RNA–Protein interactions for RNA: ENST00000309469.8

ATG4D-201, Transcript of autophagy related 4D cysteine peptidase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATG4D, Length 1,949 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-201ENST00000309469 A0A1B0GU69 56 aa10.96□□□□□ -0.66
ATG4D-201ENST00000309469 SPTSSBQ8NFR3 76 aa10.92□□□□□ -0.66
ATG4D-201ENST00000309469 LPAP08519 4548 aa10.92□□□□□ -0.66
ATG4D-201ENST00000309469 LRP2P98164 4655 aa10.9□□□□□ -0.66
ATG4D-201ENST00000309469 A6NN06 94 aa10.86□□□□□ -0.67
ATG4D-201ENST00000309469 KTN1-AS1Q86SY8 53 aa10.84□□□□□ -0.67
ATG4D-201ENST00000309469 SEC61BP60468 96 aaKnown RBP10.8□□□□□ -0.68
ATG4D-201ENST00000309469 SEC61GP60059 68 aa10.76□□□□□ -0.69
ATG4D-201ENST00000309469 RBM12B-AS1Q9P1G2 102 aa10.7□□□□□ -0.7
ATG4D-201ENST00000309469 H1FX-AS1Q4G0G2 97 aa10.7□□□□□ -0.7
ATG4D-201ENST00000309469 UQCR11O14957 56 aa10.69□□□□□ -0.7
ATG4D-201ENST00000309469 KRTAP3-3Q9BYR6 98 aa10.68□□□□□ -0.7
ATG4D-201ENST00000309469 S4R3F8 94 aa10.68□□□□□ -0.7
ATG4D-201ENST00000309469 SPATA8Q6RVD6 105 aa10.67□□□□□ -0.7
ATG4D-201ENST00000309469 PCLOQ9Y6V0 5065 aa10.61□□□□□ -0.71
ATG4D-201ENST00000309469 MIR22HGQ0VDD5 57 aa10.61□□□□□ -0.71
ATG4D-201ENST00000309469 KRTAP4-1Q9BYQ7 146 aa10.59□□□□□ -0.71
ATG4D-201ENST00000309469 MUC17Q685J3 4493 aa10.52□□□□□ -0.73
ATG4D-201ENST00000309469 A0A1B0GU33 70 aa10.48□□□□□ -0.73
ATG4D-201ENST00000309469 HERC1Q15751 4861 aa10.48□□□□□ -0.73
ATG4D-201ENST00000309469 HMCN2Q8NDA2 5059 aa10.42□□□□□ -0.74
ATG4D-201ENST00000309469 H0YAA0 97 aa10.41□□□□□ -0.74
ATG4D-201ENST00000309469 CSAG1Q6PB30 78 aa10.41□□□□□ -0.74
ATG4D-201ENST00000309469 KRTAP10-6P60371 365 aaPredicted RBP10.38□□□□□ -0.75
ATG4D-201ENST00000309469 KRTAP3-2Q9BYR7 98 aa10.37□□□□□ -0.75
ATG4D-201ENST00000309469 KRTAP19-2Q3LHN2 52 aa10.35□□□□□ -0.75
ATG4D-201ENST00000309469 ADM2Q7Z4H4 148 aa10.27□□□□□ -0.77
ATG4D-201ENST00000309469 P0C880 135 aa10.25□□□□□ -0.77
ATG4D-201ENST00000309469 PRAC1Q96KF2 57 aa10.19□□□□□ -0.78
ATG4D-201ENST00000309469 MUC2Q02817 5179 aa10.17□□□□□ -0.78
ATG4D-201ENST00000309469 KRTAP13-4Q3LI77 160 aa10.14□□□□□ -0.79
ATG4D-201ENST00000309469 K7ERS5 55 aa10.04□□□□□ -0.8
ATG4D-201ENST00000309469 A0A0D9SG42 100 aa10.01□□□□□ -0.81
ATG4D-201ENST00000309469 LINC01554Q52M75 96 aa10.01□□□□□ -0.81
ATG4D-201ENST00000309469 LCE2CQ5TA81 110 aa9.99□□□□□ -0.81
ATG4D-201ENST00000309469 M0QZ58 72 aa9.98□□□□□ -0.81
ATG4D-201ENST00000309469 FLGP20930 4061 aaPredicted RBP9.98□□□□□ -0.81
ATG4D-201ENST00000309469 UBR4Q5T4S7 5183 aa9.9□□□□□ -0.82
ATG4D-201ENST00000309469 RNF213Q63HN8 5207 aa9.88□□□□□ -0.83
ATG4D-201ENST00000309469 LORP23490 312 aaPredicted RBP9.86□□□□□ -0.83
ATG4D-201ENST00000309469 R4GN34 69 aa9.86□□□□□ -0.83
ATG4D-201ENST00000309469 KRTAP25-1Q3LHN0 102 aa9.79□□□□□ -0.84
ATG4D-201ENST00000309469 KRTAP12-2P59991 146 aa9.78□□□□□ -0.84
ATG4D-201ENST00000309469 KRTAP12-1P59990 96 aa9.76□□□□□ -0.85
ATG4D-201ENST00000309469 MT1HP80294 61 aa9.76□□□□□ -0.85
ATG4D-201ENST00000309469 SPINT4Q6UDR6 99 aa9.74□□□□□ -0.85
ATG4D-201ENST00000309469 FAT4Q6V0I7 4981 aa9.72□□□□□ -0.85
ATG4D-201ENST00000309469 M0R2T5 61 aa9.7□□□□□ -0.86
ATG4D-201ENST00000309469 ROMO1P60602 79 aa9.7□□□□□ -0.86
ATG4D-201ENST00000309469 CRIPTQ9P021 101 aa9.64□□□□□ -0.87
ATG4D-201ENST00000309469 KRTAP9-8Q9BYQ0 159 aa9.45□□□□□ -0.9
ATG4D-201ENST00000309469 MT2AP02795 61 aa9.44□□□□□ -0.9
ATG4D-201ENST00000309469 MT1FP04733 61 aa9.41□□□□□ -0.9
ATG4D-201ENST00000309469 KRTAP10-10P60014 251 aa9.39□□□□□ -0.91
ATG4D-201ENST00000309469 SPRR2GQ9BYE4 73 aa9.39□□□□□ -0.91
ATG4D-201ENST00000309469 KRTAP19-1Q8IUB9 90 aa9.35□□□□□ -0.91
ATG4D-201ENST00000309469 CAMK2N1Q7Z7J9 78 aa9.28□□□□□ -0.92
ATG4D-201ENST00000309469 C10orf95Q9H7T3 257 aa9.26□□□□□ -0.93
ATG4D-201ENST00000309469 LCE2AQ5TA79 106 aaPredicted RBP9.15□□□□□ -0.94
ATG4D-201ENST00000309469 PLAC4Q8WY50 150 aa9.15□□□□□ -0.94
ATG4D-201ENST00000309469 KRTAP19-8Q3LI54 63 aa9.09□□□□□ -0.95
ATG4D-201ENST00000309469 KRTAP9-3Q9BYQ3 159 aa9.09□□□□□ -0.95
ATG4D-201ENST00000309469 H3BS24 57 aa8.99□□□□□ -0.97
ATG4D-201ENST00000309469 MT1BP07438 61 aa8.97□□□□□ -0.97
ATG4D-201ENST00000309469 KRTAP15-1Q3LI76 137 aa8.93□□□□□ -0.98
ATG4D-201ENST00000309469 TNP1P09430 55 aa8.87□□□□□ -0.99
ATG4D-201ENST00000309469 PP632Q6XCG6 107 aa8.8□□□□□ -1
ATG4D-201ENST00000309469 LCE2BO14633 110 aa8.8□□□□□ -1
ATG4D-201ENST00000309469 KRTAP10-5P60370 271 aa8.74□□□□□ -1.01
ATG4D-201ENST00000309469 MT1XP80297 61 aa8.74□□□□□ -1.01
ATG4D-201ENST00000309469 KRTAP23-1A1A580 65 aa8.66□□□□□ -1.02
ATG4D-201ENST00000309469 PRO2289Q9P1D8 64 aa8.58□□□□□ -1.04
ATG4D-201ENST00000309469 NDUFAF8A1L188 74 aa8.58□□□□□ -1.04
ATG4D-201ENST00000309469 LCE3AQ5TA76 89 aa8.46□□□□□ -1.06
ATG4D-201ENST00000309469 USH2AO75445 5202 aa8.45□□□□□ -1.06
ATG4D-201ENST00000309469 KRTAP10-7P60409 375 aaPredicted RBP8.42□□□□□ -1.06
ATG4D-201ENST00000309469 KRTAP10-12P60413 245 aa8.37□□□□□ -1.07
ATG4D-201ENST00000309469 KRTAP8-1Q8IUC2 63 aa8.29□□□□□ -1.08
ATG4D-201ENST00000309469 LCE2DQ5TA82 110 aaPredicted RBP8.19□□□□□ -1.1
ATG4D-201ENST00000309469 KRTAP19-6Q3LI70 58 aa8.16□□□□□ -1.1
ATG4D-201ENST00000309469 LUZP6Q538Z0 58 aa8.15□□□□□ -1.1
ATG4D-201ENST00000309469 SSPOA2VEC9 5147 aa8.14□□□□□ -1.11
ATG4D-201ENST00000309469 KRTAP12-3P60328 96 aa8.11□□□□□ -1.11
ATG4D-201ENST00000309469 SPRR5A0A1B0GTR4 108 aa8.07□□□□□ -1.12
ATG4D-201ENST00000309469 KRTAP4-8A0A0G2JLE6 195 aa8.03□□□□□ -1.12
ATG4D-201ENST00000309469 KRTAP4-8Q9BYQ9 185 aa8.03□□□□□ -1.12
ATG4D-201ENST00000309469 FSIP2Q5CZC0 6907 aa7.98□□□□□ -1.13
ATG4D-201ENST00000309469 KRTAP19-5Q3LI72 72 aa7.97□□□□□ -1.13
ATG4D-201ENST00000309469 KMT2DO14686 5537 aa7.91□□□□□ -1.14
ATG4D-201ENST00000309469 KRTAP19-7Q3SYF9 63 aa7.8□□□□□ -1.16
ATG4D-201ENST00000309469 A0A0A0MQY5 61 aa7.76□□□□□ -1.17
ATG4D-201ENST00000309469 FCGBPQ9Y6R7 5405 aaPredicted RBP7.73□□□□□ -1.17
ATG4D-201ENST00000309469 KRTAP9-2Q9BYQ4 174 aa7.72□□□□□ -1.17
ATG4D-201ENST00000309469 MT1EP04732 61 aa7.64□□□□□ -1.19
ATG4D-201ENST00000309469 LCE3CQ5T5A8 94 aa7.6□□□□□ -1.19
ATG4D-201ENST00000309469 MT1LQ93083 61 aa7.53□□□□□ -1.2
ATG4D-201ENST00000309469 CRCT1Q9UGL9 99 aa7.5□□□□□ -1.21
ATG4D-201ENST00000309469 KRTAP19-4Q3LI73 84 aa7.49□□□□□ -1.21
ATG4D-201ENST00000309469 KRTAP4-7Q9BYR0 210 aa7.38□□□□□ -1.23
ATG4D-201ENST00000309469 MACF1Q9UPN3 7388 aaKnown RBP7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms