RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 HECTD4Q9Y4D8 3996 aa7.92□□□□□ -1.14
SHH-201ENST00000297261 DNAH17Q9UFH2 4485 aa7.9□□□□□ -1.14
SHH-201ENST00000297261 DNAH5Q8TE73 4624 aa7.85□□□□□ -1.15
SHH-201ENST00000297261 KRTAP10-4P60372 401 aaPredicted RBP7.84□□□□□ -1.15
SHH-201ENST00000297261 PKD1P98161 4303 aa7.83□□□□□ -1.16
SHH-201ENST00000297261 TPRXLQ17RH7 258 aa7.81□□□□□ -1.16
SHH-201ENST00000297261 DNAH8Q96JB1 4490 aa7.81□□□□□ -1.16
SHH-201ENST00000297261 KRTAP3-1Q9BYR8 98 aa7.8□□□□□ -1.16
SHH-201ENST00000297261 FAT2Q9NYQ8 4349 aa7.77□□□□□ -1.17
SHH-201ENST00000297261 TNP1P09430 55 aa7.74□□□□□ -1.17
SHH-201ENST00000297261 KRTAP12-2P59991 146 aa7.74□□□□□ -1.17
SHH-201ENST00000297261 LRP1BQ9NZR2 4599 aa7.73□□□□□ -1.17
SHH-201ENST00000297261 DYNC1H1Q14204 4646 aaKnown RBP7.7□□□□□ -1.18
SHH-201ENST00000297261 PP632Q6XCG6 107 aa7.67□□□□□ -1.18
SHH-201ENST00000297261 FAT1Q14517 4588 aa7.66□□□□□ -1.18
SHH-201ENST00000297261 MT1HL1P0DM35 61 aa7.65□□□□□ -1.19
SHH-201ENST00000297261 KRTAP13-4Q3LI77 160 aa7.64□□□□□ -1.19
SHH-201ENST00000297261 PKHD1L1Q86WI1 4243 aa7.62□□□□□ -1.19
SHH-201ENST00000297261 KRTAP12-1P59990 96 aa7.61□□□□□ -1.19
SHH-201ENST00000297261 PKHD1P08F94 4074 aa7.6□□□□□ -1.19
SHH-201ENST00000297261 HYDINQ4G0P3 5121 aa7.59□□□□□ -1.19
SHH-201ENST00000297261 KRTAP10-6P60371 365 aaPredicted RBP7.58□□□□□ -1.2
SHH-201ENST00000297261 KRTAP4-5Q9BYR2 181 aa7.58□□□□□ -1.2
SHH-201ENST00000297261 SACSQ9NZJ4 4579 aa7.52□□□□□ -1.21
SHH-201ENST00000297261 VPS13BQ7Z7G8 4022 aa7.52□□□□□ -1.21
SHH-201ENST00000297261 RYR2Q92736 4967 aa7.38□□□□□ -1.23
SHH-201ENST00000297261 KRTAP15-1Q3LI76 137 aa7.38□□□□□ -1.23
SHH-201ENST00000297261 KIAA1109Q2LD37 5005 aa7.36□□□□□ -1.23
SHH-201ENST00000297261 KRTAP3-2Q9BYR7 98 aa7.34□□□□□ -1.23
SHH-201ENST00000297261 APOBP04114 4563 aaKnown RBP7.32□□□□□ -1.24
SHH-201ENST00000297261 KRTAP3-3Q9BYR6 98 aa7.31□□□□□ -1.24
SHH-201ENST00000297261 RYR3Q15413 4870 aa7.31□□□□□ -1.24
SHH-201ENST00000297261 RYR1P21817 5038 aa7.3□□□□□ -1.24
SHH-201ENST00000297261 KMT2CQ8NEZ4 4911 aaKnown RBP7.26□□□□□ -1.25
SHH-201ENST00000297261 KRTAP17-1Q9BYP8 105 aa7.26□□□□□ -1.25
SHH-201ENST00000297261 FAT3Q8TDW7 4589 aa7.25□□□□□ -1.25
SHH-201ENST00000297261 LRP1Q07954 4544 aaKnown RBP7.24□□□□□ -1.25
SHH-201ENST00000297261 MYCBP2O75592 4640 aa7.22□□□□□ -1.25
SHH-201ENST00000297261 HSPG2P98160 4391 aa7.14□□□□□ -1.27
SHH-201ENST00000297261 KRTAP10-10P60014 251 aa7.11□□□□□ -1.27
SHH-201ENST00000297261 TNXBP22105 4242 aa7.07□□□□□ -1.28
SHH-201ENST00000297261 KRTAP4-1Q9BYQ7 146 aa6.93□□□□□ -1.3
SHH-201ENST00000297261 HERC2O95714 4834 aa6.88□□□□□ -1.31
SHH-201ENST00000297261 EPPK1P58107 5090 aaKnown RBP6.87□□□□□ -1.31
SHH-201ENST00000297261 LORP23490 312 aaPredicted RBP6.82□□□□□ -1.32
SHH-201ENST00000297261 LRP2P98164 4655 aa6.81□□□□□ -1.32
SHH-201ENST00000297261 PRO2289Q9P1D8 64 aa6.79□□□□□ -1.32
SHH-201ENST00000297261 BIRC6Q9NR09 4857 aa6.77□□□□□ -1.33
SHH-201ENST00000297261 LPAP08519 4548 aa6.67□□□□□ -1.34
SHH-201ENST00000297261 ABCA13Q86UQ4 5058 aa6.64□□□□□ -1.35
SHH-201ENST00000297261 INE1O15225 51 aa6.63□□□□□ -1.35
SHH-201ENST00000297261 LCE3AQ5TA76 89 aa6.5□□□□□ -1.37
SHH-201ENST00000297261 MT1HP80294 61 aa6.5□□□□□ -1.37
SHH-201ENST00000297261 KRTAP23-1A1A580 65 aa6.47□□□□□ -1.37
SHH-201ENST00000297261 MUC17Q685J3 4493 aa6.47□□□□□ -1.37
SHH-201ENST00000297261 KRTAP10-12P60413 245 aa6.45□□□□□ -1.38
SHH-201ENST00000297261 KRTAP12-3P60328 96 aa6.44□□□□□ -1.38
SHH-201ENST00000297261 HERC1Q15751 4861 aa6.42□□□□□ -1.38
SHH-201ENST00000297261 MT2AP02795 61 aa6.35□□□□□ -1.39
SHH-201ENST00000297261 PCLOQ9Y6V0 5065 aa6.31□□□□□ -1.4
SHH-201ENST00000297261 MT1FP04733 61 aa6.3□□□□□ -1.4
SHH-201ENST00000297261 LCE2CQ5TA81 110 aa6.26□□□□□ -1.41
SHH-201ENST00000297261 SPRR2GQ9BYE4 73 aa6.26□□□□□ -1.41
SHH-201ENST00000297261 KRTAP19-2Q3LHN2 52 aa6.26□□□□□ -1.41
SHH-201ENST00000297261 MUC2Q02817 5179 aa6.21□□□□□ -1.42
SHH-201ENST00000297261 KRTAP19-1Q8IUB9 90 aa6.14□□□□□ -1.43
SHH-201ENST00000297261 CRCT1Q9UGL9 99 aa6.13□□□□□ -1.43
SHH-201ENST00000297261 HMCN2Q8NDA2 5059 aa6.12□□□□□ -1.43
SHH-201ENST00000297261 FLGP20930 4061 aaPredicted RBP6.1□□□□□ -1.43
SHH-201ENST00000297261 KRTAP9-8Q9BYQ0 159 aa6.07□□□□□ -1.44
SHH-201ENST00000297261 RNF213Q63HN8 5207 aa6.05□□□□□ -1.44
SHH-201ENST00000297261 FAT4Q6V0I7 4981 aa6.02□□□□□ -1.45
SHH-201ENST00000297261 UBR4Q5T4S7 5183 aa6.01□□□□□ -1.45
SHH-201ENST00000297261 KRTAP19-8Q3LI54 63 aa5.96□□□□□ -1.46
SHH-201ENST00000297261 KRTAP8-1Q8IUC2 63 aa5.93□□□□□ -1.46
SHH-201ENST00000297261 MT1BP07438 61 aa5.89□□□□□ -1.47
SHH-201ENST00000297261 KRTAP9-3Q9BYQ3 159 aa5.87□□□□□ -1.47
SHH-201ENST00000297261 KRTAP10-5P60370 271 aa5.86□□□□□ -1.47
SHH-201ENST00000297261 SPRR5A0A1B0GTR4 108 aa5.82□□□□□ -1.48
SHH-201ENST00000297261 MT1XP80297 61 aa5.81□□□□□ -1.48
SHH-201ENST00000297261 KRTAP19-5Q3LI72 72 aa5.76□□□□□ -1.49
SHH-201ENST00000297261 KRTAP10-7P60409 375 aaPredicted RBP5.75□□□□□ -1.49
SHH-201ENST00000297261 LCE3CQ5T5A8 94 aa5.72□□□□□ -1.49
SHH-201ENST00000297261 LCE2BO14633 110 aa5.69□□□□□ -1.5
SHH-201ENST00000297261 LCE2AQ5TA79 106 aaPredicted RBP5.62□□□□□ -1.51
SHH-201ENST00000297261 KRTAP4-8A0A0G2JLE6 195 aa5.52□□□□□ -1.53
SHH-201ENST00000297261 KRTAP4-8Q9BYQ9 185 aa5.52□□□□□ -1.53
SHH-201ENST00000297261 FSIP2Q5CZC0 6907 aa5.51□□□□□ -1.53
SHH-201ENST00000297261 SPRR2FQ96RM1 72 aa5.37□□□□□ -1.55
SHH-201ENST00000297261 SYNE1Q8NF91 8797 aaKnown RBP5.36□□□□□ -1.55
SHH-201ENST00000297261 KRTAP12-4P60329 112 aa5.33□□□□□ -1.56
SHH-201ENST00000297261 USH2AO75445 5202 aa5.3□□□□□ -1.56
SHH-201ENST00000297261 KRTAP19-6Q3LI70 58 aa5.25□□□□□ -1.57
SHH-201ENST00000297261 KRTAP4-7Q9BYR0 210 aa5.25□□□□□ -1.57
SHH-201ENST00000297261 KRTAP19-4Q3LI73 84 aa5.21□□□□□ -1.57
SHH-201ENST00000297261 MT1GP13640 62 aa5.19□□□□□ -1.58
SHH-201ENST00000297261 LCE3BQ5TA77 95 aa5.18□□□□□ -1.58
SHH-201ENST00000297261 MT1EP04732 61 aa5.13□□□□□ -1.59
SHH-201ENST00000297261 LCE2DQ5TA82 110 aaPredicted RBP5.12□□□□□ -1.59
SHH-201ENST00000297261 OBSCNQ5VST9 7968 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 117.7 ms