RNA–Protein interactions for RNA: ENST00000336916.8

FN1-202, Transcript of fibronectin 1, humanhuman

TSL 1 (best) BASIC

Gene FN1, Length 8,435 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FN1-202ENST00000336916 HUWE1Q7Z6Z7 4374 aaKnown RBP5.43□□□□□ -1.54
FN1-202ENST00000336916 KRTAP12-3P60328 96 aa5.37□□□□□ -1.55
FN1-202ENST00000336916 ANK2Q01484 3957 aa5.36□□□□□ -1.55
FN1-202ENST00000336916 KRTAP3-3Q9BYR6 98 aa5.36□□□□□ -1.55
FN1-202ENST00000336916 KRTAP10-4P60372 401 aaPredicted RBP5.35□□□□□ -1.55
FN1-202ENST00000336916 HECTD4Q9Y4D8 3996 aa5.34□□□□□ -1.56
FN1-202ENST00000336916 VPS13BQ7Z7G8 4022 aa5.33□□□□□ -1.56
FN1-202ENST00000336916 KRTAP3-2Q9BYR7 98 aa5.32□□□□□ -1.56
FN1-202ENST00000336916 KMT2AQ03164 3969 aa5.31□□□□□ -1.56
FN1-202ENST00000336916 DNAH6Q9C0G6 4158 aa5.27□□□□□ -1.57
FN1-202ENST00000336916 DNAH2Q9P225 4427 aa5.27□□□□□ -1.57
FN1-202ENST00000336916 KRTAP8-1Q8IUC2 63 aa5.2□□□□□ -1.58
FN1-202ENST00000336916 KRTAP19-4Q3LI73 84 aa5.16□□□□□ -1.58
FN1-202ENST00000336916 CRCT1Q9UGL9 99 aa5.15□□□□□ -1.58
FN1-202ENST00000336916 FRAS1Q86XX4 4008 aa5.14□□□□□ -1.59
FN1-202ENST00000336916 KRTAP4-5Q9BYR2 181 aa5.14□□□□□ -1.59
FN1-202ENST00000336916 LCE3AQ5TA76 89 aa5.11□□□□□ -1.59
FN1-202ENST00000336916 PRKDCP78527 4128 aaKnown RBP5.06□□□□□ -1.6
FN1-202ENST00000336916 FAT2Q9NYQ8 4349 aa5.02□□□□□ -1.61
FN1-202ENST00000336916 DNAH9Q9NYC9 4486 aa5.02□□□□□ -1.61
FN1-202ENST00000336916 SPRR2GQ9BYE4 73 aa4.99□□□□□ -1.61
FN1-202ENST00000336916 KRTAP10-7P60409 375 aaPredicted RBP4.93□□□□□ -1.62
FN1-202ENST00000336916 DYNC2H1Q8NCM8 4307 aaKnown RBP4.93□□□□□ -1.62
FN1-202ENST00000336916 KRTAP10-5P60370 271 aa4.91□□□□□ -1.62
FN1-202ENST00000336916 MT1HP80294 61 aa4.89□□□□□ -1.63
FN1-202ENST00000336916 FLGP20930 4061 aaPredicted RBP4.85□□□□□ -1.63
FN1-202ENST00000336916 LORP23490 312 aaPredicted RBP4.83□□□□□ -1.64
FN1-202ENST00000336916 VPS13DQ5THJ4 4388 aa4.82□□□□□ -1.64
FN1-202ENST00000336916 DNAH10Q8IVF4 4471 aa4.82□□□□□ -1.64
FN1-202ENST00000336916 MT2AP02795 61 aa4.75□□□□□ -1.65
FN1-202ENST00000336916 SPRR2FQ96RM1 72 aa4.75□□□□□ -1.65
FN1-202ENST00000336916 DNAH11Q96DT5 4516 aa4.71□□□□□ -1.66
FN1-202ENST00000336916 LCE3CQ5T5A8 94 aa4.69□□□□□ -1.66
FN1-202ENST00000336916 KRTAP4-1Q9BYQ7 146 aa4.66□□□□□ -1.66
FN1-202ENST00000336916 STARD9Q9P2P6 4700 aa4.63□□□□□ -1.67
FN1-202ENST00000336916 DNAH17Q9UFH2 4485 aa4.62□□□□□ -1.67
FN1-202ENST00000336916 KRTAP19-5Q3LI72 72 aa4.62□□□□□ -1.67
FN1-202ENST00000336916 PKHD1P08F94 4074 aa4.6□□□□□ -1.67
FN1-202ENST00000336916 MT1FP04733 61 aa4.59□□□□□ -1.67
FN1-202ENST00000336916 PKHD1L1Q86WI1 4243 aa4.57□□□□□ -1.68
FN1-202ENST00000336916 PLECQ15149 4684 aaKnown RBP4.56□□□□□ -1.68
FN1-202ENST00000336916 KRTAP19-8Q3LI54 63 aa4.54□□□□□ -1.68
FN1-202ENST00000336916 DNAH8Q96JB1 4490 aa4.52□□□□□ -1.69
FN1-202ENST00000336916 DNAH5Q8TE73 4624 aa4.51□□□□□ -1.69
FN1-202ENST00000336916 SPRR2EP22531 72 aa4.51□□□□□ -1.69
FN1-202ENST00000336916 SPRR2BP35325 72 aa4.51□□□□□ -1.69
FN1-202ENST00000336916 SPRR2AP35326 72 aa4.51□□□□□ -1.69
FN1-202ENST00000336916 KRTAP12-4P60329 112 aa4.51□□□□□ -1.69
FN1-202ENST00000336916 LCE2BO14633 110 aa4.46□□□□□ -1.7
FN1-202ENST00000336916 LRP1BQ9NZR2 4599 aa4.44□□□□□ -1.7
FN1-202ENST00000336916 SPRR2DP22532 72 aa4.41□□□□□ -1.7
FN1-202ENST00000336916 LRP1Q07954 4544 aaKnown RBP4.36□□□□□ -1.71
FN1-202ENST00000336916 KRTAP19-1Q8IUB9 90 aa4.35□□□□□ -1.71
FN1-202ENST00000336916 MT1GP13640 62 aa4.34□□□□□ -1.72
FN1-202ENST00000336916 APOBP04114 4563 aaKnown RBP4.31□□□□□ -1.72
FN1-202ENST00000336916 DYNC1H1Q14204 4646 aaKnown RBP4.29□□□□□ -1.72
FN1-202ENST00000336916 MT1XP80297 61 aa4.29□□□□□ -1.72
FN1-202ENST00000336916 TNXBP22105 4242 aa4.25□□□□□ -1.73
FN1-202ENST00000336916 PKD1P98161 4303 aa4.25□□□□□ -1.73
FN1-202ENST00000336916 LCE3BQ5TA77 95 aa4.23□□□□□ -1.73
FN1-202ENST00000336916 KRTAP9-8Q9BYQ0 159 aa4.23□□□□□ -1.73
FN1-202ENST00000336916 HSPG2P98160 4391 aa4.19□□□□□ -1.74
FN1-202ENST00000336916 SACSQ9NZJ4 4579 aa4.17□□□□□ -1.74
FN1-202ENST00000336916 FAT1Q14517 4588 aa4.14□□□□□ -1.75
FN1-202ENST00000336916 MT1BP07438 61 aa4.14□□□□□ -1.75
FN1-202ENST00000336916 MT1LQ93083 61 aa4.13□□□□□ -1.75
FN1-202ENST00000336916 KRTAP9-3Q9BYQ3 159 aa4.13□□□□□ -1.75
FN1-202ENST00000336916 FAT3Q8TDW7 4589 aa4.13□□□□□ -1.75
FN1-202ENST00000336916 LCE2CQ5TA81 110 aa4.13□□□□□ -1.75
FN1-202ENST00000336916 LCE3DQ9BYE3 92 aa4.13□□□□□ -1.75
FN1-202ENST00000336916 KRTAP19-3Q7Z4W3 81 aa4.1□□□□□ -1.75
FN1-202ENST00000336916 SPRR5A0A1B0GTR4 108 aa4.07□□□□□ -1.76
FN1-202ENST00000336916 LCE3EQ5T5B0 92 aa4.05□□□□□ -1.76
FN1-202ENST00000336916 LCE2DQ5TA82 110 aaPredicted RBP4.02□□□□□ -1.77
FN1-202ENST00000336916 MT3P25713 68 aa3.94□□□□□ -1.78
FN1-202ENST00000336916 MYCBP2O75592 4640 aa3.94□□□□□ -1.78
FN1-202ENST00000336916 KRTAP19-6Q3LI70 58 aa3.93□□□□□ -1.78
FN1-202ENST00000336916 MT1EP04732 61 aa3.93□□□□□ -1.78
FN1-202ENST00000336916 KRTAP4-8A0A0G2JLE6 195 aa3.9□□□□□ -1.78
FN1-202ENST00000336916 KRTAP4-8Q9BYQ9 185 aa3.9□□□□□ -1.78
FN1-202ENST00000336916 DNHD1Q96M86 4753 aa3.89□□□□□ -1.79
FN1-202ENST00000336916 KRTAP9-2Q9BYQ4 174 aa3.85□□□□□ -1.79
FN1-202ENST00000336916 MT1MQ8N339 61 aa3.84□□□□□ -1.79
FN1-202ENST00000336916 KRTAP17-1Q9BYP8 105 aa3.81□□□□□ -1.8
FN1-202ENST00000336916 MT4P47944 62 aa3.75□□□□□ -1.81
FN1-202ENST00000336916 KRTAP19-2Q3LHN2 52 aa3.74□□□□□ -1.81
FN1-202ENST00000336916 LPAP08519 4548 aa3.73□□□□□ -1.81
FN1-202ENST00000336916 RYR1P21817 5038 aa3.73□□□□□ -1.81
FN1-202ENST00000336916 LRP2P98164 4655 aa3.72□□□□□ -1.81
FN1-202ENST00000336916 LCE1AQ5T7P2 110 aa3.69□□□□□ -1.82
FN1-202ENST00000336916 RYR3Q15413 4870 aa3.69□□□□□ -1.82
FN1-202ENST00000336916 KRTAP9-6A0A140TA67 174 aa3.68□□□□□ -1.82
FN1-202ENST00000336916 KRTAP20-1Q3LI63 56 aa3.65□□□□□ -1.83
FN1-202ENST00000336916 LCE1DQ5T752 114 aa3.61□□□□□ -1.83
FN1-202ENST00000336916 MUC17Q685J3 4493 aa3.6□□□□□ -1.83
FN1-202ENST00000336916 MT1AP04731 61 aa3.59□□□□□ -1.83
FN1-202ENST00000336916 LCE2AQ5TA79 106 aaPredicted RBP3.58□□□□□ -1.84
FN1-202ENST00000336916 PRM1P04553 51 aa3.57□□□□□ -1.84
FN1-202ENST00000336916 LCE4AQ5TA78 99 aa3.57□□□□□ -1.84
FN1-202ENST00000336916 LCE1BQ5T7P3 118 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms