RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 CSMD3Q7Z407 3707 aa7.32□□□□□ -1.24
SHANK1-201ENST00000293441 DNAH9Q9NYC9 4486 aa7.3□□□□□ -1.24
SHANK1-201ENST00000293441 AKAP9Q99996 3911 aa7.28□□□□□ -1.24
SHANK1-201ENST00000293441 KRTAP8-1Q8IUC2 63 aa7.27□□□□□ -1.25
SHANK1-201ENST00000293441 ZNF469Q96JG9 3925 aaPredicted RBP7.23□□□□□ -1.25
SHANK1-201ENST00000293441 KRTAP23-1A1A580 65 aa7.2□□□□□ -1.26
SHANK1-201ENST00000293441 DNAH1Q9P2D7 4330 aa7.14□□□□□ -1.27
SHANK1-201ENST00000293441 KRTAP4-1Q9BYQ7 146 aa7.1□□□□□ -1.27
SHANK1-201ENST00000293441 KRTAP10-5P60370 271 aa7.08□□□□□ -1.28
SHANK1-201ENST00000293441 MT1HP80294 61 aa7.07□□□□□ -1.28
SHANK1-201ENST00000293441 DNAH5Q8TE73 4624 aa7.04□□□□□ -1.28
SHANK1-201ENST00000293441 DNAH10Q8IVF4 4471 aa6.97□□□□□ -1.29
SHANK1-201ENST00000293441 PLECQ15149 4684 aaKnown RBP6.92□□□□□ -1.3
SHANK1-201ENST00000293441 MT2AP02795 61 aa6.91□□□□□ -1.3
SHANK1-201ENST00000293441 DNAH2Q9P225 4427 aa6.9□□□□□ -1.31
SHANK1-201ENST00000293441 DNAH3Q8TD57 4116 aa6.85□□□□□ -1.31
SHANK1-201ENST00000293441 DNAH11Q96DT5 4516 aa6.83□□□□□ -1.32
SHANK1-201ENST00000293441 VPS13DQ5THJ4 4388 aa6.83□□□□□ -1.32
SHANK1-201ENST00000293441 DNAH17Q9UFH2 4485 aa6.81□□□□□ -1.32
SHANK1-201ENST00000293441 FAT2Q9NYQ8 4349 aa6.81□□□□□ -1.32
SHANK1-201ENST00000293441 SPRR2GQ9BYE4 73 aa6.79□□□□□ -1.32
SHANK1-201ENST00000293441 SPRR2FQ96RM1 72 aa6.78□□□□□ -1.32
SHANK1-201ENST00000293441 MT1FP04733 61 aa6.78□□□□□ -1.32
SHANK1-201ENST00000293441 LRP1BQ9NZR2 4599 aa6.72□□□□□ -1.33
SHANK1-201ENST00000293441 DYNC2H1Q8NCM8 4307 aaKnown RBP6.7□□□□□ -1.34
SHANK1-201ENST00000293441 KRTAP10-7P60409 375 aaPredicted RBP6.69□□□□□ -1.34
SHANK1-201ENST00000293441 KRTAP19-5Q3LI72 72 aa6.68□□□□□ -1.34
SHANK1-201ENST00000293441 STARD9Q9P2P6 4700 aa6.66□□□□□ -1.34
SHANK1-201ENST00000293441 ANK2Q01484 3957 aa6.66□□□□□ -1.34
SHANK1-201ENST00000293441 DYNC1H1Q14204 4646 aaKnown RBP6.63□□□□□ -1.35
SHANK1-201ENST00000293441 KMT2AQ03164 3969 aa6.6□□□□□ -1.35
SHANK1-201ENST00000293441 DNAH8Q96JB1 4490 aa6.6□□□□□ -1.35
SHANK1-201ENST00000293441 FAT1Q14517 4588 aa6.56□□□□□ -1.36
SHANK1-201ENST00000293441 VPS13BQ7Z7G8 4022 aa6.55□□□□□ -1.36
SHANK1-201ENST00000293441 DNHD1Q96M86 4753 aa6.55□□□□□ -1.36
SHANK1-201ENST00000293441 SACSQ9NZJ4 4579 aa6.54□□□□□ -1.36
SHANK1-201ENST00000293441 PRKDCP78527 4128 aaKnown RBP6.52□□□□□ -1.37
SHANK1-201ENST00000293441 LCE3CQ5T5A8 94 aa6.51□□□□□ -1.37
SHANK1-201ENST00000293441 DNAH7Q8WXX0 4024 aa6.48□□□□□ -1.37
SHANK1-201ENST00000293441 CMYA5Q8N3K9 4069 aa6.44□□□□□ -1.38
SHANK1-201ENST00000293441 FRAS1Q86XX4 4008 aa6.43□□□□□ -1.38
SHANK1-201ENST00000293441 SPRR2EP22531 72 aa6.42□□□□□ -1.38
SHANK1-201ENST00000293441 SPRR2BP35325 72 aa6.42□□□□□ -1.38
SHANK1-201ENST00000293441 SPRR2AP35326 72 aa6.42□□□□□ -1.38
SHANK1-201ENST00000293441 RYR1P21817 5038 aa6.4□□□□□ -1.38
SHANK1-201ENST00000293441 DNAH6Q9C0G6 4158 aa6.39□□□□□ -1.39
SHANK1-201ENST00000293441 LYSTQ99698 3801 aa6.36□□□□□ -1.39
SHANK1-201ENST00000293441 APOBP04114 4563 aaKnown RBP6.34□□□□□ -1.39
SHANK1-201ENST00000293441 KRTAP17-1Q9BYP8 105 aa6.34□□□□□ -1.4
SHANK1-201ENST00000293441 KRTAP19-8Q3LI54 63 aa6.25□□□□□ -1.41
SHANK1-201ENST00000293441 KRTAP19-1Q8IUB9 90 aa6.25□□□□□ -1.41
SHANK1-201ENST00000293441 FAT3Q8TDW7 4589 aa6.24□□□□□ -1.41
SHANK1-201ENST00000293441 SPRR2DP22532 72 aa6.21□□□□□ -1.42
SHANK1-201ENST00000293441 KRTAP19-4Q3LI73 84 aa6.19□□□□□ -1.42
SHANK1-201ENST00000293441 LCE3BQ5TA77 95 aa6.18□□□□□ -1.42
SHANK1-201ENST00000293441 MT1XP80297 61 aa6.17□□□□□ -1.42
SHANK1-201ENST00000293441 LCE2BO14633 110 aa6.14□□□□□ -1.43
SHANK1-201ENST00000293441 RYR3Q15413 4870 aa6.13□□□□□ -1.43
SHANK1-201ENST00000293441 MT1GP13640 62 aa6.12□□□□□ -1.43
SHANK1-201ENST00000293441 HECTD4Q9Y4D8 3996 aa6.12□□□□□ -1.43
SHANK1-201ENST00000293441 KRTAP9-8Q9BYQ0 159 aa6.09□□□□□ -1.43
SHANK1-201ENST00000293441 MT1BP07438 61 aa6.09□□□□□ -1.43
SHANK1-201ENST00000293441 KRTAP4-8A0A0G2JLE6 195 aa6.04□□□□□ -1.44
SHANK1-201ENST00000293441 KRTAP4-8Q9BYQ9 185 aa6.04□□□□□ -1.44
SHANK1-201ENST00000293441 LRP1Q07954 4544 aaKnown RBP6.02□□□□□ -1.45
SHANK1-201ENST00000293441 MYCBP2O75592 4640 aa6.01□□□□□ -1.45
SHANK1-201ENST00000293441 KRTAP12-4P60329 112 aa5.98□□□□□ -1.45
SHANK1-201ENST00000293441 HSPG2P98160 4391 aa5.97□□□□□ -1.45
SHANK1-201ENST00000293441 KRTAP9-3Q9BYQ3 159 aa5.96□□□□□ -1.46
SHANK1-201ENST00000293441 LCE2CQ5TA81 110 aa5.92□□□□□ -1.46
SHANK1-201ENST00000293441 PKHD1L1Q86WI1 4243 aa5.92□□□□□ -1.46
SHANK1-201ENST00000293441 LPAP08519 4548 aa5.83□□□□□ -1.48
SHANK1-201ENST00000293441 PKD1P98161 4303 aa5.81□□□□□ -1.48
SHANK1-201ENST00000293441 RYR2Q92736 4967 aa5.8□□□□□ -1.48
SHANK1-201ENST00000293441 PKHD1P08F94 4074 aa5.72□□□□□ -1.49
SHANK1-201ENST00000293441 LCE3DQ9BYE3 92 aa5.72□□□□□ -1.49
SHANK1-201ENST00000293441 KIAA1109Q2LD37 5005 aa5.72□□□□□ -1.49
SHANK1-201ENST00000293441 KRTAP19-3Q7Z4W3 81 aa5.71□□□□□ -1.5
SHANK1-201ENST00000293441 HERC1Q15751 4861 aa5.69□□□□□ -1.5
SHANK1-201ENST00000293441 LCE2DQ5TA82 110 aaPredicted RBP5.67□□□□□ -1.5
SHANK1-201ENST00000293441 KRTAP4-7Q9BYR0 210 aa5.66□□□□□ -1.5
SHANK1-201ENST00000293441 HYDINQ4G0P3 5121 aa5.64□□□□□ -1.51
SHANK1-201ENST00000293441 TNXBP22105 4242 aa5.62□□□□□ -1.51
SHANK1-201ENST00000293441 LRP2P98164 4655 aa5.62□□□□□ -1.51
SHANK1-201ENST00000293441 MT1LQ93083 61 aa5.6□□□□□ -1.51
SHANK1-201ENST00000293441 LCE3EQ5T5B0 92 aa5.59□□□□□ -1.51
SHANK1-201ENST00000293441 HERC2O95714 4834 aa5.59□□□□□ -1.52
SHANK1-201ENST00000293441 MT1EP04732 61 aa5.57□□□□□ -1.52
SHANK1-201ENST00000293441 SPRR5A0A1B0GTR4 108 aa5.55□□□□□ -1.52
SHANK1-201ENST00000293441 MT4P47944 62 aa5.55□□□□□ -1.52
SHANK1-201ENST00000293441 KRTAP9-2Q9BYQ4 174 aa5.54□□□□□ -1.52
SHANK1-201ENST00000293441 KRTAP19-2Q3LHN2 52 aa5.53□□□□□ -1.52
SHANK1-201ENST00000293441 BIRC6Q9NR09 4857 aa5.51□□□□□ -1.53
SHANK1-201ENST00000293441 KRTAP9-6A0A140TA67 174 aa5.44□□□□□ -1.54
SHANK1-201ENST00000293441 FLGP20930 4061 aaPredicted RBP5.43□□□□□ -1.54
SHANK1-201ENST00000293441 MT1MQ8N339 61 aa5.43□□□□□ -1.54
SHANK1-201ENST00000293441 KRTAP19-6Q3LI70 58 aa5.41□□□□□ -1.54
SHANK1-201ENST00000293441 PCLOQ9Y6V0 5065 aa5.39□□□□□ -1.55
SHANK1-201ENST00000293441 LOC100996750A0A140TA64 210 aa5.39□□□□□ -1.55
SHANK1-201ENST00000293441 MUC17Q685J3 4493 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms