RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 DNAH7Q8WXX0 4024 aa4.55□□□□□ -1.68
CCDC88A-202ENST00000336838 CMYA5Q8N3K9 4069 aa4.53□□□□□ -1.68
CCDC88A-202ENST00000336838 HUWE1Q7Z6Z7 4374 aaKnown RBP4.52□□□□□ -1.69
CCDC88A-202ENST00000336838 LYSTQ99698 3801 aa4.48□□□□□ -1.69
CCDC88A-202ENST00000336838 DNAH1Q9P2D7 4330 aa4.47□□□□□ -1.69
CCDC88A-202ENST00000336838 ANK2Q01484 3957 aa4.46□□□□□ -1.7
CCDC88A-202ENST00000336838 DNAH6Q9C0G6 4158 aa4.45□□□□□ -1.7
CCDC88A-202ENST00000336838 KRTAP12-3P60328 96 aa4.45□□□□□ -1.7
CCDC88A-202ENST00000336838 DNAH2Q9P225 4427 aa4.38□□□□□ -1.71
CCDC88A-202ENST00000336838 KRTAP19-4Q3LI73 84 aa4.36□□□□□ -1.71
CCDC88A-202ENST00000336838 VPS13BQ7Z7G8 4022 aa4.34□□□□□ -1.71
CCDC88A-202ENST00000336838 KMT2AQ03164 3969 aa4.29□□□□□ -1.72
CCDC88A-202ENST00000336838 LCE3AQ5TA76 89 aa4.29□□□□□ -1.72
CCDC88A-202ENST00000336838 DNAH10Q8IVF4 4471 aa4.26□□□□□ -1.73
CCDC88A-202ENST00000336838 DNAH9Q9NYC9 4486 aa4.24□□□□□ -1.73
CCDC88A-202ENST00000336838 SPRR2GQ9BYE4 73 aa4.23□□□□□ -1.73
CCDC88A-202ENST00000336838 DYNC2H1Q8NCM8 4307 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-202ENST00000336838 VPS13DQ5THJ4 4388 aa4.17□□□□□ -1.74
CCDC88A-202ENST00000336838 PRKDCP78527 4128 aaKnown RBP4.16□□□□□ -1.74
CCDC88A-202ENST00000336838 LORP23490 312 aaPredicted RBP4.15□□□□□ -1.74
CCDC88A-202ENST00000336838 FRAS1Q86XX4 4008 aa4.14□□□□□ -1.75
CCDC88A-202ENST00000336838 DNAH11Q96DT5 4516 aa4.11□□□□□ -1.75
CCDC88A-202ENST00000336838 FAT2Q9NYQ8 4349 aa4.11□□□□□ -1.75
CCDC88A-202ENST00000336838 KRTAP4-5Q9BYR2 181 aa4.1□□□□□ -1.75
CCDC88A-202ENST00000336838 DNAH17Q9UFH2 4485 aa4.06□□□□□ -1.76
CCDC88A-202ENST00000336838 KRTAP8-1Q8IUC2 63 aa4.05□□□□□ -1.76
CCDC88A-202ENST00000336838 PLECQ15149 4684 aaKnown RBP4.04□□□□□ -1.76
CCDC88A-202ENST00000336838 STARD9Q9P2P6 4700 aa4.04□□□□□ -1.76
CCDC88A-202ENST00000336838 DNAH5Q8TE73 4624 aa4.01□□□□□ -1.77
CCDC88A-202ENST00000336838 MT1HP80294 61 aa3.99□□□□□ -1.77
CCDC88A-202ENST00000336838 LCE3CQ5T5A8 94 aa3.97□□□□□ -1.77
CCDC88A-202ENST00000336838 FLGP20930 4061 aaPredicted RBP3.96□□□□□ -1.77
CCDC88A-202ENST00000336838 KRTAP4-1Q9BYQ7 146 aa3.96□□□□□ -1.78
CCDC88A-202ENST00000336838 MT2AP02795 61 aa3.95□□□□□ -1.78
CCDC88A-202ENST00000336838 PKHD1P08F94 4074 aa3.93□□□□□ -1.78
CCDC88A-202ENST00000336838 SPRR5A0A1B0GTR4 108 aa3.91□□□□□ -1.78
CCDC88A-202ENST00000336838 CRCT1Q9UGL9 99 aa3.91□□□□□ -1.78
CCDC88A-202ENST00000336838 DNAH8Q96JB1 4490 aa3.9□□□□□ -1.79
CCDC88A-202ENST00000336838 KRTAP10-5P60370 271 aa3.9□□□□□ -1.79
CCDC88A-202ENST00000336838 KRTAP19-8Q3LI54 63 aa3.89□□□□□ -1.79
CCDC88A-202ENST00000336838 DYNC1H1Q14204 4646 aaKnown RBP3.89□□□□□ -1.79
CCDC88A-202ENST00000336838 KRTAP19-5Q3LI72 72 aa3.84□□□□□ -1.79
CCDC88A-202ENST00000336838 MT1FP04733 61 aa3.83□□□□□ -1.8
CCDC88A-202ENST00000336838 LRP1BQ9NZR2 4599 aa3.81□□□□□ -1.8
CCDC88A-202ENST00000336838 KRTAP10-7P60409 375 aaPredicted RBP3.77□□□□□ -1.81
CCDC88A-202ENST00000336838 KRTAP19-1Q8IUB9 90 aa3.77□□□□□ -1.81
CCDC88A-202ENST00000336838 PKHD1L1Q86WI1 4243 aa3.72□□□□□ -1.81
CCDC88A-202ENST00000336838 LRP1Q07954 4544 aaKnown RBP3.71□□□□□ -1.82
CCDC88A-202ENST00000336838 MT1XP80297 61 aa3.69□□□□□ -1.82
CCDC88A-202ENST00000336838 SACSQ9NZJ4 4579 aa3.68□□□□□ -1.82
CCDC88A-202ENST00000336838 PKD1P98161 4303 aa3.66□□□□□ -1.82
CCDC88A-202ENST00000336838 APOBP04114 4563 aaKnown RBP3.61□□□□□ -1.83
CCDC88A-202ENST00000336838 TNXBP22105 4242 aa3.61□□□□□ -1.83
CCDC88A-202ENST00000336838 SPRR2FQ96RM1 72 aa3.61□□□□□ -1.83
CCDC88A-202ENST00000336838 RYR1P21817 5038 aa3.59□□□□□ -1.83
CCDC88A-202ENST00000336838 FAT1Q14517 4588 aa3.58□□□□□ -1.84
CCDC88A-202ENST00000336838 MT1BP07438 61 aa3.56□□□□□ -1.84
CCDC88A-202ENST00000336838 KRTAP9-8Q9BYQ0 159 aa3.56□□□□□ -1.84
CCDC88A-202ENST00000336838 HSPG2P98160 4391 aa3.55□□□□□ -1.84
CCDC88A-202ENST00000336838 MT1GP13640 62 aa3.54□□□□□ -1.84
CCDC88A-202ENST00000336838 DNHD1Q96M86 4753 aa3.51□□□□□ -1.85
CCDC88A-202ENST00000336838 KRTAP12-4P60329 112 aa3.5□□□□□ -1.85
CCDC88A-202ENST00000336838 KRTAP9-3Q9BYQ3 159 aa3.49□□□□□ -1.85
CCDC88A-202ENST00000336838 LCE2CQ5TA81 110 aa3.48□□□□□ -1.85
CCDC88A-202ENST00000336838 MT1LQ93083 61 aa3.47□□□□□ -1.85
CCDC88A-202ENST00000336838 MYCBP2O75592 4640 aa3.47□□□□□ -1.85
CCDC88A-202ENST00000336838 FAT3Q8TDW7 4589 aa3.46□□□□□ -1.86
CCDC88A-202ENST00000336838 RYR3Q15413 4870 aa3.45□□□□□ -1.86
CCDC88A-202ENST00000336838 KRTAP19-2Q3LHN2 52 aa3.4□□□□□ -1.87
CCDC88A-202ENST00000336838 LCE3BQ5TA77 95 aa3.39□□□□□ -1.87
CCDC88A-202ENST00000336838 LCE3DQ9BYE3 92 aa3.39□□□□□ -1.87
CCDC88A-202ENST00000336838 RYR2Q92736 4967 aa3.38□□□□□ -1.87
CCDC88A-202ENST00000336838 LCE3EQ5T5B0 92 aa3.37□□□□□ -1.87
CCDC88A-202ENST00000336838 MT1EP04732 61 aa3.37□□□□□ -1.87
CCDC88A-202ENST00000336838 KRTAP17-1Q9BYP8 105 aa3.37□□□□□ -1.87
CCDC88A-202ENST00000336838 KRTAP19-3Q7Z4W3 81 aa3.37□□□□□ -1.87
CCDC88A-202ENST00000336838 LCE2BO14633 110 aa3.36□□□□□ -1.87
CCDC88A-202ENST00000336838 SPRR2EP22531 72 aa3.34□□□□□ -1.87
CCDC88A-202ENST00000336838 SPRR2BP35325 72 aa3.34□□□□□ -1.87
CCDC88A-202ENST00000336838 SPRR2AP35326 72 aa3.34□□□□□ -1.87
CCDC88A-202ENST00000336838 LRP2P98164 4655 aa3.28□□□□□ -1.88
CCDC88A-202ENST00000336838 SPRR2DP22532 72 aa3.27□□□□□ -1.89
CCDC88A-202ENST00000336838 KRTAP4-8A0A0G2JLE6 195 aa3.24□□□□□ -1.89
CCDC88A-202ENST00000336838 KRTAP4-8Q9BYQ9 185 aa3.24□□□□□ -1.89
CCDC88A-202ENST00000336838 KRTAP2-3P0C7H8 128 aa3.22□□□□□ -1.89
CCDC88A-202ENST00000336838 KRTAP2-4Q9BYR9 128 aa3.22□□□□□ -1.89
CCDC88A-202ENST00000336838 KRTAP2-1Q9BYU5 128 aa3.22□□□□□ -1.89
CCDC88A-202ENST00000336838 MUC17Q685J3 4493 aa3.21□□□□□ -1.9
CCDC88A-202ENST00000336838 KRTAP19-6Q3LI70 58 aa3.21□□□□□ -1.9
CCDC88A-202ENST00000336838 PCLOQ9Y6V0 5065 aa3.2□□□□□ -1.9
CCDC88A-202ENST00000336838 MT1MQ8N339 61 aa3.2□□□□□ -1.9
CCDC88A-202ENST00000336838 MT3P25713 68 aa3.16□□□□□ -1.9
CCDC88A-202ENST00000336838 HYDINQ4G0P3 5121 aa3.13□□□□□ -1.91
CCDC88A-202ENST00000336838 KMT2CQ8NEZ4 4911 aaKnown RBP3.12□□□□□ -1.91
CCDC88A-202ENST00000336838 KIAA1109Q2LD37 5005 aa3.12□□□□□ -1.91
CCDC88A-202ENST00000336838 MT1AP04731 61 aa3.11□□□□□ -1.91
CCDC88A-202ENST00000336838 KRTAP19-7Q3SYF9 63 aa3.07□□□□□ -1.92
CCDC88A-202ENST00000336838 LPAP08519 4548 aa3.06□□□□□ -1.92
CCDC88A-202ENST00000336838 PRM1P04553 51 aa3.03□□□□□ -1.92
CCDC88A-202ENST00000336838 KRTAP4-7Q9BYR0 210 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms