RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 DNAH8Q96JB1 4490 aa5.97□□□□□ -1.45
CLSTN3-201ENST00000266546 KMT2AQ03164 3969 aa5.96□□□□□ -1.46
CLSTN3-201ENST00000266546 DNAH5Q8TE73 4624 aa5.96□□□□□ -1.46
CLSTN3-201ENST00000266546 MT1HL1P0DM35 61 aa5.91□□□□□ -1.46
CLSTN3-201ENST00000266546 P0C880 135 aa5.91□□□□□ -1.46
CLSTN3-201ENST00000266546 DYNC1H1Q14204 4646 aaKnown RBP5.91□□□□□ -1.46
CLSTN3-201ENST00000266546 HECTD4Q9Y4D8 3996 aa5.89□□□□□ -1.47
CLSTN3-201ENST00000266546 KRTAP3-1Q9BYR8 98 aa5.89□□□□□ -1.47
CLSTN3-201ENST00000266546 FRAS1Q86XX4 4008 aa5.89□□□□□ -1.47
CLSTN3-201ENST00000266546 LRP1BQ9NZR2 4599 aa5.88□□□□□ -1.47
CLSTN3-201ENST00000266546 SACSQ9NZJ4 4579 aa5.85□□□□□ -1.47
CLSTN3-201ENST00000266546 FAT2Q9NYQ8 4349 aa5.83□□□□□ -1.48
CLSTN3-201ENST00000266546 RYR2Q92736 4967 aa5.8□□□□□ -1.48
CLSTN3-201ENST00000266546 KRTAP12-2P59991 146 aa5.77□□□□□ -1.49
CLSTN3-201ENST00000266546 HYDINQ4G0P3 5121 aa5.77□□□□□ -1.49
CLSTN3-201ENST00000266546 KRTAP4-5Q9BYR2 181 aa5.74□□□□□ -1.49
CLSTN3-201ENST00000266546 KRTAP10-10P60014 251 aa5.73□□□□□ -1.49
CLSTN3-201ENST00000266546 KRTAP13-4Q3LI77 160 aa5.73□□□□□ -1.49
CLSTN3-201ENST00000266546 KRTAP10-6P60371 365 aaPredicted RBP5.73□□□□□ -1.49
CLSTN3-201ENST00000266546 PP632Q6XCG6 107 aa5.71□□□□□ -1.49
CLSTN3-201ENST00000266546 KRTAP12-1P59990 96 aa5.7□□□□□ -1.5
CLSTN3-201ENST00000266546 FAT1Q14517 4588 aa5.7□□□□□ -1.5
CLSTN3-201ENST00000266546 PKD1P98161 4303 aa5.67□□□□□ -1.5
CLSTN3-201ENST00000266546 TNP1P09430 55 aa5.67□□□□□ -1.5
CLSTN3-201ENST00000266546 APOBP04114 4563 aaKnown RBP5.67□□□□□ -1.5
CLSTN3-201ENST00000266546 VPS13BQ7Z7G8 4022 aa5.67□□□□□ -1.5
CLSTN3-201ENST00000266546 RYR1P21817 5038 aa5.63□□□□□ -1.51
CLSTN3-201ENST00000266546 KRTAP3-2Q9BYR7 98 aa5.57□□□□□ -1.52
CLSTN3-201ENST00000266546 RYR3Q15413 4870 aa5.57□□□□□ -1.52
CLSTN3-201ENST00000266546 KIAA1109Q2LD37 5005 aa5.57□□□□□ -1.52
CLSTN3-201ENST00000266546 KRTAP15-1Q3LI76 137 aa5.56□□□□□ -1.52
CLSTN3-201ENST00000266546 KRTAP17-1Q9BYP8 105 aa5.56□□□□□ -1.52
CLSTN3-201ENST00000266546 KRTAP3-3Q9BYR6 98 aa5.56□□□□□ -1.52
CLSTN3-201ENST00000266546 KMT2CQ8NEZ4 4911 aaKnown RBP5.55□□□□□ -1.52
CLSTN3-201ENST00000266546 PKHD1P08F94 4074 aa5.54□□□□□ -1.52
CLSTN3-201ENST00000266546 HSPG2P98160 4391 aa5.48□□□□□ -1.53
CLSTN3-201ENST00000266546 BIRC6Q9NR09 4857 aa5.4□□□□□ -1.55
CLSTN3-201ENST00000266546 PRO2289Q9P1D8 64 aa5.39□□□□□ -1.55
CLSTN3-201ENST00000266546 LRP1Q07954 4544 aaKnown RBP5.38□□□□□ -1.55
CLSTN3-201ENST00000266546 MYCBP2O75592 4640 aa5.37□□□□□ -1.55
CLSTN3-201ENST00000266546 FAT3Q8TDW7 4589 aa5.36□□□□□ -1.55
CLSTN3-201ENST00000266546 PKHD1L1Q86WI1 4243 aa5.36□□□□□ -1.55
CLSTN3-201ENST00000266546 EPPK1P58107 5090 aaKnown RBP5.27□□□□□ -1.57
CLSTN3-201ENST00000266546 HERC2O95714 4834 aa5.27□□□□□ -1.57
CLSTN3-201ENST00000266546 TNXBP22105 4242 aa5.25□□□□□ -1.57
CLSTN3-201ENST00000266546 KRTAP4-1Q9BYQ7 146 aa5.25□□□□□ -1.57
CLSTN3-201ENST00000266546 LORP23490 312 aaPredicted RBP5.1□□□□□ -1.59
CLSTN3-201ENST00000266546 ABCA13Q86UQ4 5058 aa5.1□□□□□ -1.59
CLSTN3-201ENST00000266546 LRP2P98164 4655 aa5.04□□□□□ -1.6
CLSTN3-201ENST00000266546 HERC1Q15751 4861 aa5□□□□□ -1.61
CLSTN3-201ENST00000266546 MT1HP80294 61 aa5□□□□□ -1.61
CLSTN3-201ENST00000266546 KRTAP23-1A1A580 65 aa4.97□□□□□ -1.61
CLSTN3-201ENST00000266546 INE1O15225 51 aa4.94□□□□□ -1.62
CLSTN3-201ENST00000266546 KRTAP19-2Q3LHN2 52 aa4.93□□□□□ -1.62
CLSTN3-201ENST00000266546 PCLOQ9Y6V0 5065 aa4.92□□□□□ -1.62
CLSTN3-201ENST00000266546 LPAP08519 4548 aa4.92□□□□□ -1.62
CLSTN3-201ENST00000266546 LCE2CQ5TA81 110 aa4.89□□□□□ -1.63
CLSTN3-201ENST00000266546 MUC17Q685J3 4493 aa4.89□□□□□ -1.63
CLSTN3-201ENST00000266546 MT2AP02795 61 aa4.86□□□□□ -1.63
CLSTN3-201ENST00000266546 SPRR2GQ9BYE4 73 aa4.86□□□□□ -1.63
CLSTN3-201ENST00000266546 LCE3AQ5TA76 89 aa4.83□□□□□ -1.64
CLSTN3-201ENST00000266546 MT1FP04733 61 aa4.78□□□□□ -1.64
CLSTN3-201ENST00000266546 HMCN2Q8NDA2 5059 aa4.78□□□□□ -1.64
CLSTN3-201ENST00000266546 KRTAP10-12P60413 245 aa4.78□□□□□ -1.64
CLSTN3-201ENST00000266546 KRTAP12-3P60328 96 aa4.76□□□□□ -1.65
CLSTN3-201ENST00000266546 FLGP20930 4061 aaPredicted RBP4.72□□□□□ -1.65
CLSTN3-201ENST00000266546 KRTAP9-8Q9BYQ0 159 aa4.72□□□□□ -1.65
CLSTN3-201ENST00000266546 CRCT1Q9UGL9 99 aa4.71□□□□□ -1.66
CLSTN3-201ENST00000266546 KRTAP19-1Q8IUB9 90 aa4.69□□□□□ -1.66
CLSTN3-201ENST00000266546 KRTAP19-8Q3LI54 63 aa4.68□□□□□ -1.66
CLSTN3-201ENST00000266546 RNF213Q63HN8 5207 aa4.63□□□□□ -1.67
CLSTN3-201ENST00000266546 KRTAP8-1Q8IUC2 63 aa4.6□□□□□ -1.67
CLSTN3-201ENST00000266546 KRTAP9-3Q9BYQ3 159 aa4.57□□□□□ -1.68
CLSTN3-201ENST00000266546 FAT4Q6V0I7 4981 aa4.53□□□□□ -1.68
CLSTN3-201ENST00000266546 LCE2AQ5TA79 106 aaPredicted RBP4.53□□□□□ -1.68
CLSTN3-201ENST00000266546 FSIP2Q5CZC0 6907 aa4.52□□□□□ -1.69
CLSTN3-201ENST00000266546 SPRR5A0A1B0GTR4 108 aa4.52□□□□□ -1.69
CLSTN3-201ENST00000266546 MT1BP07438 61 aa4.52□□□□□ -1.69
CLSTN3-201ENST00000266546 MUC2Q02817 5179 aa4.49□□□□□ -1.69
CLSTN3-201ENST00000266546 KRTAP9-6A0A140TA67 174 aa4.48□□□□□ -1.69
CLSTN3-201ENST00000266546 UBR4Q5T4S7 5183 aa4.48□□□□□ -1.69
CLSTN3-201ENST00000266546 KRTAP9-2Q9BYQ4 174 aa4.46□□□□□ -1.7
CLSTN3-201ENST00000266546 SPRR2FQ96RM1 72 aa4.43□□□□□ -1.7
CLSTN3-201ENST00000266546 MT1XP80297 61 aa4.42□□□□□ -1.7
CLSTN3-201ENST00000266546 KRTAP10-5P60370 271 aa4.4□□□□□ -1.71
CLSTN3-201ENST00000266546 SYNE1Q8NF91 8797 aaKnown RBP4.38□□□□□ -1.71
CLSTN3-201ENST00000266546 LCE2BO14633 110 aa4.37□□□□□ -1.71
CLSTN3-201ENST00000266546 KRTAP10-7P60409 375 aaPredicted RBP4.3□□□□□ -1.72
CLSTN3-201ENST00000266546 LCE3CQ5T5A8 94 aa4.29□□□□□ -1.72
CLSTN3-201ENST00000266546 KRTAP19-5Q3LI72 72 aa4.28□□□□□ -1.72
CLSTN3-201ENST00000266546 LCE2DQ5TA82 110 aaPredicted RBP4.25□□□□□ -1.73
CLSTN3-201ENST00000266546 KRTAP19-4Q3LI73 84 aa4.23□□□□□ -1.73
CLSTN3-201ENST00000266546 KRTAP19-6Q3LI70 58 aa4.2□□□□□ -1.74
CLSTN3-201ENST00000266546 SPRR2EP22531 72 aa4.16□□□□□ -1.74
CLSTN3-201ENST00000266546 SPRR2BP35325 72 aa4.16□□□□□ -1.74
CLSTN3-201ENST00000266546 SPRR2AP35326 72 aa4.16□□□□□ -1.74
CLSTN3-201ENST00000266546 KRTAP4-8A0A0G2JLE6 195 aa4.12□□□□□ -1.75
CLSTN3-201ENST00000266546 KRTAP4-8Q9BYQ9 185 aa4.12□□□□□ -1.75
CLSTN3-201ENST00000266546 KRTAP9-7A8MTY7 169 aa4.08□□□□□ -1.76
CLSTN3-201ENST00000266546 OBSCNQ5VST9 7968 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 156.5 ms