RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 CSMD3Q7Z407 3707 aa7.32□□□□□ -1.24
SHANK1-201ENST00000293441 DNAH9Q9NYC9 4486 aa7.3□□□□□ -1.24
SHANK1-201ENST00000293441 AKAP9Q99996 3911 aa7.28□□□□□ -1.24
SHANK1-201ENST00000293441 KRTAP8-1Q8IUC2 63 aa7.27□□□□□ -1.25
SHANK1-201ENST00000293441 ZNF469Q96JG9 3925 aaPredicted RBP7.23□□□□□ -1.25
SHANK1-201ENST00000293441 KRTAP23-1A1A580 65 aa7.2□□□□□ -1.26
SHANK1-201ENST00000293441 DNAH1Q9P2D7 4330 aa7.14□□□□□ -1.27
SHANK1-201ENST00000293441 KRTAP4-1Q9BYQ7 146 aa7.1□□□□□ -1.27
SHANK1-201ENST00000293441 KRTAP10-5P60370 271 aa7.08□□□□□ -1.28
SHANK1-201ENST00000293441 MT1HP80294 61 aa7.07□□□□□ -1.28
SHANK1-201ENST00000293441 DNAH5Q8TE73 4624 aa7.04□□□□□ -1.28
SHANK1-201ENST00000293441 DNAH10Q8IVF4 4471 aa6.97□□□□□ -1.29
SHANK1-201ENST00000293441 PLECQ15149 4684 aaKnown RBP6.92□□□□□ -1.3
SHANK1-201ENST00000293441 MT2AP02795 61 aa6.91□□□□□ -1.3
SHANK1-201ENST00000293441 DNAH2Q9P225 4427 aa6.9□□□□□ -1.31
SHANK1-201ENST00000293441 DNAH3Q8TD57 4116 aa6.85□□□□□ -1.31
SHANK1-201ENST00000293441 DNAH11Q96DT5 4516 aa6.83□□□□□ -1.32
SHANK1-201ENST00000293441 VPS13DQ5THJ4 4388 aa6.83□□□□□ -1.32
SHANK1-201ENST00000293441 DNAH17Q9UFH2 4485 aa6.81□□□□□ -1.32
SHANK1-201ENST00000293441 FAT2Q9NYQ8 4349 aa6.81□□□□□ -1.32
SHANK1-201ENST00000293441 SPRR2GQ9BYE4 73 aa6.79□□□□□ -1.32
SHANK1-201ENST00000293441 SPRR2FQ96RM1 72 aa6.78□□□□□ -1.32
SHANK1-201ENST00000293441 MT1FP04733 61 aa6.78□□□□□ -1.32
SHANK1-201ENST00000293441 LRP1BQ9NZR2 4599 aa6.72□□□□□ -1.33
SHANK1-201ENST00000293441 DYNC2H1Q8NCM8 4307 aaKnown RBP6.7□□□□□ -1.34
SHANK1-201ENST00000293441 KRTAP10-7P60409 375 aaPredicted RBP6.69□□□□□ -1.34
SHANK1-201ENST00000293441 KRTAP19-5Q3LI72 72 aa6.68□□□□□ -1.34
SHANK1-201ENST00000293441 STARD9Q9P2P6 4700 aa6.66□□□□□ -1.34
SHANK1-201ENST00000293441 ANK2Q01484 3957 aa6.66□□□□□ -1.34
SHANK1-201ENST00000293441 DYNC1H1Q14204 4646 aaKnown RBP6.63□□□□□ -1.35
SHANK1-201ENST00000293441 KMT2AQ03164 3969 aa6.6□□□□□ -1.35
SHANK1-201ENST00000293441 DNAH8Q96JB1 4490 aa6.6□□□□□ -1.35
SHANK1-201ENST00000293441 FAT1Q14517 4588 aa6.56□□□□□ -1.36
SHANK1-201ENST00000293441 VPS13BQ7Z7G8 4022 aa6.55□□□□□ -1.36
SHANK1-201ENST00000293441 DNHD1Q96M86 4753 aa6.55□□□□□ -1.36
SHANK1-201ENST00000293441 SACSQ9NZJ4 4579 aa6.54□□□□□ -1.36
SHANK1-201ENST00000293441 PRKDCP78527 4128 aaKnown RBP6.52□□□□□ -1.37
SHANK1-201ENST00000293441 LCE3CQ5T5A8 94 aa6.51□□□□□ -1.37
SHANK1-201ENST00000293441 DNAH7Q8WXX0 4024 aa6.48□□□□□ -1.37
SHANK1-201ENST00000293441 CMYA5Q8N3K9 4069 aa6.44□□□□□ -1.38
SHANK1-201ENST00000293441 FRAS1Q86XX4 4008 aa6.43□□□□□ -1.38
SHANK1-201ENST00000293441 SPRR2EP22531 72 aa6.42□□□□□ -1.38
SHANK1-201ENST00000293441 SPRR2BP35325 72 aa6.42□□□□□ -1.38
SHANK1-201ENST00000293441 SPRR2AP35326 72 aa6.42□□□□□ -1.38
SHANK1-201ENST00000293441 RYR1P21817 5038 aa6.4□□□□□ -1.38
SHANK1-201ENST00000293441 DNAH6Q9C0G6 4158 aa6.39□□□□□ -1.39
SHANK1-201ENST00000293441 LYSTQ99698 3801 aa6.36□□□□□ -1.39
SHANK1-201ENST00000293441 APOBP04114 4563 aaKnown RBP6.34□□□□□ -1.39
SHANK1-201ENST00000293441 KRTAP17-1Q9BYP8 105 aa6.34□□□□□ -1.4
SHANK1-201ENST00000293441 KRTAP19-8Q3LI54 63 aa6.25□□□□□ -1.41
SHANK1-201ENST00000293441 KRTAP19-1Q8IUB9 90 aa6.25□□□□□ -1.41
SHANK1-201ENST00000293441 FAT3Q8TDW7 4589 aa6.24□□□□□ -1.41
SHANK1-201ENST00000293441 SPRR2DP22532 72 aa6.21□□□□□ -1.42
SHANK1-201ENST00000293441 KRTAP19-4Q3LI73 84 aa6.19□□□□□ -1.42
SHANK1-201ENST00000293441 LCE3BQ5TA77 95 aa6.18□□□□□ -1.42
SHANK1-201ENST00000293441 MT1XP80297 61 aa6.17□□□□□ -1.42
SHANK1-201ENST00000293441 LCE2BO14633 110 aa6.14□□□□□ -1.43
SHANK1-201ENST00000293441 RYR3Q15413 4870 aa6.13□□□□□ -1.43
SHANK1-201ENST00000293441 MT1GP13640 62 aa6.12□□□□□ -1.43
SHANK1-201ENST00000293441 HECTD4Q9Y4D8 3996 aa6.12□□□□□ -1.43
SHANK1-201ENST00000293441 KRTAP9-8Q9BYQ0 159 aa6.09□□□□□ -1.43
SHANK1-201ENST00000293441 MT1BP07438 61 aa6.09□□□□□ -1.43
SHANK1-201ENST00000293441 KRTAP4-8A0A0G2JLE6 195 aa6.04□□□□□ -1.44
SHANK1-201ENST00000293441 KRTAP4-8Q9BYQ9 185 aa6.04□□□□□ -1.44
SHANK1-201ENST00000293441 LRP1Q07954 4544 aaKnown RBP6.02□□□□□ -1.45
SHANK1-201ENST00000293441 MYCBP2O75592 4640 aa6.01□□□□□ -1.45
SHANK1-201ENST00000293441 KRTAP12-4P60329 112 aa5.98□□□□□ -1.45
SHANK1-201ENST00000293441 HSPG2P98160 4391 aa5.97□□□□□ -1.45
SHANK1-201ENST00000293441 KRTAP9-3Q9BYQ3 159 aa5.96□□□□□ -1.46
SHANK1-201ENST00000293441 LCE2CQ5TA81 110 aa5.92□□□□□ -1.46
SHANK1-201ENST00000293441 PKHD1L1Q86WI1 4243 aa5.92□□□□□ -1.46
SHANK1-201ENST00000293441 LPAP08519 4548 aa5.83□□□□□ -1.48
SHANK1-201ENST00000293441 PKD1P98161 4303 aa5.81□□□□□ -1.48
SHANK1-201ENST00000293441 RYR2Q92736 4967 aa5.8□□□□□ -1.48
SHANK1-201ENST00000293441 PKHD1P08F94 4074 aa5.72□□□□□ -1.49
SHANK1-201ENST00000293441 LCE3DQ9BYE3 92 aa5.72□□□□□ -1.49
SHANK1-201ENST00000293441 KIAA1109Q2LD37 5005 aa5.72□□□□□ -1.49
SHANK1-201ENST00000293441 KRTAP19-3Q7Z4W3 81 aa5.71□□□□□ -1.5
SHANK1-201ENST00000293441 HERC1Q15751 4861 aa5.69□□□□□ -1.5
SHANK1-201ENST00000293441 LCE2DQ5TA82 110 aaPredicted RBP5.67□□□□□ -1.5
SHANK1-201ENST00000293441 KRTAP4-7Q9BYR0 210 aa5.66□□□□□ -1.5
SHANK1-201ENST00000293441 HYDINQ4G0P3 5121 aa5.64□□□□□ -1.51
SHANK1-201ENST00000293441 TNXBP22105 4242 aa5.62□□□□□ -1.51
SHANK1-201ENST00000293441 LRP2P98164 4655 aa5.62□□□□□ -1.51
SHANK1-201ENST00000293441 MT1LQ93083 61 aa5.6□□□□□ -1.51
SHANK1-201ENST00000293441 LCE3EQ5T5B0 92 aa5.59□□□□□ -1.51
SHANK1-201ENST00000293441 HERC2O95714 4834 aa5.59□□□□□ -1.52
SHANK1-201ENST00000293441 MT1EP04732 61 aa5.57□□□□□ -1.52
SHANK1-201ENST00000293441 SPRR5A0A1B0GTR4 108 aa5.55□□□□□ -1.52
SHANK1-201ENST00000293441 MT4P47944 62 aa5.55□□□□□ -1.52
SHANK1-201ENST00000293441 KRTAP9-2Q9BYQ4 174 aa5.54□□□□□ -1.52
SHANK1-201ENST00000293441 KRTAP19-2Q3LHN2 52 aa5.53□□□□□ -1.52
SHANK1-201ENST00000293441 BIRC6Q9NR09 4857 aa5.51□□□□□ -1.53
SHANK1-201ENST00000293441 KRTAP9-6A0A140TA67 174 aa5.44□□□□□ -1.54
SHANK1-201ENST00000293441 FLGP20930 4061 aaPredicted RBP5.43□□□□□ -1.54
SHANK1-201ENST00000293441 MT1MQ8N339 61 aa5.43□□□□□ -1.54
SHANK1-201ENST00000293441 KRTAP19-6Q3LI70 58 aa5.41□□□□□ -1.54
SHANK1-201ENST00000293441 PCLOQ9Y6V0 5065 aa5.39□□□□□ -1.55
SHANK1-201ENST00000293441 LOC100996750A0A140TA64 210 aa5.39□□□□□ -1.55
SHANK1-201ENST00000293441 MUC17Q685J3 4493 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 197.1 ms