RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 RYR3Q15413 4870 aa5.92□□□□□ -1.46
LSM3-201ENST00000306024 KRTAP10-8P60410 259 aa5.91□□□□□ -1.46
LSM3-201ENST00000306024 DNAH8Q96JB1 4490 aa5.91□□□□□ -1.46
LSM3-201ENST00000306024 COX6B2Q6YFQ2 88 aa5.9□□□□□ -1.46
LSM3-201ENST00000306024 FRAS1Q86XX4 4008 aa5.9□□□□□ -1.46
LSM3-201ENST00000306024 A0A0A0MQY5 61 aa5.89□□□□□ -1.47
LSM3-201ENST00000306024 KRTAP4-5Q9BYR2 181 aa5.89□□□□□ -1.47
LSM3-201ENST00000306024 PKD1P98161 4303 aa5.89□□□□□ -1.47
LSM3-201ENST00000306024 C10orf95Q9H7T3 257 aa5.87□□□□□ -1.47
LSM3-201ENST00000306024 VPS13BQ7Z7G8 4022 aa5.84□□□□□ -1.47
LSM3-201ENST00000306024 APOBP04114 4563 aaKnown RBP5.84□□□□□ -1.47
LSM3-201ENST00000306024 RYR1P21817 5038 aa5.81□□□□□ -1.48
LSM3-201ENST00000306024 MT1HL1P0DM35 61 aa5.8□□□□□ -1.48
LSM3-201ENST00000306024 KRTAP17-1Q9BYP8 105 aa5.79□□□□□ -1.48
LSM3-201ENST00000306024 LUZP6Q538Z0 58 aa5.77□□□□□ -1.49
LSM3-201ENST00000306024 TPRXLQ17RH7 258 aa5.76□□□□□ -1.49
LSM3-201ENST00000306024 EPPK1P58107 5090 aaKnown RBP5.76□□□□□ -1.49
LSM3-201ENST00000306024 HSPG2P98160 4391 aa5.72□□□□□ -1.49
LSM3-201ENST00000306024 LRP1Q07954 4544 aaKnown RBP5.69□□□□□ -1.5
LSM3-201ENST00000306024 SEC61BP60468 96 aaKnown RBP5.68□□□□□ -1.5
LSM3-201ENST00000306024 XP32Q5T750 250 aa5.68□□□□□ -1.5
LSM3-201ENST00000306024 KRTAP3-1Q9BYR8 98 aa5.67□□□□□ -1.5
LSM3-201ENST00000306024 S4R3F8 94 aa5.67□□□□□ -1.5
LSM3-201ENST00000306024 BIRC6Q9NR09 4857 aa5.67□□□□□ -1.5
LSM3-201ENST00000306024 KRTAP15-1Q3LI76 137 aa5.64□□□□□ -1.51
LSM3-201ENST00000306024 MYCBP2O75592 4640 aa5.62□□□□□ -1.51
LSM3-201ENST00000306024 HERC2O95714 4834 aa5.6□□□□□ -1.51
LSM3-201ENST00000306024 KRTAP13-4Q3LI77 160 aa5.57□□□□□ -1.52
LSM3-201ENST00000306024 KRTAP12-2P59991 146 aa5.51□□□□□ -1.53
LSM3-201ENST00000306024 KRTAP10-6P60371 365 aaPredicted RBP5.51□□□□□ -1.53
LSM3-201ENST00000306024 FAT3Q8TDW7 4589 aa5.48□□□□□ -1.53
LSM3-201ENST00000306024 ABCA13Q86UQ4 5058 aa5.48□□□□□ -1.53
LSM3-201ENST00000306024 PLAC4Q8WY50 150 aa5.48□□□□□ -1.53
LSM3-201ENST00000306024 M0QZ58 72 aa5.42□□□□□ -1.54
LSM3-201ENST00000306024 PKHD1L1Q86WI1 4243 aa5.42□□□□□ -1.54
LSM3-201ENST00000306024 KRTAP12-1P59990 96 aa5.42□□□□□ -1.54
LSM3-201ENST00000306024 R4GN34 69 aa5.41□□□□□ -1.54
LSM3-201ENST00000306024 KRTAP3-2Q9BYR7 98 aa5.39□□□□□ -1.55
LSM3-201ENST00000306024 TNXBP22105 4242 aa5.38□□□□□ -1.55
LSM3-201ENST00000306024 M0R2T5 61 aa5.37□□□□□ -1.55
LSM3-201ENST00000306024 KRTAP3-3Q9BYR6 98 aa5.35□□□□□ -1.55
LSM3-201ENST00000306024 CAMK2N1Q7Z7J9 78 aa5.33□□□□□ -1.56
LSM3-201ENST00000306024 LRP2P98164 4655 aa5.31□□□□□ -1.56
LSM3-201ENST00000306024 PCLOQ9Y6V0 5065 aa5.29□□□□□ -1.56
LSM3-201ENST00000306024 HERC1Q15751 4861 aa5.23□□□□□ -1.57
LSM3-201ENST00000306024 LPAP08519 4548 aa5.23□□□□□ -1.57
LSM3-201ENST00000306024 KRTAP4-1Q9BYQ7 146 aa5.21□□□□□ -1.58
LSM3-201ENST00000306024 PP632Q6XCG6 107 aa5.16□□□□□ -1.58
LSM3-201ENST00000306024 HMCN2Q8NDA2 5059 aa5.06□□□□□ -1.6
LSM3-201ENST00000306024 TNP1P09430 55 aa5□□□□□ -1.61
LSM3-201ENST00000306024 KRTAP10-10P60014 251 aa4.98□□□□□ -1.61
LSM3-201ENST00000306024 UBR4Q5T4S7 5183 aa4.95□□□□□ -1.62
LSM3-201ENST00000306024 MUC2Q02817 5179 aa4.92□□□□□ -1.62
LSM3-201ENST00000306024 RNF213Q63HN8 5207 aa4.92□□□□□ -1.62
LSM3-201ENST00000306024 MT1HP80294 61 aa4.9□□□□□ -1.62
LSM3-201ENST00000306024 LORP23490 312 aaPredicted RBP4.86□□□□□ -1.63
LSM3-201ENST00000306024 LCE2CQ5TA81 110 aa4.86□□□□□ -1.63
LSM3-201ENST00000306024 KRTAP19-2Q3LHN2 52 aa4.85□□□□□ -1.63
LSM3-201ENST00000306024 PRO2289Q9P1D8 64 aa4.85□□□□□ -1.63
LSM3-201ENST00000306024 MUC17Q685J3 4493 aa4.8□□□□□ -1.64
LSM3-201ENST00000306024 FAT4Q6V0I7 4981 aa4.78□□□□□ -1.64
LSM3-201ENST00000306024 FLGP20930 4061 aaPredicted RBP4.74□□□□□ -1.65
LSM3-201ENST00000306024 MT2AP02795 61 aa4.73□□□□□ -1.65
LSM3-201ENST00000306024 INE1O15225 51 aa4.71□□□□□ -1.66
LSM3-201ENST00000306024 MT1FP04733 61 aa4.69□□□□□ -1.66
LSM3-201ENST00000306024 KRTAP9-8Q9BYQ0 159 aa4.64□□□□□ -1.67
LSM3-201ENST00000306024 KRTAP23-1A1A580 65 aa4.6□□□□□ -1.67
LSM3-201ENST00000306024 LCE2AQ5TA79 106 aaPredicted RBP4.58□□□□□ -1.68
LSM3-201ENST00000306024 SPRR5A0A1B0GTR4 108 aa4.58□□□□□ -1.68
LSM3-201ENST00000306024 SPRR2GQ9BYE4 73 aa4.56□□□□□ -1.68
LSM3-201ENST00000306024 KRTAP19-1Q8IUB9 90 aa4.54□□□□□ -1.68
LSM3-201ENST00000306024 LCE2DQ5TA82 110 aaPredicted RBP4.53□□□□□ -1.68
LSM3-201ENST00000306024 LCE3AQ5TA76 89 aa4.49□□□□□ -1.69
LSM3-201ENST00000306024 KRTAP9-3Q9BYQ3 159 aa4.48□□□□□ -1.69
LSM3-201ENST00000306024 KRTAP19-8Q3LI54 63 aa4.41□□□□□ -1.7
LSM3-201ENST00000306024 LCE2BO14633 110 aa4.38□□□□□ -1.71
LSM3-201ENST00000306024 MT1BP07438 61 aa4.38□□□□□ -1.71
LSM3-201ENST00000306024 FSIP2Q5CZC0 6907 aa4.37□□□□□ -1.71
LSM3-201ENST00000306024 KRTAP12-3P60328 96 aa4.31□□□□□ -1.72
LSM3-201ENST00000306024 MT1XP80297 61 aa4.24□□□□□ -1.73
LSM3-201ENST00000306024 KRTAP10-12P60413 245 aa4.23□□□□□ -1.73
LSM3-201ENST00000306024 KRTAP10-5P60370 271 aa4.22□□□□□ -1.73
LSM3-201ENST00000306024 KRTAP8-1Q8IUC2 63 aa4.22□□□□□ -1.73
LSM3-201ENST00000306024 KRTAP9-2Q9BYQ4 174 aa4.21□□□□□ -1.74
LSM3-201ENST00000306024 USH2AO75445 5202 aa4.18□□□□□ -1.74
LSM3-201ENST00000306024 KRTAP10-7P60409 375 aaPredicted RBP4.14□□□□□ -1.75
LSM3-201ENST00000306024 CRCT1Q9UGL9 99 aa4.1□□□□□ -1.75
LSM3-201ENST00000306024 KRTAP19-6Q3LI70 58 aa4.1□□□□□ -1.75
LSM3-201ENST00000306024 OBSCNQ5VST9 7968 aa4.09□□□□□ -1.75
LSM3-201ENST00000306024 KRTAP4-8A0A0G2JLE6 195 aa4.02□□□□□ -1.77
LSM3-201ENST00000306024 KRTAP4-8Q9BYQ9 185 aa4.02□□□□□ -1.77
LSM3-201ENST00000306024 SSPOA2VEC9 5147 aa4.01□□□□□ -1.77
LSM3-201ENST00000306024 LCE3CQ5T5A8 94 aa3.97□□□□□ -1.77
LSM3-201ENST00000306024 KRTAP19-5Q3LI72 72 aa3.95□□□□□ -1.78
LSM3-201ENST00000306024 SPRR2FQ96RM1 72 aa3.92□□□□□ -1.78
LSM3-201ENST00000306024 KRTAP9-6A0A140TA67 174 aa3.92□□□□□ -1.78
LSM3-201ENST00000306024 FCGBPQ9Y6R7 5405 aaPredicted RBP3.91□□□□□ -1.78
LSM3-201ENST00000306024 KMT2DO14686 5537 aa3.85□□□□□ -1.79
LSM3-201ENST00000306024 MACF1Q9UPN3 7388 aaKnown RBP3.78□□□□□ -1.8
LSM3-201ENST00000306024 KRTAP19-7Q3SYF9 63 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms