-201ENST00000337299 KRTAP9-3Q9BYQ3 159 aa4.69□□□□□ -1.66
COL2A1-201ENST00000337299 KRTAP4-8A0A0G2JLE6 195 aa4.67□□□□□ -1.66
COL2A1-201ENST00000337299 KRTAP4-8Q9BYQ9 185 aa4.67□□□□□ -1.66
COL2A1-201ENST00000337299 KRTAP12-4P60329 112 aa4.66□□□□□ -1.66
COL2A1-201ENST00000337299 KRTAP4-7Q9BYR0 210 aa4.64□□□□□ -1.67
COL2A1-201ENST00000337299 OBSCNQ5VST9 7968 aa4.62□□□□□ -1.67
COL2A1-201ENST00000337299 LCE2BO14633 110 aa4.6□□□□□ -1.67
COL2A1-201ENST00000337299 SPRR2FQ96RM1 72 aa4.6□□□□□ -1.67
COL2A1-201ENST00000337299 USH2AO75445 5202 aa4.52□□□□□ -1.69
COL2A1-201ENST00000337299 MT1GP13640 62 aa4.48□□□□□ -1.69
COL2A1-201ENST00000337299 LCE3BQ5TA77 95 aa4.48□□□□□ -1.69
COL2A1-201ENST00000337299 DSTQ03001 7570 aaKnown RBP4.41□□□□□ -1.7
COL2A1-201ENST00000337299 LCE2AQ5TA79 106 aaPredicted RBP4.38□□□□□ -1.71
COL2A1-201ENST00000337299 KRTAP9-6A8MVA2 160 aa4.32□□□□□ -1.72
COL2A1-201ENST00000337299 FCGBPQ9Y6R7 5405 aaPredicted RBP4.3□□□□□ -1.72
COL2A1-201ENST00000337299 KMT2DO14686 5537 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 130.6 ms