RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 ABCA13Q86UQ4 5058 aa6.05□□□□□ -1.44
CUX1-202ENST00000292538 A6NN06 94 aa6.05□□□□□ -1.44
CUX1-202ENST00000292538 KRTAP3-1Q9BYR8 98 aa6.04□□□□□ -1.44
CUX1-202ENST00000292538 RPL37P61927 97 aaKnown RBP6.02□□□□□ -1.45
CUX1-202ENST00000292538 SEC61BP60468 96 aaKnown RBP6.02□□□□□ -1.45
CUX1-202ENST00000292538 LPAP08519 4548 aa6.02□□□□□ -1.45
CUX1-202ENST00000292538 LRP2P98164 4655 aa6□□□□□ -1.45
CUX1-202ENST00000292538 COX6B2Q6YFQ2 88 aa5.97□□□□□ -1.45
CUX1-202ENST00000292538 CDC42SE1Q9NRR8 79 aa5.96□□□□□ -1.46
CUX1-202ENST00000292538 HERC2O95714 4834 aa5.92□□□□□ -1.46
CUX1-202ENST00000292538 UQCR11O14957 56 aa5.9□□□□□ -1.46
CUX1-202ENST00000292538 MIR22HGQ0VDD5 57 aa5.89□□□□□ -1.47
CUX1-202ENST00000292538 TPRXLQ17RH7 258 aa5.87□□□□□ -1.47
CUX1-202ENST00000292538 ADM2Q7Z4H4 148 aa5.86□□□□□ -1.47
CUX1-202ENST00000292538 S4R3F8 94 aa5.83□□□□□ -1.48
CUX1-202ENST00000292538 PRAC1Q96KF2 57 aa5.83□□□□□ -1.48
CUX1-202ENST00000292538 SPATA8Q6RVD6 105 aa5.82□□□□□ -1.48
CUX1-202ENST00000292538 A0A1B0GU33 70 aa5.81□□□□□ -1.48
CUX1-202ENST00000292538 MUC2Q02817 5179 aa5.79□□□□□ -1.48
CUX1-202ENST00000292538 KRTAP3-3Q9BYR6 98 aa5.78□□□□□ -1.48
CUX1-202ENST00000292538 H1FX-AS1Q4G0G2 97 aa5.76□□□□□ -1.49
CUX1-202ENST00000292538 BIRC6Q9NR09 4857 aa5.76□□□□□ -1.49
CUX1-202ENST00000292538 H0YAA0 97 aa5.75□□□□□ -1.49
CUX1-202ENST00000292538 HERC1Q15751 4861 aa5.74□□□□□ -1.49
CUX1-202ENST00000292538 PCLOQ9Y6V0 5065 aa5.73□□□□□ -1.49
CUX1-202ENST00000292538 A0A0D9SG42 100 aa5.72□□□□□ -1.49
CUX1-202ENST00000292538 P0C880 135 aa5.68□□□□□ -1.5
CUX1-202ENST00000292538 KRTAP4-1Q9BYQ7 146 aa5.68□□□□□ -1.5
CUX1-202ENST00000292538 CSAG1Q6PB30 78 aa5.66□□□□□ -1.5
CUX1-202ENST00000292538 KRTAP10-6P60371 365 aaPredicted RBP5.66□□□□□ -1.5
CUX1-202ENST00000292538 ROMO1P60602 79 aa5.64□□□□□ -1.51
CUX1-202ENST00000292538 KRTAP13-4Q3LI77 160 aa5.63□□□□□ -1.51
CUX1-202ENST00000292538 KRTAP3-2Q9BYR7 98 aa5.63□□□□□ -1.51
CUX1-202ENST00000292538 LUZP6Q538Z0 58 aa5.61□□□□□ -1.51
CUX1-202ENST00000292538 K7ERS5 55 aa5.57□□□□□ -1.52
CUX1-202ENST00000292538 MUC17Q685J3 4493 aa5.56□□□□□ -1.52
CUX1-202ENST00000292538 SPINT4Q6UDR6 99 aa5.53□□□□□ -1.52
CUX1-202ENST00000292538 CRIPTQ9P021 101 aa5.53□□□□□ -1.52
CUX1-202ENST00000292538 RNF213Q63HN8 5207 aa5.51□□□□□ -1.53
CUX1-202ENST00000292538 HMCN2Q8NDA2 5059 aa5.49□□□□□ -1.53
CUX1-202ENST00000292538 M0QZ58 72 aa5.47□□□□□ -1.53
CUX1-202ENST00000292538 FAT4Q6V0I7 4981 aa5.47□□□□□ -1.53
CUX1-202ENST00000292538 R4GN34 69 aa5.46□□□□□ -1.54
CUX1-202ENST00000292538 UBR4Q5T4S7 5183 aa5.46□□□□□ -1.54
CUX1-202ENST00000292538 KRTAP12-2P59991 146 aa5.44□□□□□ -1.54
CUX1-202ENST00000292538 LORP23490 312 aaPredicted RBP5.43□□□□□ -1.54
CUX1-202ENST00000292538 KRTAP19-2Q3LHN2 52 aa5.39□□□□□ -1.55
CUX1-202ENST00000292538 NDUFAF8A1L188 74 aa5.38□□□□□ -1.55
CUX1-202ENST00000292538 KRTAP25-1Q3LHN0 102 aa5.37□□□□□ -1.55
CUX1-202ENST00000292538 KRTAP12-1P59990 96 aa5.36□□□□□ -1.55
CUX1-202ENST00000292538 M0R2T5 61 aa5.35□□□□□ -1.55
CUX1-202ENST00000292538 FLGP20930 4061 aaPredicted RBP5.33□□□□□ -1.56
CUX1-202ENST00000292538 C10orf95Q9H7T3 257 aa5.28□□□□□ -1.56
CUX1-202ENST00000292538 LCE2CQ5TA81 110 aa5.22□□□□□ -1.57
CUX1-202ENST00000292538 KRTAP23-1A1A580 65 aa5.22□□□□□ -1.57
CUX1-202ENST00000292538 CAMK2N1Q7Z7J9 78 aa5.2□□□□□ -1.58
CUX1-202ENST00000292538 MT1HP80294 61 aa5.15□□□□□ -1.59
CUX1-202ENST00000292538 KRTAP10-10P60014 251 aa5.11□□□□□ -1.59
CUX1-202ENST00000292538 MT1FP04733 61 aa5.02□□□□□ -1.61
CUX1-202ENST00000292538 KRTAP15-1Q3LI76 137 aa5.01□□□□□ -1.61
CUX1-202ENST00000292538 MT2AP02795 61 aa5□□□□□ -1.61
CUX1-202ENST00000292538 PLAC4Q8WY50 150 aa5□□□□□ -1.61
CUX1-202ENST00000292538 KRTAP19-1Q8IUB9 90 aa4.98□□□□□ -1.61
CUX1-202ENST00000292538 KRTAP9-8Q9BYQ0 159 aa4.96□□□□□ -1.61
CUX1-202ENST00000292538 SPRR2GQ9BYE4 73 aa4.93□□□□□ -1.62
CUX1-202ENST00000292538 TNP1P09430 55 aa4.87□□□□□ -1.63
CUX1-202ENST00000292538 USH2AO75445 5202 aa4.84□□□□□ -1.63
CUX1-202ENST00000292538 LCE2DQ5TA82 110 aaPredicted RBP4.81□□□□□ -1.64
CUX1-202ENST00000292538 KRTAP9-3Q9BYQ3 159 aa4.76□□□□□ -1.65
CUX1-202ENST00000292538 MT1BP07438 61 aa4.75□□□□□ -1.65
CUX1-202ENST00000292538 PP632Q6XCG6 107 aa4.73□□□□□ -1.65
CUX1-202ENST00000292538 KRTAP19-8Q3LI54 63 aa4.72□□□□□ -1.65
CUX1-202ENST00000292538 FSIP2Q5CZC0 6907 aa4.71□□□□□ -1.66
CUX1-202ENST00000292538 KRTAP10-5P60370 271 aa4.67□□□□□ -1.66
CUX1-202ENST00000292538 MT1XP80297 61 aa4.67□□□□□ -1.66
CUX1-202ENST00000292538 LCE3AQ5TA76 89 aa4.66□□□□□ -1.66
CUX1-202ENST00000292538 LCE2AQ5TA79 106 aaPredicted RBP4.66□□□□□ -1.66
CUX1-202ENST00000292538 PRO2289Q9P1D8 64 aa4.66□□□□□ -1.66
CUX1-202ENST00000292538 LCE2BO14633 110 aa4.66□□□□□ -1.66
CUX1-202ENST00000292538 KMT2DO14686 5537 aa4.62□□□□□ -1.67
CUX1-202ENST00000292538 KRTAP10-7P60409 375 aaPredicted RBP4.59□□□□□ -1.67
CUX1-202ENST00000292538 KRTAP10-12P60413 245 aa4.55□□□□□ -1.68
CUX1-202ENST00000292538 KRTAP12-3P60328 96 aa4.43□□□□□ -1.7
CUX1-202ENST00000292538 KRTAP4-8A0A0G2JLE6 195 aa4.42□□□□□ -1.7
CUX1-202ENST00000292538 KRTAP4-8Q9BYQ9 185 aa4.42□□□□□ -1.7
CUX1-202ENST00000292538 KRTAP8-1Q8IUC2 63 aa4.41□□□□□ -1.7
CUX1-202ENST00000292538 SSPOA2VEC9 5147 aa4.39□□□□□ -1.71
CUX1-202ENST00000292538 KRTAP19-5Q3LI72 72 aa4.35□□□□□ -1.71
CUX1-202ENST00000292538 INE1O15225 51 aa4.25□□□□□ -1.73
CUX1-202ENST00000292538 SPRR5A0A1B0GTR4 108 aa4.24□□□□□ -1.73
CUX1-202ENST00000292538 FCGBPQ9Y6R7 5405 aaPredicted RBP4.18□□□□□ -1.74
CUX1-202ENST00000292538 KRTAP19-6Q3LI70 58 aa4.16□□□□□ -1.74
CUX1-202ENST00000292538 KRTAP19-7Q3SYF9 63 aa4.15□□□□□ -1.75
CUX1-202ENST00000292538 KRTAP4-7Q9BYR0 210 aa4.15□□□□□ -1.75
CUX1-202ENST00000292538 MUC12Q9UKN1 5478 aa4.14□□□□□ -1.75
CUX1-202ENST00000292538 LCE3CQ5T5A8 94 aa4.12□□□□□ -1.75
CUX1-202ENST00000292538 MACF1Q9UPN3 7388 aaKnown RBP4.05□□□□□ -1.76
CUX1-202ENST00000292538 MT1EP04732 61 aa4.05□□□□□ -1.76
CUX1-202ENST00000292538 DSTQ03001 7570 aaKnown RBP4.03□□□□□ -1.76
CUX1-202ENST00000292538 SYNE2Q8WXH0 6885 aaKnown RBP4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms