RNA–Protein interactions for RNA: ENST00000295324.3

CDC42EP3-201, Transcript of CDC42 effector protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDC42EP3, Length 5,700 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42EP3-201ENST00000295324 DCAF8L2P0C7V8 631 aa31.77■■■□□ 2.68
CDC42EP3-201ENST00000295324 NISCHQ9Y2I1 1504 aa31.02■■■□□ 2.56
CDC42EP3-201ENST00000295324 SUPT5HO00267 1087 aaKnown RBP29.62■■■□□ 2.33
CDC42EP3-201ENST00000295324 SHROOM4Q9ULL8 1493 aa29.32■■■□□ 2.28
CDC42EP3-201ENST00000295324 EHMT2Q96KQ7 1210 aa28.39■■■□□ 2.14
CDC42EP3-201ENST00000295324 FAM9AQ8IZU1 332 aaPredicted RBP28.19■■■□□ 2.1
CDC42EP3-201ENST00000295324 APLP2Q06481 763 aa28.16■■■□□ 2.1
CDC42EP3-201ENST00000295324 TRIM41Q8WV44 630 aa27.6■■■□□ 2.01
CDC42EP3-201ENST00000295324 RANGAP1P46060 587 aaPredicted RBP27.45■■□□□ 1.98
CDC42EP3-201ENST00000295324 ATP1B4Q9UN42 357 aaPredicted RBP27.33■■□□□ 1.97
CDC42EP3-201ENST00000295324 TTBK1Q5TCY1 1321 aaPredicted RBP27.32■■□□□ 1.96
CDC42EP3-201ENST00000295324 UBTFP17480 764 aaKnown RBP27.27■■□□□ 1.96
CDC42EP3-201ENST00000295324 ABCC9O60706 1549 aa27.08■■□□□ 1.93
CDC42EP3-201ENST00000295324 PELP1Q8IZL8 1130 aaKnown RBP27.03■■□□□ 1.92
CDC42EP3-201ENST00000295324 PCGF6Q9BYE7 350 aa26.89■■□□□ 1.89
CDC42EP3-201ENST00000295324 PABPN1Q86U42 306 aaKnown RBP eCLIP26.78■■□□□ 1.88
CDC42EP3-201ENST00000295324 CCER1Q8TC90 406 aaPredicted RBP26.65■■□□□ 1.86
CDC42EP3-201ENST00000295324 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.61■■□□□ 1.85
CDC42EP3-201ENST00000295324 HNRNPUL2Q1KMD3 747 aaKnown RBP26.61■■□□□ 1.85
CDC42EP3-201ENST00000295324 ZEB1P37275 1124 aaPredicted RBP26.56■■□□□ 1.84
CDC42EP3-201ENST00000295324 MYT1LQ9UL68 1186 aa26.52■■□□□ 1.84
CDC42EP3-201ENST00000295324 PPARGC1BQ86YN6 1023 aaKnown RBP26.29■■□□□ 1.8
CDC42EP3-201ENST00000295324 CHIC1Q5VXU3 224 aa26.24■■□□□ 1.79
CDC42EP3-201ENST00000295324 ITGAEP38570 1179 aa26.17■■□□□ 1.78
CDC42EP3-201ENST00000295324 CENPBP07199 599 aaPredicted RBP26.05■■□□□ 1.76
CDC42EP3-201ENST00000295324 TRIM26Q12899 539 aaPredicted RBP26.04■■□□□ 1.76
CDC42EP3-201ENST00000295324 LOC105371045A0A1W2PR82 267 aa26.04■■□□□ 1.76
CDC42EP3-201ENST00000295324 ERICH6Q7L0X2 663 aa25.99■■□□□ 1.75
CDC42EP3-201ENST00000295324 FBLN2P98095 1184 aa25.93■■□□□ 1.74
CDC42EP3-201ENST00000295324 SCRIBQ14160 1630 aa25.76■■□□□ 1.71
CDC42EP3-201ENST00000295324 POLR3GLQ9BT43 218 aa25.75■■□□□ 1.71
CDC42EP3-201ENST00000295324 NEFLP07196 543 aa25.72■■□□□ 1.71
CDC42EP3-201ENST00000295324 FAM50AQ14320 339 aaKnown RBP25.68■■□□□ 1.7
CDC42EP3-201ENST00000295324 CCDC180Q9P1Z9 1646 aa25.63■■□□□ 1.69
CDC42EP3-201ENST00000295324 ZCCHC6Q5VYS8 1495 aaKnown RBP25.61■■□□□ 1.69
CDC42EP3-201ENST00000295324 MYT1Q01538 1121 aa25.54■■□□□ 1.68
CDC42EP3-201ENST00000295324 YTHDC1Q96MU7 727 aaKnown RBP25.54■■□□□ 1.68
CDC42EP3-201ENST00000295324 TRIM52Q96A61 297 aa25.52■■□□□ 1.68
CDC42EP3-201ENST00000295324 SLC4A1APQ9BWU0 796 aaKnown RBP25.49■■□□□ 1.67
CDC42EP3-201ENST00000295324 CSRNP3Q8WYN3 585 aa25.45■■□□□ 1.66
CDC42EP3-201ENST00000295324 RB1CC1Q8TDY2 1594 aa25.39■■□□□ 1.65
CDC42EP3-201ENST00000295324 P3H3Q8IVL6 736 aa25.36■■□□□ 1.65
CDC42EP3-201ENST00000295324 CNGB1Q14028 1251 aaPredicted RBP25.36■■□□□ 1.65
CDC42EP3-201ENST00000295324 CDK11AQ9UQ88 783 aaPredicted RBP25.33■■□□□ 1.64
CDC42EP3-201ENST00000295324 HRCP23327 699 aa25.28■■□□□ 1.64
CDC42EP3-201ENST00000295324 ARID3CA6NKF2 412 aa25.27■■□□□ 1.64
CDC42EP3-201ENST00000295324 NPM1P06748 294 aaKnown RBP eCLIP25.22■■□□□ 1.63
CDC42EP3-201ENST00000295324 NEUROD1Q13562 356 aa25.16■■□□□ 1.62
CDC42EP3-201ENST00000295324 ZNF777Q9ULD5 760 aaPredicted RBP25.13■■□□□ 1.61
CDC42EP3-201ENST00000295324 NACADO15069 1562 aa25.1■■□□□ 1.61
CDC42EP3-201ENST00000295324 ZNF326Q5BKZ1 582 aaKnown RBP25.09■■□□□ 1.61
CDC42EP3-201ENST00000295324 ESF1Q9H501 851 aaKnown RBP25.06■■□□□ 1.6
CDC42EP3-201ENST00000295324 BCANQ96GW7 911 aa25.06■■□□□ 1.6
CDC42EP3-201ENST00000295324 CHMP7Q8WUX9 453 aaPredicted RBP24.99■■□□□ 1.59
CDC42EP3-201ENST00000295324 DAXXQ9UER7 740 aaPredicted RBP24.87■■□□□ 1.57
CDC42EP3-201ENST00000295324 DIEXFQ68CQ4 756 aaKnown RBP24.8■■□□□ 1.56
CDC42EP3-201ENST00000295324 BAZ1BQ9UIG0 1483 aaKnown RBP24.79■■□□□ 1.56
CDC42EP3-201ENST00000295324 STAG3Q9UJ98 1225 aa24.77■■□□□ 1.56
CDC42EP3-201ENST00000295324 ANP32CO43423 234 aa24.7■■□□□ 1.55
CDC42EP3-201ENST00000295324 RSF1Q96T23 1441 aaPredicted RBP24.7■■□□□ 1.55
CDC42EP3-201ENST00000295324 CHGAP10645 457 aaKnown RBP24.69■■□□□ 1.54
CDC42EP3-201ENST00000295324 PLPPR3Q6T4P5 718 aa24.69■■□□□ 1.54
CDC42EP3-201ENST00000295324 NEFMP07197 916 aa24.66■■□□□ 1.54
CDC42EP3-201ENST00000295324 TSPY4P0CV99 314 aa24.66■■□□□ 1.54
CDC42EP3-201ENST00000295324 TSPY10P0CW01 314 aa24.66■■□□□ 1.54
CDC42EP3-201ENST00000295324 CLSPNQ9HAW4 1339 aa24.62■■□□□ 1.53
CDC42EP3-201ENST00000295324 ERCC6Q03468 1493 aa24.61■■□□□ 1.53
CDC42EP3-201ENST00000295324 MTUS2Q5JR59 1369 aa24.6■■□□□ 1.53
CDC42EP3-201ENST00000295324 SLC24A1O60721 1099 aa24.58■■□□□ 1.53
CDC42EP3-201ENST00000295324 DCAF1Q9Y4B6 1507 aa24.54■■□□□ 1.52
CDC42EP3-201ENST00000295324 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.52■■□□□ 1.52
CDC42EP3-201ENST00000295324 WRNQ14191 1432 aaPredicted RBP eCLIP24.52■■□□□ 1.52
CDC42EP3-201ENST00000295324 CHIC2Q9UKJ5 165 aa24.52■■□□□ 1.52
CDC42EP3-201ENST00000295324 EEA1Q15075 1411 aa24.51■■□□□ 1.51
CDC42EP3-201ENST00000295324 BAZ1AQ9NRL2 1556 aaPredicted RBP24.51■■□□□ 1.51
CDC42EP3-201ENST00000295324 PLEKHD1A6NEE1 506 aa24.5■■□□□ 1.51
CDC42EP3-201ENST00000295324 TONSLQ96HA7 1378 aa24.49■■□□□ 1.51
CDC42EP3-201ENST00000295324 ZBTB47Q9UFB7 747 aaPredicted RBP24.46■■□□□ 1.51
CDC42EP3-201ENST00000295324 KCNH8Q96L42 1107 aa24.46■■□□□ 1.51
CDC42EP3-201ENST00000295324 CLIP1P30622 1438 aa24.46■■□□□ 1.51
CDC42EP3-201ENST00000295324 ZNF316A6NFI3 1004 aaPredicted RBP24.45■■□□□ 1.51
CDC42EP3-201ENST00000295324 KIF27Q86VH2 1401 aa24.45■■□□□ 1.5
CDC42EP3-201ENST00000295324 GOLGA3Q08378 1498 aa24.33■■□□□ 1.49
CDC42EP3-201ENST00000295324 CANXP27824 592 aaKnown RBP24.33■■□□□ 1.49
CDC42EP3-201ENST00000295324 CECR2Q9BXF3 1484 aa24.28■■□□□ 1.48
CDC42EP3-201ENST00000295324 ACIN1Q9UKV3 1341 aaKnown RBP24.2■■□□□ 1.46
CDC42EP3-201ENST00000295324 CFDP1Q9UEE9 299 aaPredicted RBP24.2■■□□□ 1.46
CDC42EP3-201ENST00000295324 RTL5Q5HYW3 569 aaPredicted RBP24.19■■□□□ 1.46
CDC42EP3-201ENST00000295324 ARID4BQ4LE39 1312 aaPredicted RBP24.18■■□□□ 1.46
CDC42EP3-201ENST00000295324 KDM2AQ9Y2K7 1162 aa24.17■■□□□ 1.46
CDC42EP3-201ENST00000295324 CEP164Q9UPV0 1460 aa24.16■■□□□ 1.46
CDC42EP3-201ENST00000295324 PPP1R15AO75807 674 aaPredicted RBP24.16■■□□□ 1.46
CDC42EP3-201ENST00000295324 RRP7BPQ9NSQ0 103 aa24.16■■□□□ 1.46
CDC42EP3-201ENST00000295324 PDS5BQ9NTI5 1447 aa24.14■■□□□ 1.46
CDC42EP3-201ENST00000295324 CEP162Q5TB80 1403 aa24.13■■□□□ 1.45
CDC42EP3-201ENST00000295324 BCL11AQ9H165 835 aa24.12■■□□□ 1.45
CDC42EP3-201ENST00000295324 SMARCA2P51531 1590 aa24.11■■□□□ 1.45
CDC42EP3-201ENST00000295324 TNIKQ9UKE5 1360 aa24.06■■□□□ 1.44
CDC42EP3-201ENST00000295324 CUX2O14529 1486 aa24.06■■□□□ 1.44
CDC42EP3-201ENST00000295324 CARMIL1Q5VZK9 1371 aa24.05■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms