RNA–Protein interactions for RNA: ENST00000286835.11

SCAF4-201, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SCAF4, Length 4,193 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-201ENST00000286835 NDUFAF8A1L188 74 aa6.84□□□□□ -1.31
SCAF4-201ENST00000286835 XP32Q5T750 250 aa6.83□□□□□ -1.32
SCAF4-201ENST00000286835 KRTAP10-8P60410 259 aa6.83□□□□□ -1.32
SCAF4-201ENST00000286835 KRTAP10-6P60371 365 aaPredicted RBP6.81□□□□□ -1.32
SCAF4-201ENST00000286835 TPRXLQ17RH7 258 aa6.8□□□□□ -1.32
SCAF4-201ENST00000286835 HYDINQ4G0P3 5121 aa6.79□□□□□ -1.32
SCAF4-201ENST00000286835 M0QZ58 72 aa6.78□□□□□ -1.32
SCAF4-201ENST00000286835 R4GN34 69 aa6.76□□□□□ -1.33
SCAF4-201ENST00000286835 KRTAP12-2P59991 146 aa6.75□□□□□ -1.33
SCAF4-201ENST00000286835 KRTAP3-3Q9BYR6 98 aa6.73□□□□□ -1.33
SCAF4-201ENST00000286835 PKHD1P08F94 4074 aa6.72□□□□□ -1.33
SCAF4-201ENST00000286835 MYCBP2O75592 4640 aa6.7□□□□□ -1.34
SCAF4-201ENST00000286835 KRTAP10-4P60372 401 aaPredicted RBP6.69□□□□□ -1.34
SCAF4-201ENST00000286835 KRTAP3-2Q9BYR7 98 aa6.68□□□□□ -1.34
SCAF4-201ENST00000286835 DYNC1H1Q14204 4646 aaKnown RBP6.68□□□□□ -1.34
SCAF4-201ENST00000286835 CAMK2N1Q7Z7J9 78 aa6.66□□□□□ -1.34
SCAF4-201ENST00000286835 FAT2Q9NYQ8 4349 aa6.65□□□□□ -1.34
SCAF4-201ENST00000286835 KRTAP4-5Q9BYR2 181 aa6.63□□□□□ -1.35
SCAF4-201ENST00000286835 KRTAP12-1P59990 96 aa6.62□□□□□ -1.35
SCAF4-201ENST00000286835 SACSQ9NZJ4 4579 aa6.6□□□□□ -1.35
SCAF4-201ENST00000286835 PKD1P98161 4303 aa6.58□□□□□ -1.36
SCAF4-201ENST00000286835 LRP1Q07954 4544 aaKnown RBP6.57□□□□□ -1.36
SCAF4-201ENST00000286835 MT1HL1P0DM35 61 aa6.56□□□□□ -1.36
SCAF4-201ENST00000286835 KIAA1109Q2LD37 5005 aa6.55□□□□□ -1.36
SCAF4-201ENST00000286835 LUZP6Q538Z0 58 aa6.48□□□□□ -1.37
SCAF4-201ENST00000286835 APOBP04114 4563 aaKnown RBP6.47□□□□□ -1.37
SCAF4-201ENST00000286835 RYR1P21817 5038 aa6.46□□□□□ -1.37
SCAF4-201ENST00000286835 FAT3Q8TDW7 4589 aa6.44□□□□□ -1.38
SCAF4-201ENST00000286835 KRTAP15-1Q3LI76 137 aa6.43□□□□□ -1.38
SCAF4-201ENST00000286835 RYR3Q15413 4870 aa6.42□□□□□ -1.38
SCAF4-201ENST00000286835 PLAC4Q8WY50 150 aa6.41□□□□□ -1.38
SCAF4-201ENST00000286835 KMT2CQ8NEZ4 4911 aaKnown RBP6.37□□□□□ -1.39
SCAF4-201ENST00000286835 HSPG2P98160 4391 aa6.35□□□□□ -1.39
SCAF4-201ENST00000286835 LRP2P98164 4655 aa6.28□□□□□ -1.4
SCAF4-201ENST00000286835 RYR2Q92736 4967 aa6.27□□□□□ -1.41
SCAF4-201ENST00000286835 LORP23490 312 aaPredicted RBP6.26□□□□□ -1.41
SCAF4-201ENST00000286835 PKHD1L1Q86WI1 4243 aa6.23□□□□□ -1.41
SCAF4-201ENST00000286835 KRTAP17-1Q9BYP8 105 aa6.22□□□□□ -1.41
SCAF4-201ENST00000286835 A0A0A0MQY5 61 aa6.21□□□□□ -1.41
SCAF4-201ENST00000286835 KRTAP10-10P60014 251 aa6.21□□□□□ -1.42
SCAF4-201ENST00000286835 LPAP08519 4548 aa6.14□□□□□ -1.43
SCAF4-201ENST00000286835 TNP1P09430 55 aa6.14□□□□□ -1.43
SCAF4-201ENST00000286835 PP632Q6XCG6 107 aa6.12□□□□□ -1.43
SCAF4-201ENST00000286835 TNXBP22105 4242 aa6.1□□□□□ -1.43
SCAF4-201ENST00000286835 HERC2O95714 4834 aa6.1□□□□□ -1.43
SCAF4-201ENST00000286835 KRTAP4-1Q9BYQ7 146 aa6.03□□□□□ -1.44
SCAF4-201ENST00000286835 EPPK1P58107 5090 aaKnown RBP5.99□□□□□ -1.45
SCAF4-201ENST00000286835 ABCA13Q86UQ4 5058 aa5.89□□□□□ -1.47
SCAF4-201ENST00000286835 BIRC6Q9NR09 4857 aa5.86□□□□□ -1.47
SCAF4-201ENST00000286835 MUC2Q02817 5179 aa5.78□□□□□ -1.48
SCAF4-201ENST00000286835 PRO2289Q9P1D8 64 aa5.71□□□□□ -1.49
SCAF4-201ENST00000286835 PCLOQ9Y6V0 5065 aa5.67□□□□□ -1.5
SCAF4-201ENST00000286835 HERC1Q15751 4861 aa5.62□□□□□ -1.51
SCAF4-201ENST00000286835 LCE3AQ5TA76 89 aa5.62□□□□□ -1.51
SCAF4-201ENST00000286835 MT1HP80294 61 aa5.59□□□□□ -1.52
SCAF4-201ENST00000286835 KRTAP19-2Q3LHN2 52 aa5.55□□□□□ -1.52
SCAF4-201ENST00000286835 MUC17Q685J3 4493 aa5.55□□□□□ -1.52
SCAF4-201ENST00000286835 RNF213Q63HN8 5207 aa5.52□□□□□ -1.53
SCAF4-201ENST00000286835 FAT4Q6V0I7 4981 aa5.51□□□□□ -1.53
SCAF4-201ENST00000286835 KRTAP23-1A1A580 65 aa5.5□□□□□ -1.53
SCAF4-201ENST00000286835 MT2AP02795 61 aa5.46□□□□□ -1.54
SCAF4-201ENST00000286835 FLGP20930 4061 aaPredicted RBP5.44□□□□□ -1.54
SCAF4-201ENST00000286835 KRTAP19-1Q8IUB9 90 aa5.43□□□□□ -1.54
SCAF4-201ENST00000286835 MT1FP04733 61 aa5.42□□□□□ -1.54
SCAF4-201ENST00000286835 SPRR2GQ9BYE4 73 aa5.42□□□□□ -1.54
SCAF4-201ENST00000286835 UBR4Q5T4S7 5183 aa5.41□□□□□ -1.54
SCAF4-201ENST00000286835 KRTAP10-12P60413 245 aa5.38□□□□□ -1.55
SCAF4-201ENST00000286835 KRTAP12-3P60328 96 aa5.38□□□□□ -1.55
SCAF4-201ENST00000286835 SPRR5A0A1B0GTR4 108 aa5.35□□□□□ -1.55
SCAF4-201ENST00000286835 FSIP2Q5CZC0 6907 aa5.32□□□□□ -1.56
SCAF4-201ENST00000286835 LCE2CQ5TA81 110 aa5.31□□□□□ -1.56
SCAF4-201ENST00000286835 HMCN2Q8NDA2 5059 aa5.26□□□□□ -1.57
SCAF4-201ENST00000286835 KRTAP8-1Q8IUC2 63 aa5.23□□□□□ -1.57
SCAF4-201ENST00000286835 INE1O15225 51 aa5.2□□□□□ -1.58
SCAF4-201ENST00000286835 KRTAP9-8Q9BYQ0 159 aa5.18□□□□□ -1.58
SCAF4-201ENST00000286835 KRTAP10-7P60409 375 aaPredicted RBP5.16□□□□□ -1.58
SCAF4-201ENST00000286835 MT1XP80297 61 aa5.15□□□□□ -1.59
SCAF4-201ENST00000286835 KRTAP10-5P60370 271 aa5.14□□□□□ -1.59
SCAF4-201ENST00000286835 MT1BP07438 61 aa5.12□□□□□ -1.59
SCAF4-201ENST00000286835 CRCT1Q9UGL9 99 aa5.09□□□□□ -1.59
SCAF4-201ENST00000286835 KRTAP19-8Q3LI54 63 aa5.08□□□□□ -1.6
SCAF4-201ENST00000286835 KRTAP19-5Q3LI72 72 aa5.04□□□□□ -1.6
SCAF4-201ENST00000286835 KRTAP9-3Q9BYQ3 159 aa4.99□□□□□ -1.61
SCAF4-201ENST00000286835 LCE3CQ5T5A8 94 aa4.94□□□□□ -1.62
SCAF4-201ENST00000286835 KRTAP4-8A0A0G2JLE6 195 aa4.91□□□□□ -1.62
SCAF4-201ENST00000286835 KRTAP4-8Q9BYQ9 185 aa4.91□□□□□ -1.62
SCAF4-201ENST00000286835 KMT2DO14686 5537 aa4.9□□□□□ -1.62
SCAF4-201ENST00000286835 LCE2BO14633 110 aa4.9□□□□□ -1.63
SCAF4-201ENST00000286835 USH2AO75445 5202 aa4.9□□□□□ -1.63
SCAF4-201ENST00000286835 OBSCNQ5VST9 7968 aa4.86□□□□□ -1.63
SCAF4-201ENST00000286835 LCE2AQ5TA79 106 aaPredicted RBP4.81□□□□□ -1.64
SCAF4-201ENST00000286835 KRTAP4-7Q9BYR0 210 aa4.81□□□□□ -1.64
SCAF4-201ENST00000286835 SPRR2FQ96RM1 72 aa4.78□□□□□ -1.64
SCAF4-201ENST00000286835 SYNE1Q8NF91 8797 aaKnown RBP4.74□□□□□ -1.65
SCAF4-201ENST00000286835 KRTAP9-6A8MVA2 160 aa4.64□□□□□ -1.67
SCAF4-201ENST00000286835 KRTAP19-7Q3SYF9 63 aa4.53□□□□□ -1.68
SCAF4-201ENST00000286835 KRTAP9-2Q9BYQ4 174 aa4.53□□□□□ -1.68
SCAF4-201ENST00000286835 DSTQ03001 7570 aaKnown RBP4.51□□□□□ -1.69
SCAF4-201ENST00000286835 MT1LQ93083 61 aa4.5□□□□□ -1.69
SCAF4-201ENST00000286835 MT1GP13640 62 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms