RNA–Protein interactions for RNA: ENST00000295324.3

CDC42EP3-201, Transcript of CDC42 effector protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDC42EP3, Length 5,700 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42EP3-201ENST00000295324 VPS13CQ709C8 3753 aa7.71□□□□□ -1.17
CDC42EP3-201ENST00000295324 DNAH1Q9P2D7 4330 aa7.66□□□□□ -1.18
CDC42EP3-201ENST00000295324 AKAP9Q99996 3911 aa7.65□□□□□ -1.18
CDC42EP3-201ENST00000295324 DNAH10Q8IVF4 4471 aa7.64□□□□□ -1.19
CDC42EP3-201ENST00000295324 ZNF469Q96JG9 3925 aaPredicted RBP7.59□□□□□ -1.19
CDC42EP3-201ENST00000295324 CRCT1Q9UGL9 99 aa7.55□□□□□ -1.2
CDC42EP3-201ENST00000295324 KRTAP12-3P60328 96 aa7.54□□□□□ -1.2
CDC42EP3-201ENST00000295324 LORP23490 312 aaPredicted RBP7.52□□□□□ -1.21
CDC42EP3-201ENST00000295324 KRTAP4-1Q9BYQ7 146 aa7.51□□□□□ -1.21
CDC42EP3-201ENST00000295324 DYNC1H1Q14204 4646 aaKnown RBP7.49□□□□□ -1.21
CDC42EP3-201ENST00000295324 VPS13DQ5THJ4 4388 aa7.47□□□□□ -1.21
CDC42EP3-201ENST00000295324 MT1HP80294 61 aa7.47□□□□□ -1.21
CDC42EP3-201ENST00000295324 KRTAP23-1A1A580 65 aa7.47□□□□□ -1.21
CDC42EP3-201ENST00000295324 KRTAP8-1Q8IUC2 63 aa7.43□□□□□ -1.22
CDC42EP3-201ENST00000295324 CSMD3Q7Z407 3707 aa7.41□□□□□ -1.22
CDC42EP3-201ENST00000295324 RYR1P21817 5038 aa7.41□□□□□ -1.22
CDC42EP3-201ENST00000295324 LCE3AQ5TA76 89 aa7.41□□□□□ -1.22
CDC42EP3-201ENST00000295324 DNAH17Q9UFH2 4485 aa7.4□□□□□ -1.23
CDC42EP3-201ENST00000295324 LRP1BQ9NZR2 4599 aa7.37□□□□□ -1.23
CDC42EP3-201ENST00000295324 MT2AP02795 61 aa7.33□□□□□ -1.24
CDC42EP3-201ENST00000295324 DNAH2Q9P225 4427 aa7.33□□□□□ -1.24
CDC42EP3-201ENST00000295324 FAT1Q14517 4588 aa7.32□□□□□ -1.24
CDC42EP3-201ENST00000295324 STARD9Q9P2P6 4700 aa7.26□□□□□ -1.25
CDC42EP3-201ENST00000295324 SACSQ9NZJ4 4579 aa7.23□□□□□ -1.25
CDC42EP3-201ENST00000295324 FAT2Q9NYQ8 4349 aa7.23□□□□□ -1.25
CDC42EP3-201ENST00000295324 SPRR2GQ9BYE4 73 aa7.21□□□□□ -1.26
CDC42EP3-201ENST00000295324 DYNC2H1Q8NCM8 4307 aaKnown RBP7.18□□□□□ -1.26
CDC42EP3-201ENST00000295324 PRKDCP78527 4128 aaKnown RBP7.16□□□□□ -1.26
CDC42EP3-201ENST00000295324 MT1FP04733 61 aa7.15□□□□□ -1.26
CDC42EP3-201ENST00000295324 KIAA1109Q2LD37 5005 aa7.1□□□□□ -1.27
CDC42EP3-201ENST00000295324 ANK2Q01484 3957 aa7.07□□□□□ -1.28
CDC42EP3-201ENST00000295324 RYR3Q15413 4870 aa7.07□□□□□ -1.28
CDC42EP3-201ENST00000295324 KRTAP10-5P60370 271 aa7.05□□□□□ -1.28
CDC42EP3-201ENST00000295324 DNAH8Q96JB1 4490 aa7.03□□□□□ -1.28
CDC42EP3-201ENST00000295324 DNAH3Q8TD57 4116 aa6.99□□□□□ -1.29
CDC42EP3-201ENST00000295324 APOBP04114 4563 aaKnown RBP6.99□□□□□ -1.29
CDC42EP3-201ENST00000295324 KRTAP17-1Q9BYP8 105 aa6.99□□□□□ -1.29
CDC42EP3-201ENST00000295324 SPRR2FQ96RM1 72 aa6.96□□□□□ -1.3
CDC42EP3-201ENST00000295324 RYR2Q92736 4967 aa6.9□□□□□ -1.3
CDC42EP3-201ENST00000295324 VPS13BQ7Z7G8 4022 aa6.85□□□□□ -1.31
CDC42EP3-201ENST00000295324 KMT2AQ03164 3969 aa6.84□□□□□ -1.32
CDC42EP3-201ENST00000295324 BIRC6Q9NR09 4857 aa6.82□□□□□ -1.32
CDC42EP3-201ENST00000295324 KRTAP10-7P60409 375 aaPredicted RBP6.81□□□□□ -1.32
CDC42EP3-201ENST00000295324 FAT3Q8TDW7 4589 aa6.8□□□□□ -1.32
CDC42EP3-201ENST00000295324 DNAH6Q9C0G6 4158 aa6.77□□□□□ -1.33
CDC42EP3-201ENST00000295324 KRTAP19-8Q3LI54 63 aa6.77□□□□□ -1.33
CDC42EP3-201ENST00000295324 HERC2O95714 4834 aa6.77□□□□□ -1.33
CDC42EP3-201ENST00000295324 KRTAP19-5Q3LI72 72 aa6.76□□□□□ -1.33
CDC42EP3-201ENST00000295324 LYSTQ99698 3801 aa6.75□□□□□ -1.33
CDC42EP3-201ENST00000295324 MYCBP2O75592 4640 aa6.72□□□□□ -1.33
CDC42EP3-201ENST00000295324 KRTAP19-1Q8IUB9 90 aa6.71□□□□□ -1.33
CDC42EP3-201ENST00000295324 KRTAP19-4Q3LI73 84 aa6.7□□□□□ -1.34
CDC42EP3-201ENST00000295324 LRP1Q07954 4544 aaKnown RBP6.64□□□□□ -1.35
CDC42EP3-201ENST00000295324 HERC1Q15751 4861 aa6.6□□□□□ -1.35
CDC42EP3-201ENST00000295324 KRTAP9-8Q9BYQ0 159 aa6.59□□□□□ -1.35
CDC42EP3-201ENST00000295324 DNAH7Q8WXX0 4024 aa6.58□□□□□ -1.36
CDC42EP3-201ENST00000295324 SPRR2EP22531 72 aa6.57□□□□□ -1.36
CDC42EP3-201ENST00000295324 SPRR2BP35325 72 aa6.57□□□□□ -1.36
CDC42EP3-201ENST00000295324 SPRR2AP35326 72 aa6.57□□□□□ -1.36
CDC42EP3-201ENST00000295324 LCE3CQ5T5A8 94 aa6.57□□□□□ -1.36
CDC42EP3-201ENST00000295324 PCLOQ9Y6V0 5065 aa6.56□□□□□ -1.36
CDC42EP3-201ENST00000295324 LCE2CQ5TA81 110 aa6.53□□□□□ -1.36
CDC42EP3-201ENST00000295324 CMYA5Q8N3K9 4069 aa6.51□□□□□ -1.37
CDC42EP3-201ENST00000295324 MT1BP07438 61 aa6.51□□□□□ -1.37
CDC42EP3-201ENST00000295324 MT1XP80297 61 aa6.48□□□□□ -1.37
CDC42EP3-201ENST00000295324 PKD1P98161 4303 aa6.46□□□□□ -1.37
CDC42EP3-201ENST00000295324 KRTAP9-3Q9BYQ3 159 aa6.45□□□□□ -1.38
CDC42EP3-201ENST00000295324 HSPG2P98160 4391 aa6.45□□□□□ -1.38
CDC42EP3-201ENST00000295324 LRP2P98164 4655 aa6.37□□□□□ -1.39
CDC42EP3-201ENST00000295324 SPRR2DP22532 72 aa6.37□□□□□ -1.39
CDC42EP3-201ENST00000295324 HYDINQ4G0P3 5121 aa6.36□□□□□ -1.39
CDC42EP3-201ENST00000295324 HECTD4Q9Y4D8 3996 aa6.35□□□□□ -1.39
CDC42EP3-201ENST00000295324 PKHD1L1Q86WI1 4243 aa6.35□□□□□ -1.39
CDC42EP3-201ENST00000295324 LCE2BO14633 110 aa6.32□□□□□ -1.4
CDC42EP3-201ENST00000295324 MT1GP13640 62 aa6.25□□□□□ -1.41
CDC42EP3-201ENST00000295324 KRTAP4-8A0A0G2JLE6 195 aa6.22□□□□□ -1.41
CDC42EP3-201ENST00000295324 KRTAP4-8Q9BYQ9 185 aa6.22□□□□□ -1.41
CDC42EP3-201ENST00000295324 EPPK1P58107 5090 aaKnown RBP6.22□□□□□ -1.41
CDC42EP3-201ENST00000295324 FRAS1Q86XX4 4008 aa6.22□□□□□ -1.41
CDC42EP3-201ENST00000295324 KRTAP19-2Q3LHN2 52 aa6.21□□□□□ -1.41
CDC42EP3-201ENST00000295324 PKHD1P08F94 4074 aa6.17□□□□□ -1.42
CDC42EP3-201ENST00000295324 KRTAP12-4P60329 112 aa6.16□□□□□ -1.42
CDC42EP3-201ENST00000295324 KMT2CQ8NEZ4 4911 aaKnown RBP6.12□□□□□ -1.43
CDC42EP3-201ENST00000295324 ABCA13Q86UQ4 5058 aa6.08□□□□□ -1.44
CDC42EP3-201ENST00000295324 LCE3BQ5TA77 95 aa6.07□□□□□ -1.44
CDC42EP3-201ENST00000295324 KRTAP9-2Q9BYQ4 174 aa6.06□□□□□ -1.44
CDC42EP3-201ENST00000295324 LPAP08519 4548 aa6.03□□□□□ -1.44
CDC42EP3-201ENST00000295324 KRTAP19-3Q7Z4W3 81 aa6.01□□□□□ -1.45
CDC42EP3-201ENST00000295324 KRTAP19-6Q3LI70 58 aa5.98□□□□□ -1.45
CDC42EP3-201ENST00000295324 MUC17Q685J3 4493 aa5.97□□□□□ -1.45
CDC42EP3-201ENST00000295324 LCE2DQ5TA82 110 aaPredicted RBP5.92□□□□□ -1.46
CDC42EP3-201ENST00000295324 LCE2AQ5TA79 106 aaPredicted RBP5.92□□□□□ -1.46
CDC42EP3-201ENST00000295324 UBR4Q5T4S7 5183 aa5.89□□□□□ -1.47
CDC42EP3-201ENST00000295324 FLGP20930 4061 aaPredicted RBP5.88□□□□□ -1.47
CDC42EP3-201ENST00000295324 MT1EP04732 61 aa5.88□□□□□ -1.47
CDC42EP3-201ENST00000295324 TNXBP22105 4242 aa5.87□□□□□ -1.47
CDC42EP3-201ENST00000295324 MT1LQ93083 61 aa5.87□□□□□ -1.47
CDC42EP3-201ENST00000295324 SPRR5A0A1B0GTR4 108 aa5.84□□□□□ -1.48
CDC42EP3-201ENST00000295324 KRTAP9-6A0A140TA67 174 aa5.79□□□□□ -1.48
CDC42EP3-201ENST00000295324 RNF213Q63HN8 5207 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms