RNA–Protein interactions for RNA: ENST00000336916.8

FN1-202, Transcript of fibronectin 1, humanhuman

TSL 1 (best) BASIC

Gene FN1, Length 8,435 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FN1-202ENST00000336916 DCAF8L2P0C7V8 631 aa20.79■□□□□ 0.92
FN1-202ENST00000336916 NISCHQ9Y2I1 1504 aa20.39■□□□□ 0.85
FN1-202ENST00000336916 FAM9AQ8IZU1 332 aaPredicted RBP19.7■□□□□ 0.74
FN1-202ENST00000336916 PELP1Q8IZL8 1130 aaKnown RBP19.53■□□□□ 0.72
FN1-202ENST00000336916 SUPT5HO00267 1087 aaKnown RBP19.43■□□□□ 0.7
FN1-202ENST00000336916 APLP2Q06481 763 aa19.35■□□□□ 0.69
FN1-202ENST00000336916 SHROOM4Q9ULL8 1493 aa19.07■□□□□ 0.64
FN1-202ENST00000336916 CCER1Q8TC90 406 aaPredicted RBP18.63■□□□□ 0.57
FN1-202ENST00000336916 ZEB1P37275 1124 aaPredicted RBP18.56■□□□□ 0.56
FN1-202ENST00000336916 EHMT2Q96KQ7 1210 aa18.51■□□□□ 0.55
FN1-202ENST00000336916 TRIM41Q8WV44 630 aa18.38■□□□□ 0.53
FN1-202ENST00000336916 CENPBP07199 599 aaPredicted RBP18.36■□□□□ 0.53
FN1-202ENST00000336916 ATP1B4Q9UN42 357 aaPredicted RBP18.29■□□□□ 0.52
FN1-202ENST00000336916 ERICH6Q7L0X2 663 aa18.26■□□□□ 0.51
FN1-202ENST00000336916 UBTFP17480 764 aaKnown RBP18.25■□□□□ 0.51
FN1-202ENST00000336916 NEFLP07196 543 aa18.15■□□□□ 0.5
FN1-202ENST00000336916 PCGF6Q9BYE7 350 aa18.1■□□□□ 0.49
FN1-202ENST00000336916 RANGAP1P46060 587 aaPredicted RBP18.01■□□□□ 0.47
FN1-202ENST00000336916 TTBK1Q5TCY1 1321 aaPredicted RBP17.97■□□□□ 0.47
FN1-202ENST00000336916 MYT1LQ9UL68 1186 aa17.89■□□□□ 0.45
FN1-202ENST00000336916 MYT1Q01538 1121 aa17.87■□□□□ 0.45
FN1-202ENST00000336916 DAXXQ9UER7 740 aaPredicted RBP17.78■□□□□ 0.44
FN1-202ENST00000336916 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.77■□□□□ 0.44
FN1-202ENST00000336916 HNRNPUL2Q1KMD3 747 aaKnown RBP17.77■□□□□ 0.44
FN1-202ENST00000336916 YTHDC1Q96MU7 727 aaKnown RBP17.75■□□□□ 0.43
FN1-202ENST00000336916 CCDC180Q9P1Z9 1646 aa17.71■□□□□ 0.43
FN1-202ENST00000336916 TRIM26Q12899 539 aaPredicted RBP17.66■□□□□ 0.42
FN1-202ENST00000336916 ABCC9O60706 1549 aa17.44■□□□□ 0.38
FN1-202ENST00000336916 SLC4A1APQ9BWU0 796 aaKnown RBP17.38■□□□□ 0.37
FN1-202ENST00000336916 POLR3GLQ9BT43 218 aa17.37■□□□□ 0.37
FN1-202ENST00000336916 ITGAEP38570 1179 aa17.36■□□□□ 0.37
FN1-202ENST00000336916 ZNF316A6NFI3 1004 aaPredicted RBP17.25■□□□□ 0.35
FN1-202ENST00000336916 ZBTB47Q9UFB7 747 aaPredicted RBP17.24■□□□□ 0.35
FN1-202ENST00000336916 CLSPNQ9HAW4 1339 aa17.21■□□□□ 0.35
FN1-202ENST00000336916 NEFMP07197 916 aa17.21■□□□□ 0.35
FN1-202ENST00000336916 CHIC1Q5VXU3 224 aa17.2■□□□□ 0.34
FN1-202ENST00000336916 FAM50AQ14320 339 aaKnown RBP17.19■□□□□ 0.34
FN1-202ENST00000336916 CDK11AQ9UQ88 783 aaPredicted RBP17.16■□□□□ 0.34
FN1-202ENST00000336916 TRIM52Q96A61 297 aa17.12■□□□□ 0.33
FN1-202ENST00000336916 SCRIBQ14160 1630 aa17.12■□□□□ 0.33
FN1-202ENST00000336916 PPARGC1BQ86YN6 1023 aaKnown RBP17.1■□□□□ 0.33
FN1-202ENST00000336916 RB1CC1Q8TDY2 1594 aa17.1■□□□□ 0.33
FN1-202ENST00000336916 RTL5Q5HYW3 569 aaPredicted RBP17.1■□□□□ 0.33
FN1-202ENST00000336916 HRCP23327 699 aa17.08■□□□□ 0.32
FN1-202ENST00000336916 ESF1Q9H501 851 aaKnown RBP17.05■□□□□ 0.32
FN1-202ENST00000336916 PABPN1Q86U42 306 aaKnown RBP eCLIP17.02■□□□□ 0.32
FN1-202ENST00000336916 FBLN2P98095 1184 aa17.01■□□□□ 0.31
FN1-202ENST00000336916 ANP32CO43423 234 aa16.99■□□□□ 0.31
FN1-202ENST00000336916 ACIN1Q9UKV3 1341 aaKnown RBP16.97■□□□□ 0.31
FN1-202ENST00000336916 BCANQ96GW7 911 aa16.96■□□□□ 0.31
FN1-202ENST00000336916 DIEXFQ68CQ4 756 aaKnown RBP16.92■□□□□ 0.3
FN1-202ENST00000336916 NPM1P06748 294 aaKnown RBP eCLIP16.92■□□□□ 0.3
FN1-202ENST00000336916 NACADO15069 1562 aa16.89■□□□□ 0.29
FN1-202ENST00000336916 CANXP27824 592 aaKnown RBP16.88■□□□□ 0.29
FN1-202ENST00000336916 LOC105371045A0A1W2PR82 267 aa16.87■□□□□ 0.29
FN1-202ENST00000336916 CNGB1Q14028 1251 aaPredicted RBP16.83■□□□□ 0.28
FN1-202ENST00000336916 SLC24A1O60721 1099 aa16.82■□□□□ 0.28
FN1-202ENST00000336916 ZCCHC6Q5VYS8 1495 aaKnown RBP16.8■□□□□ 0.28
FN1-202ENST00000336916 NEUROD1Q13562 356 aa16.8■□□□□ 0.28
FN1-202ENST00000336916 STAG3Q9UJ98 1225 aa16.77■□□□□ 0.28
FN1-202ENST00000336916 ZNF326Q5BKZ1 582 aaKnown RBP16.76■□□□□ 0.27
FN1-202ENST00000336916 CSRNP3Q8WYN3 585 aa16.68■□□□□ 0.26
FN1-202ENST00000336916 TONSLQ96HA7 1378 aa16.65■□□□□ 0.26
FN1-202ENST00000336916 ANP32BQ92688 251 aaKnown RBP16.65■□□□□ 0.26
FN1-202ENST00000336916 UPF2Q9HAU5 1272 aaKnown RBP16.64■□□□□ 0.25
FN1-202ENST00000336916 ZNF777Q9ULD5 760 aaPredicted RBP16.6■□□□□ 0.25
FN1-202ENST00000336916 ANP32AP39687 249 aaKnown RBP16.6■□□□□ 0.25
FN1-202ENST00000336916 EEA1Q15075 1411 aa16.57■□□□□ 0.24
FN1-202ENST00000336916 RSF1Q96T23 1441 aaPredicted RBP16.57■□□□□ 0.24
FN1-202ENST00000336916 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.54■□□□□ 0.24
FN1-202ENST00000336916 TSPY4P0CV99 314 aa16.54■□□□□ 0.24
FN1-202ENST00000336916 TSPY10P0CW01 314 aa16.54■□□□□ 0.24
FN1-202ENST00000336916 HSP90AA1P07900 732 aaKnown RBP16.52■□□□□ 0.24
FN1-202ENST00000336916 EIF5BO60841 1220 aaKnown RBP16.51■□□□□ 0.23
FN1-202ENST00000336916 CHMP7Q8WUX9 453 aaPredicted RBP16.5■□□□□ 0.23
FN1-202ENST00000336916 MTUS2Q5JR59 1369 aa16.49■□□□□ 0.23
FN1-202ENST00000336916 DCAF1Q9Y4B6 1507 aa16.48■□□□□ 0.23
FN1-202ENST00000336916 BAZ1BQ9UIG0 1483 aaKnown RBP16.47■□□□□ 0.23
FN1-202ENST00000336916 P3H3Q8IVL6 736 aa16.47■□□□□ 0.23
FN1-202ENST00000336916 NPM2Q86SE8 214 aaKnown RBP16.47■□□□□ 0.23
FN1-202ENST00000336916 CHGAP10645 457 aaKnown RBP16.44■□□□□ 0.22
FN1-202ENST00000336916 BAZ1AQ9NRL2 1556 aaPredicted RBP16.42■□□□□ 0.22
FN1-202ENST00000336916 ERCC6Q03468 1493 aa16.42■□□□□ 0.22
FN1-202ENST00000336916 MYH16Q9H6N6 1097 aa16.42■□□□□ 0.22
FN1-202ENST00000336916 WDR43Q15061 677 aaKnown RBP eCLIP16.38■□□□□ 0.21
FN1-202ENST00000336916 CDCA8Q53HL2 280 aa16.38■□□□□ 0.21
FN1-202ENST00000336916 TMC1Q8TDI8 760 aa16.35■□□□□ 0.21
FN1-202ENST00000336916 GOLGA3Q08378 1498 aa16.35■□□□□ 0.21
FN1-202ENST00000336916 ARID3CA6NKF2 412 aa16.33■□□□□ 0.2
FN1-202ENST00000336916 CDK11BP21127 795 aaKnown RBP16.33■□□□□ 0.2
FN1-202ENST00000336916 KIF27Q86VH2 1401 aa16.32■□□□□ 0.2
FN1-202ENST00000336916 PPP1R15AO75807 674 aaPredicted RBP16.28■□□□□ 0.2
FN1-202ENST00000336916 CLIP1P30622 1438 aa16.28■□□□□ 0.2
FN1-202ENST00000336916 PLEKHD1A6NEE1 506 aa16.28■□□□□ 0.2
FN1-202ENST00000336916 SMARCA2P51531 1590 aa16.28■□□□□ 0.2
FN1-202ENST00000336916 BCL11AQ9H165 835 aa16.27■□□□□ 0.2
FN1-202ENST00000336916 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.26■□□□□ 0.19
FN1-202ENST00000336916 FHAD1B1AJZ9 1412 aa16.25■□□□□ 0.19
FN1-202ENST00000336916 CEP164Q9UPV0 1460 aa16.24■□□□□ 0.19
FN1-202ENST00000336916 ANP32EQ9BTT0 268 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms